Clone Name	rbasd24m05
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AK064987.1| Oryza sativa (japonica cultivar-group) cDNA clon...	321	2e-84
2	dbj|AK121431.1| Oryza sativa (japonica cultivar-group) cDNA clon...	313	4e-82
3	gb|AF007794.1|AF007794 Zea mays retinoblastoma-related protein 2...	246	8e-62
4	emb|X98923.1|ZMRB1 Z.mays mRNA for Rb1 protein	214	3e-52
5	gb|AF250050.1| Zea mays retinoblastoma related protein RBR1 (rbr...	214	3e-52
6	gb|AF007793.1|AF007793 Zea mays retinoblastoma-related protein 1...	214	3e-52
7	gb|AF007795.1|AF007795 Zea mays retinoblastoma-related protein 2...	208	2e-50
8	gb|BT016548.1| Zea mays clone Contig381 mRNA sequence	206	7e-50
9	gb|U52099.2|ZMU52099 Zea mays retinoblastoma-like protein (ZmRB)...	206	7e-50
10	gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome...	137	5e-29
11	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	137	5e-29
12	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	137	5e-29
13	gb|AY109777.1| Zea mays CL1187_-3 mRNA sequence	121	3e-24
14	gb|AY109345.1| Zea mays CL1187_1 mRNA sequence	119	1e-23
15	emb|AJ279062.2|ZMA279062 Zea mays rbr2 gene for retinoblastoma-r...	113	8e-22
16	gb|AY117036.1| Cocos nucifera retinoblastoma-like protein (Rb1) ...	100	1e-17
17	dbj|AB015221.1| Nicotiana tabacum NtRb1 mRNA, complete cds	48	0.037
18	gb|AY699399.1| Nicotiana benthamiana retinoblastoma protein mRNA...	48	0.037
19	gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, comp...	46	0.15
20	gb|AF384675.1| Mus musculus FGF15 (Fgf15) gene, complete cds; BC...	42	2.3
21	gb|AC123804.3| Mus musculus BAC clone RP24-140B5 from chromosome...	42	2.3
22	gb|AC111653.8| Rattus norvegicus 2 BAC CH230-108E11 (Children's ...	42	2.3
23	emb|AL160007.10| Human DNA sequence from clone RP4-798P15 on chr...	42	2.3
24	emb|AL139156.11| Human DNA sequence from clone RP4-800M22 on chr...	42	2.3
25	gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosom...	42	2.3
26	gb|AC023892.35|AC023892 Homo sapiens 12 BAC RP11-937H2 (Roswell ...	42	2.3
27	gb|AC151338.2| Xenopus tropicalis clone ISB-347F7, complete sequ...	42	2.3
28	gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, comp...	42	2.3
29	gb|AC105754.3| Homo sapiens chromosome 1 clone RP4-814E15, compl...	42	2.3
30	gb|AF230739.1|AF230739 Euphorbia esula retinoblastoma-like prote...	42	2.3
31	emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in...	42	2.3
32	gb|AY832292.1| Platanus occidentalis ribosomal protein S4 (rps4)...	42	2.3
33	gb|AY832286.1| Calycanthus floridus ribosomal protein S4 (rps4) ...	42	2.3
34	dbj|AB071771.1| Capsicum annuum rps4 gene for ribosomal protein ...	42	2.3
35	gb|AC113031.11| Mus musculus chromosome 14, clone RP23-220B20, c...	40	9.1
36	emb|CR352310.15| Zebrafish DNA sequence from clone CH211-254E10 ...	40	9.1
37	ref|XM_647750.1| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	9.1
38	gb|AC111144.8| Mus musculus chromosome 6, clone RP23-373C23, com...	40	9.1
39	emb|X63603.1|NTACTI N.tabacum gene for actin	40	9.1
40	emb|AL591982.1| Listeria monocytogenes strain EGD, complete geno...	40	9.1
41	gb|AC160537.6| Mus musculus chromosome 8, clone RP24-95H19, comp...	40	9.1
42	emb|CR354422.7| Zebrafish DNA sequence from clone CH211-129O4 in...	40	9.1
43	emb|AL592283.5| Mouse DNA sequence from clone RP23-386C23 on chr...	40	9.1
44	dbj|AK056925.1| Homo sapiens cDNA FLJ32363 fis, clone PUAEN1000081	40	9.1
45	gb|AC068953.9| Homo sapiens chromosome 8, clone CTD1-2019D9, com...	40	9.1
46	gb|AC114310.2| Homo sapiens chromosome 5 clone RP11-285K13, comp...	40	9.1
47	gb|AC114956.2| Homo sapiens chromosome 5 clone RP11-159F24, comp...	40	9.1
48	gb|AC020708.6| Homo sapiens BAC clone RP11-425B17 from 4, comple...	40	9.1
49	gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, com...	40	9.1
50	gb|AC007755.6|AC007755 Drosophila melanogaster, chromosome 3R, r...	40	9.1
51	gb|AC008482.5|AC008482 Homo sapiens chromosome 5 clone CTC-402A1...	40	9.1
52	ref|NM_198566.1| Homo sapiens FLJ32363 protein (FLJ32363), mRNA	40	9.1
53	dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge...	40	9.1
54	gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides ret...	40	9.1
55	emb|BX005094.3| Zebrafish DNA sequence from clone CH211-180H17 i...	40	9.1
56	gb|BC036867.1| Homo sapiens FLJ32363 protein, mRNA (cDNA clone M...	40	9.1
57	emb|BX088722.8| Zebrafish DNA sequence from clone CH211-253P18 i...	40	9.1
58	gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49...	40	9.1
59	dbj|AP003468.2| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.1
60	gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, comple...	40	9.1
61	emb|X83768.1|HSNFKB2PR H.sapiens NFKB2/LYT-10 gene promoter region	40	9.1

---

>dbj|AK064987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D03, full
            insert sequence
          Length = 3332

 Score =  321 bits (162), Expect = 2e-84
 Identities = 297/342 (86%)
 Strand = Plus / Minus

                                                                        
Query: 297  gcaggatccgaagaggcagggacaccatttggttggcccagactgccagctaccactgaa 356
            |||||||||||||||||||   ||||||| |||||||||||||| ||||| ||||| || 
Sbjct: 3022 gcaggatccgaagaggcagaaccaccattgggttggcccagactaccagccaccaccgag 2963

                                                                        
Query: 357  tcgctaaccatgtcaaagtttattcgagtgttgattctcctggtggtgtaatttagacaa 416
            || || |||||||| ||||||||||| ||||||||||||||||| | ||||||||| |  
Sbjct: 2962 tcactcaccatgtcgaagtttattcgtgtgttgattctcctggtagggtaatttaggcgg 2903

                                                                        
Query: 417  ttatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgata 476
             |||||||||| |||| ||| |  |||| ||||||| |||| || |||||||||||||| 
Sbjct: 2902 ctatttatagcagccagatccttggatgggctctgaaaagcttgagtgctttcaccgatg 2843

                                                                        
Query: 477  caagcataaaaactcctcgaacttggtgaaagcaatgcatccttcttggtttgacgcaga 536
            || || || |||||||  |||||||||||||||||||||||| |||| ||||| || |||
Sbjct: 2842 cacgcgtagaaactccgtgaacttggtgaaagcaatgcatccatcttagtttgtcgtaga 2783

                                                                        
Query: 537  ggagaaatataaacattatgggaagatgagactttctttggggacatatctggtagattt 596
            ||||| | ||| |||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 2782 ggagagacatacacattatgagaagatgagactttcttcggggacatatctggtaaattt 2723

                                                      
Query: 597  gagaagggagatgactttggtgatccaggaatttggctatta 638
            ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2722 gagaaaggagatgacttgggtgatccaggaatttggctatta 2681



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 168  ttcacccacttattcagaagaac 190
            |||||||||||||||||||||||
Sbjct: 3151 ttcacccacttattcagaagaac 3129

---

>dbj|AK121431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138G19, full
            insert sequence
          Length = 3384

 Score =  313 bits (158), Expect = 4e-82
 Identities = 296/342 (86%)
 Strand = Plus / Minus

                                                                        
Query: 297  gcaggatccgaagaggcagggacaccatttggttggcccagactgccagctaccactgaa 356
            |||||||||||||||||||   ||||||| |||||||||||||| ||||| ||||| || 
Sbjct: 3063 gcaggatccgaagaggcagaaccaccattgggttggcccagactaccagccaccaccgag 3004

                                                                        
Query: 357  tcgctaaccatgtcaaagtttattcgagtgttgattctcctggtggtgtaatttagacaa 416
            || || |||||||| ||||||||||| |||| |||||||||||| | ||||||||| |  
Sbjct: 3003 tcactcaccatgtcgaagtttattcgtgtgtcgattctcctggtagggtaatttaggcgg 2944

                                                                        
Query: 417  ttatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgata 476
             |||||||||| |||| ||| |  |||| ||||||| |||| || |||||||||||||| 
Sbjct: 2943 ctatttatagcagccagatccttggatgggctctgaaaagcttgagtgctttcaccgatg 2884

                                                                        
Query: 477  caagcataaaaactcctcgaacttggtgaaagcaatgcatccttcttggtttgacgcaga 536
            || || || |||||||  |||||||||||||||||||||||| |||| ||||| || |||
Sbjct: 2883 cacgcgtagaaactccgtgaacttggtgaaagcaatgcatccatcttagtttgtcgtaga 2824

                                                                        
Query: 537  ggagaaatataaacattatgggaagatgagactttctttggggacatatctggtagattt 596
            ||||| | ||| |||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 2823 ggagagacatacacattatgagaagatgagactttcttcggggacatatctggtaaattt 2764

                                                      
Query: 597  gagaagggagatgactttggtgatccaggaatttggctatta 638
            ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2763 gagaaaggagatgacttgggtgatccaggaatttggctatta 2722



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 168  ttcacccacttattcagaagaac 190
            |||||||||||||||||||||||
Sbjct: 3192 ttcacccacttattcagaagaac 3170

---

>gb|AF007794.1|AF007794 Zea mays retinoblastoma-related protein 2a (RRB2a) mRNA, partial cds
          Length = 2945

 Score =  246 bits (124), Expect = 8e-62
 Identities = 280/332 (84%)
 Strand = Plus / Minus

                                                                        
Query: 319  caccatttggttggcccagactgccagctaccactgaatcgctaaccatgtcaaagttta 378
            |||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 1200 caccatttggctggcctagactaccagctaccactgagtcgctcaccatgtcaaagttta 1141

                                                                        
Query: 379  ttcgagtgttgattctcctggtggtgtaatttagacaattatttatagcggccaaatctt 438
             |||| |||| | |||||      | |||||||| |   |||||||||| ||||||||||
Sbjct: 1140 atcgactgtttactctccgaccattataatttaggcggctatttatagcagccaaatctt 1081

                                                                        
Query: 439  cagatgagctctgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaac 498
             ||||| |||||||||||||||||||| |||||| || || |||||||||||||| ||||
Sbjct: 1080 tagatgggctctgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaac 1021

                                                                        
Query: 499  ttggtgaaagcaatgcatccttcttggtttgacgcagaggagaaatataaacattatggg 558
            ||||||| |||| |  |||| |||||||||| |||| |||||| | ||| |||||||| |
Sbjct: 1020 ttggtgacagcagtaaatccatcttggtttgccgcaaaggagacacatatacattatgag 961

                                                                        
Query: 559  aagatgagactttctttggggacatatctggtagatttgagaagggagatgactttggtg 618
            ||| ||| ||||||||||||||||||||||||| ||||| ||| ||||||  ||| ||||
Sbjct: 960  aagctgaaactttctttggggacatatctggtaaatttgggaaaggagatagcttcggtg 901

                                            
Query: 619  atccaggaatttggctattatgattcttcttg 650
            ||||||||| ||||| | ||  ||||||||||
Sbjct: 900  atccaggaacttggccactagcattcttcttg 869



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 121  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 180
            ||||||| | ||| |||||||| | |||||||||| || || || |||  ||||||||||
Sbjct: 1389 actgctggttctcactaacacatacatgtacagttaaatcactccagtcaacccacttat 1330

                     
Query: 181  tcagaagaa 189
            |||||||||
Sbjct: 1329 tcagaagaa 1321

---

>emb|X98923.1|ZMRB1 Z.mays mRNA for Rb1 protein
          Length = 3747

 Score =  214 bits (108), Expect = 3e-52
 Identities = 281/339 (82%)
 Strand = Plus / Minus

                                                                        
Query: 330  tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 389
            |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 2006 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 1947

                                                                        
Query: 390  attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 449
            | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 1946 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 1887

                                                                        
Query: 450  tgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtgaaagc 509
            |||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 1886 tgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaacttggtgacagc 1827

                                                                        
Query: 510  aatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatgagact 569
            | |  ||||  ||||||||| |||| |||||| | ||| |||||||| || | ||| |||
Sbjct: 1826 agtagatccaacttggtttgccgcaaaggagacacatatacattatgagatgctgaaact 1767

                                                                        
Query: 570  ttctttggggacatatctggtagatttgagaagggagatgactttggtgatccaggaatt 629
            ||||| |||||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||
Sbjct: 1766 ttcttcggggacatatctggtaaatttgggaaaggagatggcttgggtgatccaggaatt 1707

                                                   
Query: 630  tggctattatgattcttcttgntgtctggatgagcacca 668
            |||| | ||  ||||||||||   |||||||||| ||||
Sbjct: 1706 tggccactagcattcttcttgtcttctggatgagtacca 1668



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 121  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 180
            ||||||||| ||| |||||||| | |||||||||| || |  || |||| | ||||||||
Sbjct: 2213 actgctgcttctcactaacacatacatgtacagttaaatcgctccagttaatccacttat 2154

                     
Query: 181  tcagaagaa 189
            |||||||||
Sbjct: 2153 tcagaagaa 2145

---

>gb|AF250050.1| Zea mays retinoblastoma related protein RBR1 (rbr1) mRNA, complete
            cds
          Length = 2952

 Score =  214 bits (108), Expect = 3e-52
 Identities = 281/339 (82%)
 Strand = Plus / Minus

                                                                        
Query: 330  tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 389
            |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 2644 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 2585

                                                                        
Query: 390  attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 449
            | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 2584 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 2525

                                                                        
Query: 450  tgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtgaaagc 509
            |||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 2524 tgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaacttggtgacagc 2465

                                                                        
Query: 510  aatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatgagact 569
            | |  ||||  ||||||||| |||| |||||| | ||| |||||||| || | ||| |||
Sbjct: 2464 agtagatccaacttggtttgccgcaaaggagacacatatacattatgagatgctgaaact 2405

                                                                        
Query: 570  ttctttggggacatatctggtagatttgagaagggagatgactttggtgatccaggaatt 629
            ||||| |||||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||
Sbjct: 2404 ttcttcggggacatatctggtaaatttgggaaaggagatggcttgggtgatccaggaatt 2345

                                                   
Query: 630  tggctattatgattcttcttgntgtctggatgagcacca 668
            |||| | ||  ||||||||||   |||||||||| ||||
Sbjct: 2344 tggccactagcattcttcttgtcttctggatgagtacca 2306



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 121  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 180
            ||||||||| ||| |||||||| | |||||||||| || |  |  |||| ||||||||||
Sbjct: 2851 actgctgcttctcactaacacatacatgtacagttaaatcgctacagttaacccacttat 2792

                     
Query: 181  tcagaagaa 189
            |||||||||
Sbjct: 2791 tcagaagaa 2783

---

>gb|AF007793.1|AF007793 Zea mays retinoblastoma-related protein 1 (RRB1) mRNA, complete cds
          Length = 4367

 Score =  214 bits (108), Expect = 3e-52
 Identities = 281/339 (82%)
 Strand = Plus / Minus

                                                                        
Query: 330  tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 389
            |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 2624 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 2565

                                                                        
Query: 390  attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 449
            | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 2564 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 2505

                                                                        
Query: 450  tgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtgaaagc 509
            |||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 2504 tgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaacttggtgacagc 2445

                                                                        
Query: 510  aatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatgagact 569
            | |  ||||  ||||||||| |||| |||||| | ||| |||||||| || | ||| |||
Sbjct: 2444 agtagatccaacttggtttgccgcaaaggagacacatatacattatgagatgctgaaact 2385

                                                                        
Query: 570  ttctttggggacatatctggtagatttgagaagggagatgactttggtgatccaggaatt 629
            ||||| |||||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||
Sbjct: 2384 ttcttcggggacatatctggtaaatttgggaaaggagatggcttgggtgatccaggaatt 2325

                                                   
Query: 630  tggctattatgattcttcttgntgtctggatgagcacca 668
            |||| | ||  ||||||||||   |||||||||| ||||
Sbjct: 2324 tggccactagcattcttcttgtcttctggatgagtacca 2286



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 121  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 180
            ||||||||| ||| |||||||| | |||||||||| || |  || |||| | ||||||||
Sbjct: 2831 actgctgcttctcactaacacatacatgtacagttaaatcgctccagttaatccacttat 2772

                     
Query: 181  tcagaagaa 189
            |||||||||
Sbjct: 2771 tcagaagaa 2763

---

>gb|AF007795.1|AF007795 Zea mays retinoblastoma-related protein 2b (RRB2b) mRNA, partial cds
          Length = 2538

 Score =  208 bits (105), Expect = 2e-50
 Identities = 201/233 (86%)
 Strand = Plus / Minus

                                                                        
Query: 418  tatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgatac 477
            |||||||||| |||||||||| ||||| |||||||||||||||||||| |||||| || |
Sbjct: 1672 tatttatagcagccaaatctttagatgggctctgataagcatgggtgccttcaccaatgc 1613

                                                                        
Query: 478  aagcataaaaactcctcgaacttggtgaaagcaatgcatccttcttggtttgacgcagag 537
            | |||||||||||||| ||||||||||| |||| |  |||| |||||||||| |||| ||
Sbjct: 1612 atgcataaaaactcctggaacttggtgacagcagtaaatccatcttggtttgccgcaaag 1553

                                                                        
Query: 538  gagaaatataaacattatgggaagatgagactttctttggggacatatctggtagatttg 597
            |||| | ||| |||||||| |||| ||| ||||||||||||||||||||||||| |||||
Sbjct: 1552 gagacacatatacattatgagaagctgaaactttctttggggacatatctggtaaatttg 1493

                                                                 
Query: 598  agaagggagatgactttggtgatccaggaatttggctattatgattcttcttg 650
             ||| ||||||  ||| ||||||||||||| ||||| | ||  ||||||||||
Sbjct: 1492 ggaaaggagatagcttcggtgatccaggaacttggccactagcattcttcttg 1440

---

>gb|BT016548.1| Zea mays clone Contig381 mRNA sequence
          Length = 1088

 Score =  206 bits (104), Expect = 7e-50
 Identities = 280/339 (82%)
 Strand = Plus / Minus

                                                                       
Query: 330 tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 389
           |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 525 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 466

                                                                       
Query: 390 attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 449
           | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 465 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 406

                                                                       
Query: 450 tgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtgaaagc 509
           |||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 405 tgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaacttggtgacagc 346

                                                                       
Query: 510 aatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatgagact 569
           | |  ||||  ||||||||| |||| |||||| | ||| |||||||| || | ||| |||
Sbjct: 345 agtagatccaacttggtttgccgcaaaggagacacatatacattatgagatgctgaaact 286

                                                                       
Query: 570 ttctttggggacatatctggtagatttgagaagggagatgactttggtgatccaggaatt 629
           ||||| |||||||||||||||| ||||| ||| |||||||  || |||||||||||||||
Sbjct: 285 ttcttcggggacatatctggtaaatttgggaaaggagatgggttgggtgatccaggaatt 226

                                                  
Query: 630 tggctattatgattcttcttgntgtctggatgagcacca 668
           |||| | ||  ||||||||||   |||||||||| ||||
Sbjct: 225 tggccactagcattcttcttgtcttctggatgagtacca 187



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                       
Query: 121 actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 180
           ||||||||| ||| |||||||| | |||||||||| || |  |  |||| ||||||||||
Sbjct: 732 actgctgcttctcactaacacatacatgtacagttaaatcgctacagttaacccacttat 673

                    
Query: 181 tcagaagaa 189
           |||||||||
Sbjct: 672 tcagaagaa 664

---

>gb|U52099.2|ZMU52099 Zea mays retinoblastoma-like protein (ZmRB) mRNA, partial cds
          Length = 1841

 Score =  206 bits (104), Expect = 7e-50
 Identities = 280/339 (82%)
 Strand = Plus / Minus

                                                                        
Query: 330  tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 389
            |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 1510 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 1451

                                                                        
Query: 390  attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 449
            | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 1450 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 1391

                                                                        
Query: 450  tgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtgaaagc 509
            |||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 1390 tgataagcatgggtgccttcaccaatgcatgcataaaaactcctggaacttggtgacagc 1331

                                                                        
Query: 510  aatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatgagact 569
            | |  ||||  ||||||||| |||| |||||| | ||| |||||||| || | ||| |||
Sbjct: 1330 agtagatccaacttggtttgccgcaaaggagacacatatacattatgagatgctgaaact 1271

                                                                        
Query: 570  ttctttggggacatatctggtagatttgagaagggagatgactttggtgatccaggaatt 629
            ||||| |||||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||
Sbjct: 1270 ttcttcggggacatatctggtaaatttgggaaaggagatggcttgggtgatccaggaatt 1211

                                                   
Query: 630  tggctattatgattcttcttgntgtctggatgagcacca 668
            || | | ||  ||||||||||   |||||||||| ||||
Sbjct: 1210 tgcccactagcattcttcttgtcttctggatgagtacca 1172



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 121  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 180
            ||||||||| ||| |||||||| | |||||||||| || |  || |||| | ||||||||
Sbjct: 1718 actgctgcttctcactaacacatacatgtacagttaaatcgctctagttaatccacttat 1659

                
Query: 181  tcag 184
            ||||
Sbjct: 1658 tcag 1655

---

>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0080I08, complete sequence
          Length = 197156

 Score =  137 bits (69), Expect = 5e-29
 Identities = 99/109 (90%)
 Strand = Plus / Minus

                                                                         
Query: 525   gtttgacgcagaggagaaatataaacattatgggaagatgagactttctttggggacata 584
             ||||| || |||||||| | ||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 37706 gtttgtcgtagaggagagacatacacattatgagaagatgagactttcttcggggacata 37647

                                                              
Query: 585   tctggtagatttgagaagggagatgactttggtgatccaggaatttggc 633
             ||||||| ||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 37646 tctggtaaatttgagaaaggagatgacttgggtgatccaggaatttggc 37598



 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                         
Query: 297   gcaggatccgaagaggcagggacaccatttggttggcccagactgccagctaccactgaa 356
             |||||||||||||||||||   ||||||| |||||||||||||| ||||| ||||| || 
Sbjct: 38221 gcaggatccgaagaggcagaaccaccattgggttggcccagactaccagccaccaccgag 38162

                                                         
Query: 357   tcgctaaccatgtcaaagtttattcgagtgttgattctcctggt 400
             || || |||||||| ||||||||||| |||||||||||||||||
Sbjct: 38161 tcactcaccatgtcgaagtttattcgtgtgttgattctcctggt 38118



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                         
Query: 418   tatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgatac 477
             |||||||||| |||| ||| |  |||| ||||||| |||| || |||||||||||||| |
Sbjct: 37983 tatttatagcagccagatccttggatgggctctgaaaagcttgagtgctttcaccgatgc 37924

                                                      
Query: 478   aagcataaaaactcctcgaacttggtgaaagcaatgcatcc 518
             | || || |||||||  ||||||||||||||||||||||||
Sbjct: 37923 acgcgtagaaactccgtgaacttggtgaaagcaatgcatcc 37883



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 168   ttcacccacttattcagaagaac 190
             |||||||||||||||||||||||
Sbjct: 38350 ttcacccacttattcagaagaac 38328

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  137 bits (69), Expect = 5e-29
 Identities = 99/109 (90%)
 Strand = Plus / Minus

                                                                            
Query: 525      gtttgacgcagaggagaaatataaacattatgggaagatgagactttctttggggacata 584
                ||||| || |||||||| | ||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 18772439 gtttgtcgtagaggagagacatacacattatgagaagatgagactttcttcggggacata 18772380

                                                                 
Query: 585      tctggtagatttgagaagggagatgactttggtgatccaggaatttggc 633
                ||||||| ||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 18772379 tctggtaaatttgagaaaggagatgacttgggtgatccaggaatttggc 18772331



 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                            
Query: 297      gcaggatccgaagaggcagggacaccatttggttggcccagactgccagctaccactgaa 356
                |||||||||||||||||||   ||||||| |||||||||||||| ||||| ||||| || 
Sbjct: 18772954 gcaggatccgaagaggcagaaccaccattgggttggcccagactaccagccaccaccgag 18772895

                                                            
Query: 357      tcgctaaccatgtcaaagtttattcgagtgttgattctcctggt 400
                || || |||||||| ||||||||||| |||||||||||||||||
Sbjct: 18772894 tcactcaccatgtcgaagtttattcgtgtgttgattctcctggt 18772851



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                            
Query: 418      tatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgatac 477
                |||||||||| |||| ||| |  |||| ||||||| |||| || |||||||||||||| |
Sbjct: 18772716 tatttatagcagccagatccttggatgggctctgaaaagcttgagtgctttcaccgatgc 18772657

                                                         
Query: 478      aagcataaaaactcctcgaacttggtgaaagcaatgcatcc 518
                | || || |||||||  ||||||||||||||||||||||||
Sbjct: 18772656 acgcgtagaaactccgtgaacttggtgaaagcaatgcatcc 18772616



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 168      ttcacccacttattcagaagaac 190
                |||||||||||||||||||||||
Sbjct: 18773083 ttcacccacttattcagaagaac 18773061

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  137 bits (69), Expect = 5e-29
 Identities = 99/109 (90%)
 Strand = Plus / Minus

                                                                            
Query: 525      gtttgacgcagaggagaaatataaacattatgggaagatgagactttctttggggacata 584
                ||||| || |||||||| | ||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 18932512 gtttgtcgtagaggagagacatacacattatgagaagatgagactttcttcggggacata 18932453

                                                                 
Query: 585      tctggtagatttgagaagggagatgactttggtgatccaggaatttggc 633
                ||||||| ||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 18932452 tctggtaaatttgagaaaggagatgacttgggtgatccaggaatttggc 18932404



 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                            
Query: 297      gcaggatccgaagaggcagggacaccatttggttggcccagactgccagctaccactgaa 356
                |||||||||||||||||||   ||||||| |||||||||||||| ||||| ||||| || 
Sbjct: 18933027 gcaggatccgaagaggcagaaccaccattgggttggcccagactaccagccaccaccgag 18932968

                                                            
Query: 357      tcgctaaccatgtcaaagtttattcgagtgttgattctcctggt 400
                || || |||||||| ||||||||||| |||||||||||||||||
Sbjct: 18932967 tcactcaccatgtcgaagtttattcgtgtgttgattctcctggt 18932924



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                            
Query: 418      tatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgatac 477
                |||||||||| |||| ||| |  |||| ||||||| |||| || |||||||||||||| |
Sbjct: 18932789 tatttatagcagccagatccttggatgggctctgaaaagcttgagtgctttcaccgatgc 18932730

                                                         
Query: 478      aagcataaaaactcctcgaacttggtgaaagcaatgcatcc 518
                | || || |||||||  ||||||||||||||||||||||||
Sbjct: 18932729 acgcgtagaaactccgtgaacttggtgaaagcaatgcatcc 18932689



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 168      ttcacccacttattcagaagaac 190
                |||||||||||||||||||||||
Sbjct: 18933156 ttcacccacttattcagaagaac 18933134

---

>gb|AY109777.1| Zea mays CL1187_-3 mRNA sequence
          Length = 2920

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                        
Query: 490  tcctcgaacttggtgaaagcaatgcatccttcttggtttgacgcagaggagaaatataaa 549
            |||| ||||||||||| |||| |  |||| |||||||||| |||| |||||| | ||| |
Sbjct: 1029 tcctggaacttggtgacagcagtaaatccatcttggtttgccgcaaaggagacacatata 970

                                                                        
Query: 550  cattatgggaagatgagactttctttggggacatatctggtagatttgagaagggagatg 609
            ||||||| |||| ||| ||||||||||||||||||||||||| ||||| ||| |||||| 
Sbjct: 969  cattatgagaagctgaaactttctttggggacatatctggtaaatttgggaaaggagata 910

                                                     
Query: 610  actttggtgatccaggaatttggctattatgattcttcttg 650
             ||| ||||||||||||| ||||| | ||  ||||||||||
Sbjct: 909  gcttcggtgatccaggaacttggccactagcattcttcttg 869



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 114/137 (83%)
 Strand = Plus / Minus

                                                                        
Query: 319  caccatttggttggcccagactgccagctaccactgaatcgctaaccatgtcaaagttta 378
            |||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 1200 caccatttggctggcctagactaccagctaccactgagtcgctcaccatgtcaaagttta 1141

                                                                        
Query: 379  ttcgagtgttgattctcctggtggtgtaatttagacaattatttatagcggccaaatctt 438
             |||| |||| | |||||      | |||||||| |   |||||||||| ||||||||||
Sbjct: 1140 atcgactgtttactctccgaccattataatttaggcggctatttatagcagccaaatctt 1081

                             
Query: 439  cagatgagctctgataa 455
             ||||| ||||||||||
Sbjct: 1080 tagatgggctctgataa 1064



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 121  actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 180
            ||||||| | ||| |||||||| | |||||||||| || || || |||  ||||||||||
Sbjct: 1389 actgctggttctcactaacacatacatgtacagttaaatcactccagtcaacccacttat 1330

                     
Query: 181  tcagaagaa 189
            |||||||||
Sbjct: 1329 tcagaagaa 1321

---

>gb|AY109345.1| Zea mays CL1187_1 mRNA sequence
          Length = 4369

 Score =  119 bits (60), Expect = 1e-23
 Identities = 149/179 (83%)
 Strand = Plus / Minus

                                                                        
Query: 490  tcctcgaacttggtgaaagcaatgcatccttcttggtttgacgcagaggagaaatataaa 549
            |||| ||||||||||| |||| |  ||||  ||||||||| |||| |||||| | ||| |
Sbjct: 2484 tcctggaacttggtgacagcagtagatccaacttggtttgccgcaaaggagacacatata 2425

                                                                        
Query: 550  cattatgggaagatgagactttctttggggacatatctggtagatttgagaagggagatg 609
            ||||||| || | ||| |||||||| |||||||||||||||| ||||| ||| |||||||
Sbjct: 2424 cattatgagatgctgaaactttcttcggggacatatctggtaaatttgggaaaggagatg 2365

                                                                       
Query: 610  actttggtgatccaggaatttggctattatgattcttcttgntgtctggatgagcacca 668
             ||| ||||||||||||||||||| | ||  ||||||||||   |||||||||| ||||
Sbjct: 2364 gcttgggtgatccaggaatttggccactagcattcttcttgtcttctggatgagtacca 2306



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 102/126 (80%)
 Strand = Plus / Minus

                                                                        
Query: 330  tggcccagactgccagctaccactgaatcgctaaccatgtcaaagtttattcgagtgttg 389
            |||||||||||||| ||||||||||| || || |||||||| || |||| |||| |||| 
Sbjct: 2644 tggcccagactgccggctaccactgagtcactcaccatgtcgaaatttaatcgactgttt 2585

                                                                        
Query: 390  attctcctggtggtgtaatttagacaattatttatagcggccaaatcttcagatgagctc 449
            | | |||||    | |||||||| |   |||||||||| |||||||| | ||||| ||||
Sbjct: 2584 actttcctgccattataatttaggcggctatttatagcagccaaatccttagatgggctc 2525

                  
Query: 450  tgataa 455
            ||||||
Sbjct: 2524 tgataa 2519



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 122  ctgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttatt 181
            |||||||| ||| |||||||| | |||||||||| || |  || |||| | |||||||||
Sbjct: 2850 ctgctgcttctcactaacacatacatgtacagttaaatcgctccagttaatccacttatt 2791

                    
Query: 182  cagaagaa 189
            ||||||||
Sbjct: 2790 cagaagaa 2783

---

>emb|AJ279062.2|ZMA279062 Zea mays rbr2 gene for retinoblastoma-related protein, exons 1-16
          Length = 8716

 Score =  113 bits (57), Expect = 8e-22
 Identities = 84/93 (90%)
 Strand = Plus / Minus

                                                                        
Query: 418  tatttatagcggccaaatcttcagatgagctctgataagcatgggtgctttcaccgatac 477
            |||||||||| |||||||||| ||||| |||||||||||||||||||| |||||| || |
Sbjct: 6748 tatttatagcagccaaatctttagatgggctctgataagcatgggtgccttcaccaatgc 6689

                                             
Query: 478  aagcataaaaactcctcgaacttggtgaaagca 510
            | |||||||||||||| ||||||||||| ||||
Sbjct: 6688 atgcataaaaactcctggaacttggtgacagca 6656



 Score =  105 bits (53), Expect = 2e-19
 Identities = 98/113 (86%)
 Strand = Plus / Minus

                                                                        
Query: 521  cttggtttgacgcagaggagaaatataaacattatgggaagatgagactttctttgggga 580
            ||||||||| |||| |||||| | ||| |||||||| |||| ||| ||||||||||||||
Sbjct: 6088 cttggtttgccgcaaaggagacacatatacattatgagaagctgaaactttctttgggga 6029

                                                                 
Query: 581  catatctggtagatttgagaagggagatgactttggtgatccaggaatttggc 633
            ||||||||||| ||||| ||| ||||||  ||| ||||||||||||| |||||
Sbjct: 6028 catatctggtaaatttgggaaaggagatagcttcggtgatccaggaacttggc 5976



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                        
Query: 319  caccatttggttggcccagactgccagctaccactgaatcgctaaccatgtcaaagttta 378
            |||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 6940 caccatttggctggcctagactaccagctaccactgagtcgctcaccatgtcaaagttta 6881

                      
Query: 379  ttcgagtgtt 388
             |||| ||||
Sbjct: 6880 atcgactgtt 6871

---

>gb|AY117036.1| Cocos nucifera retinoblastoma-like protein (Rb1) mRNA, complete cds
          Length = 3699

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 134/162 (82%)
 Strand = Plus / Minus

                                                                        
Query: 446  gctctgataagcatgggtgctttcaccgatacaagcataaaaactcctcgaacttggtga 505
            ||||||||||||||| ||||| || || | |||||||||| | ||| | || ||||||||
Sbjct: 3197 gctctgataagcatgagtgctctcgccaacacaagcataatagctcttggagcttggtga 3138

                                                                        
Query: 506  aagcaatgcatccttcttggtttgacgcagaggagaaatataaacattatgggaagatga 565
            ||||||||||||| |||| | |   |||| |||||||| ||| |||||||| | ||  ||
Sbjct: 3137 aagcaatgcatccatctttgatgatcgcaaaggagaaacatatacattatgagcagcaga 3078

                                                      
Query: 566  gactttctttggggacatatctggtagatttgagaagggaga 607
             ||||||||||| ||||||||||| ||||||| ||| |||||
Sbjct: 3077 aactttctttggtgacatatctggaagatttgggaaaggaga 3036

---

>dbj|AB015221.1| Nicotiana tabacum NtRb1 mRNA, complete cds
          Length = 3271

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 446  gctctgataagcatgggtgctttcaccgatacaagcataa 485
            ||||||||||||||| |||||||| || | ||||||||||
Sbjct: 2890 gctctgataagcatgagtgctttctcccacacaagcataa 2851

---

>gb|AY699399.1| Nicotiana benthamiana retinoblastoma protein mRNA, complete cds
          Length = 3012

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 446  gctctgataagcatgggtgctttcaccgatacaagcataa 485
            ||||||||||||||| |||||||| || | ||||||||||
Sbjct: 2826 gctctgataagcatgagtgctttctcccacacaagcataa 2787

---

>gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, complete sequence
          Length = 185700

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 53     tttttcaacagctggaaaataaaataa 79
              |||| ||||||||||||||||||||||
Sbjct: 120215 ttttacaacagctggaaaataaaataa 120189

---

>gb|AF384675.1| Mus musculus FGF15 (Fgf15) gene, complete cds; BC1 scRNA gene, complete
              sequence; hypothetical protein and cyclin D1 (Ccnd1) genes,
              complete cds
          Length = 154480

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 439    cagatgagctctgataagcat 459
              |||||||||||||||||||||
Sbjct: 114175 cagatgagctctgataagcat 114195

---

>gb|AC123804.3| Mus musculus BAC clone RP24-140B5 from chromosome 7, complete sequence
          Length = 145046

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 439    cagatgagctctgataagcat 459
              |||||||||||||||||||||
Sbjct: 111812 cagatgagctctgataagcat 111792

---

>gb|AC111653.8| Rattus norvegicus 2 BAC CH230-108E11 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 247105

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 403    tgtaatttagacaattatttatagc 427
              ||||||||||||||||||| |||||
Sbjct: 121889 tgtaatttagacaattattaatagc 121913

---

>emb|AL160007.10| Human DNA sequence from clone RP4-798P15 on chromosome 1q24.1-25.2
             Contains the 3' end of a gene for regucalcin gene promotor
             region related protein (RGPR), DKFZp686C2486, complete
             sequence
          Length = 112732

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 308   agaggcagggacaccatttgg 328
             |||||||||||||||||||||
Sbjct: 28452 agaggcagggacaccatttgg 28432

---

>emb|AL139156.11| Human DNA sequence from clone RP4-800M22 on chromosome 1p32.3-34.1
              Contains the 5' end of the MADHIP gene for mothers against
              decapentaplegic (MAD) homolog (Drosophila) interacting
              protein receptor activation anchor, a pseudogene similar to
              part of alcohol dehydrogenase 5 (class III) chi
              polypeptidem (ADH5), a transformer-2 alpha (TRA2A)
              pseudogene, a IAP-associated factor VIAF1 (VIAF1)
              pseudogene, a pseudogene similar to part of ribosomal
              protein L9 (RPL9), the 3' end of the gene for a novel
              protein similar to RNA polymerase B transcription factor 3
              (MGC23908) and a CpG island, complete sequence
          Length = 138985

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 540    gaaatataaacattatgggaa 560
              |||||||||||||||||||||
Sbjct: 132064 gaaatataaacattatgggaa 132084

---

>gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosome 7, complete sequence
          Length = 221679

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 439   cagatgagctctgataagcat 459
             |||||||||||||||||||||
Sbjct: 16940 cagatgagctctgataagcat 16920

---

>gb|AC023892.35|AC023892 Homo sapiens 12 BAC RP11-937H2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 53     tttttcaacagctggaaaataaaat 77
              |||| ||||||||||||||||||||
Sbjct: 164082 ttttacaacagctggaaaataaaat 164058

---

>gb|AC151338.2| Xenopus tropicalis clone ISB-347F7, complete sequence
          Length = 73907

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    agctggaaaataaaataatac 82
             |||||||||||||||||||||
Sbjct: 48347 agctggaaaataaaataatac 48327

---

>gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, complete sequence
          Length = 192937

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 64    ctggaaaataaaataatacat 84
             |||||||||||||||||||||
Sbjct: 53536 ctggaaaataaaataatacat 53516

---

>gb|AC105754.3| Homo sapiens chromosome 1 clone RP4-814E15, complete sequence
          Length = 133799

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 540   gaaatataaacattatgggaa 560
             |||||||||||||||||||||
Sbjct: 35426 gaaatataaacattatgggaa 35446

---

>gb|AF230739.1|AF230739 Euphorbia esula retinoblastoma-like protein mRNA, partial cds
          Length = 2625

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 545  ataaacattatgggaagatgagactttctttggggacatatctgg 589
            |||||||||||| || |  || ||||| |||||||||||||||||
Sbjct: 2115 ataaacattatgtgatgcagaaactttttttggggacatatctgg 2071



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 446  gctctgataagcatgggtgctttc 469
            ||||||||||||||| ||||||||
Sbjct: 2214 gctctgataagcatgagtgctttc 2191

---

>emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in linkage group 22,
              complete sequence
          Length = 164475

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     ccagcttacactactgttttt 57
              |||||||||||||||||||||
Sbjct: 115434 ccagcttacactactgttttt 115414

---

>gb|AY832292.1| Platanus occidentalis ribosomal protein S4 (rps4) gene, partial
           cds; mitochondrial
          Length = 961

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 615 ggtgatccaggaatttggctattat 639
           ||||||||||||||||| |||||||
Sbjct: 510 ggtgatccaggaatttgcctattat 486

---

>gb|AY832286.1| Calycanthus floridus ribosomal protein S4 (rps4) gene, partial cds;
           mitochondrial
          Length = 959

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 615 ggtgatccaggaatttggctattat 639
           ||||||||||||||||| |||||||
Sbjct: 510 ggtgatccaggaatttgcctattat 486

---

>dbj|AB071771.1| Capsicum annuum rps4 gene for ribosomal protein S4, partial cds
          Length = 393

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 615 ggtgatccaggaatttggctattat 639
           ||||||||||||||||| |||||||
Sbjct: 46  ggtgatccaggaatttgcctattat 22

---

>gb|AC113031.11| Mus musculus chromosome 14, clone RP23-220B20, complete sequence
          Length = 250215

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 405    taatttagacaattatttat 424
              ||||||||||||||||||||
Sbjct: 159238 taatttagacaattatttat 159219

---

>emb|CR352310.15| Zebrafish DNA sequence from clone CH211-254E10 in linkage group 24,
             complete sequence
          Length = 181023

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   atttagacaattatttatag 426
             ||||||||||||||||||||
Sbjct: 42573 atttagacaattatttatag 42554

---

>ref|XM_647750.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (103.t00024)
          partial mRNA
          Length = 1524

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 65 tggaaaataaaataatacat 84
          ||||||||||||||||||||
Sbjct: 57 tggaaaataaaataatacat 38

---

>gb|AC111144.8| Mus musculus chromosome 6, clone RP23-373C23, complete sequence
          Length = 198667

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tcaacagctggaaaataaaa 76
             ||||||||||||||||||||
Sbjct: 72506 tcaacagctggaaaataaaa 72487

---

>emb|X63603.1|NTACTI N.tabacum gene for actin
          Length = 5496

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   atattgccggttattatttt 35
            ||||||||||||||||||||
Sbjct: 2122 atattgccggttattatttt 2103

---

>emb|AL591982.1| Listeria monocytogenes strain EGD, complete genome, segment 10/12
          Length = 295050

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 228    gatgctcatttatttgctcaagaa 251
              |||||| |||||||||||||||||
Sbjct: 280580 gatgcttatttatttgctcaagaa 280557

---

>gb|AC160537.6| Mus musculus chromosome 8, clone RP24-95H19, complete sequence
          Length = 188409

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    aaaataaaataatacatcag 87
             ||||||||||||||||||||
Sbjct: 55561 aaaataaaataatacatcag 55580

---

>emb|CR354422.7| Zebrafish DNA sequence from clone CH211-129O4 in linkage group 20,
             complete sequence
          Length = 177570

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   gctcatttatttgctcaaga 250
             ||||||||||||||||||||
Sbjct: 51866 gctcatttatttgctcaaga 51847

---

>emb|AL592283.5| Mouse DNA sequence from clone RP23-386C23 on chromosome 4, complete
              sequence
          Length = 197763

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tacaggagatgctcatttat 240
              ||||||||||||||||||||
Sbjct: 190135 tacaggagatgctcatttat 190154

---

>dbj|AK056925.1| Homo sapiens cDNA FLJ32363 fis, clone PUAEN1000081
          Length = 2441

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 548  aacattatgggaagatgagactttcttt 575
            |||||| || ||||||||||||||||||
Sbjct: 1570 aacattgtgtgaagatgagactttcttt 1597

---

>gb|AC068953.9| Homo sapiens chromosome 8, clone CTD1-2019D9, complete sequence
          Length = 176997

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 473    gatacaagcataaaaactcctcgaactt 500
              ||||||||||| ||||||| ||||||||
Sbjct: 154524 gatacaagcatcaaaactcatcgaactt 154497

---

>gb|AC114310.2| Homo sapiens chromosome 5 clone RP11-285K13, complete sequence
          Length = 157366

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 548   aacattatgggaagatgagactttcttt 575
             |||||| || ||||||||||||||||||
Sbjct: 41083 aacattgtgtgaagatgagactttcttt 41110

---

>gb|AC114956.2| Homo sapiens chromosome 5 clone RP11-159F24, complete sequence
          Length = 104726

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 548   aacattatgggaagatgagactttcttt 575
             |||||| || ||||||||||||||||||
Sbjct: 19579 aacattgtgtgaagatgagactttcttt 19552

---

>gb|AC020708.6| Homo sapiens BAC clone RP11-425B17 from 4, complete sequence
          Length = 208360

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   acttattcagaagaacagaa 194
             ||||||||||||||||||||
Sbjct: 72559 acttattcagaagaacagaa 72578

---

>gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, complete sequence
          Length = 201260

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     aaaataaaataatacatcag 87
              ||||||||||||||||||||
Sbjct: 154580 aaaataaaataatacatcag 154599

---

>gb|AC007755.6|AC007755 Drosophila melanogaster, chromosome 3R, region 89A-89B, BAC clone
              BACR04C07, complete sequence
          Length = 173660

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     aaaataaaataatacatcag 87
              ||||||||||||||||||||
Sbjct: 111395 aaaataaaataatacatcag 111376

---

>gb|AC008482.5|AC008482 Homo sapiens chromosome 5 clone CTC-402A15, complete sequence
          Length = 172004

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 270    ttccttgacaagaaactaaatgaa 293
              ||||||||||||||||| ||||||
Sbjct: 109151 ttccttgacaagaaactcaatgaa 109174

---

>ref|NM_198566.1| Homo sapiens FLJ32363 protein (FLJ32363), mRNA
          Length = 2441

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 548  aacattatgggaagatgagactttcttt 575
            |||||| || ||||||||||||||||||
Sbjct: 1570 aacattgtgtgaagatgagactttcttt 1597

---

>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 550     cattatgggaagatgagactttct 573
               |||||||||||||||| |||||||
Sbjct: 3034055 cattatgggaagatgatactttct 3034032

---

>gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides retinoblastoma-related protein
            1 (RB1) mRNA, complete cds
          Length = 3572

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 446  gctctgataagcatgggtgctttcaccgatacaagcataa 485
            |||||| |||||||||||||| || || | ||||||||||
Sbjct: 3142 gctctggtaagcatgggtgctctctccaacacaagcataa 3103

---

>emb|BX005094.3| Zebrafish DNA sequence from clone CH211-180H17 in linkage group 3,
             complete sequence
          Length = 155431

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   acacagatgtacagttgaag 159
             ||||||||||||||||||||
Sbjct: 63768 acacagatgtacagttgaag 63787

---

>gb|BC036867.1| Homo sapiens FLJ32363 protein, mRNA (cDNA clone MGC:46448
            IMAGE:5198039), complete cds
          Length = 2424

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 548  aacattatgggaagatgagactttcttt 575
            |||||| || ||||||||||||||||||
Sbjct: 1518 aacattgtgtgaagatgagactttcttt 1545

---

>emb|BX088722.8| Zebrafish DNA sequence from clone CH211-253P18 in linkage group 20,
             complete sequence
          Length = 195359

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   gctcatttatttgctcaaga 250
             ||||||||||||||||||||
Sbjct: 75723 gctcatttatttgctcaaga 75704

---

>gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49 of 118 of the
             complete sequence
          Length = 236475

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    aaaataaaataatacatcag 87
             ||||||||||||||||||||
Sbjct: 61812 aaaataaaataatacatcag 61831

---

>dbj|AP003468.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1205B2, complete
             sequence
          Length = 177515

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 473   gatacaagcataaaaactcctcgaactt 500
             ||||||||||| ||||||| ||||||||
Sbjct: 48535 gatacaagcatcaaaactcatcgaactt 48562

---

>gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, complete sequence
          Length = 170634

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 403    tgtaatttagacaattattt 422
              ||||||||||||||||||||
Sbjct: 127303 tgtaatttagacaattattt 127284

---

>emb|X83768.1|HSNFKB2PR H.sapiens NFKB2/LYT-10 gene promoter region
          Length = 2160

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 329  ttggcccagactgccagctaccac 352
            |||||||||||||||||| |||||
Sbjct: 1608 ttggcccagactgccagccaccac 1631


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,032,082
Number of Sequences: 3902068
Number of extensions: 8032082
Number of successful extensions: 165856
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 165580
Number of HSP's gapped (non-prelim): 275
length of query: 668
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 645
effective length of database: 17,143,297,704
effective search space: 11057427019080
effective search space used: 11057427019080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---