ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25a23 |
|---|---|
| Clone Library Name | barley_pub |
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 33.1 bits (74), Expect = 0.53 Identities = 15/60 (25%), Positives = 21/60 (35%) Frame = +3 Query: 369 DQQGHRPRSCHCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIHHHHQPL*NQHRPHSH 548 ++ H + H H H + HH + H HHHH + H PH H Sbjct: 131 EEHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHHHHLGYHHHHAPHHHHH---HHHAPHHH 187 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 3/33 (9%) Frame = +3 Query: 459 GYRHHSCWQEQHCIHHHHQPL*NQHR---PHSH 548 GY HH H HHHH P + H PH H Sbjct: 167 GYHHHHAPHHHH--HHHHAPHHHHHHHHAPHHH 197 Score = 30.0 bits (66), Expect = 4.5 Identities = 11/29 (37%), Positives = 13/29 (44%) Frame = +3 Query: 462 YRHHSCWQEQHCIHHHHQPL*NQHRPHSH 548 + HH H HHHH P + H H H Sbjct: 196 HHHHHHHAPHHHHHHHHAPHHHHHHHHGH 224 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/56 (28%), Positives = 17/56 (30%) Frame = +3 Query: 381 HRPRSCHCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIHHHHQPL*NQHRPHSH 548 H P H H H HH H HHHH P + H H H Sbjct: 64 HHPEEHHEPHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHLGHHH 119 Score = 29.3 bits (64), Expect = 7.7 Identities = 17/67 (25%), Positives = 20/67 (29%) Frame = +3 Query: 348 H*AFQGADQQGHRPRSCHCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIHHHHQPL*N 527 H G H H H H D+ + HH H HHHH + Sbjct: 238 HHHHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDA--H 295 Query: 528 QHRPHSH 548 H H H Sbjct: 296 HHHHHHH 302 Score = 29.3 bits (64), Expect = 7.7 Identities = 18/71 (25%), Positives = 21/71 (29%) Frame = +3 Query: 336 PSAGH*AFQGADQQGHRPRSCHCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIHHHHQ 515 P H G H H H H D+ + HH H HHHH Sbjct: 214 PHHHHHHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHHHD 273 Query: 516 PL*NQHRPHSH 548 + H H H Sbjct: 274 A--HHHHHHHH 282
>SELPB_BRARE (Q98SV0) Selenoprotein Pb precursor (zSelPb)| Length = 265 Score = 31.2 bits (69), Expect = 2.0 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +3 Query: 447 PLDSGYRHHSCWQEQHCIHHHHQPL*NQHR 536 P+ + + HH E H HHHH P N H+ Sbjct: 211 PVTAAHHHHHQQHEPH--HHHHNPYPNSHK 238
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = +3 Query: 366 ADQQGHRPRSCHCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIH 503 A QQ H H +Q HL MQ+ H L + H Q+QH H Sbjct: 18 AQQQQHAQHQQHAQQQQHHLHMQQAQHHL---HLSHQQAQQQHMQH 60
>STAR_DROME (P42519) Protein Star| Length = 597 Score = 30.8 bits (68), Expect = 2.6 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +3 Query: 399 HCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIHHHHQPL 521 HC ++S ++ + P + H Q+QH HHHH L Sbjct: 202 HCCQKSTGMESRARTSPQQIQHPHRQHHQQQHHHHHHHHHL 242
>GBF_DICDI (P36417) G-box-binding factor (GBF)| Length = 708 Score = 30.4 bits (67), Expect = 3.4 Identities = 21/62 (33%), Positives = 26/62 (41%) Frame = +3 Query: 360 QGADQQGHRPRSCHCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIHHHHQPL*NQHRP 539 Q QQ H+ H L+Q H Q Q+ +HH Q+Q HH Q QH Sbjct: 171 QMQQQQHHQQMQHHQLQQHQH-QHQQQQQQQQHQQQHHQQQQQQQQQHHQQQ----QHHQ 225 Query: 540 HS 545 HS Sbjct: 226 HS 227
>H15_DROME (Q94890) T-box protein H15| Length = 660 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +3 Query: 456 SGYRHHSCWQEQHCIHHHHQPL*NQHRPHSH 548 S + HH H HHHH PL N H H+H Sbjct: 47 SSHHHH------HQNHHHHHPL-NNHHNHNH 70
>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining| factor) Length = 395 Score = 30.0 bits (66), Expect = 4.5 Identities = 19/72 (26%), Positives = 27/72 (37%) Frame = +3 Query: 333 DPSAGH*AFQGADQQGHRPRSCHCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIHHHH 512 D GH Q QQ + + H +Q F+ Q+ + H Q++ H HH Sbjct: 137 DIPTGHLQQQQQQQQQQQFHNHHQQQQQFYDHHQQQQQQQQQQQQFHDHHQQKQQFHDHH 196 Query: 513 QPL*NQHRPHSH 548 Q H H H Sbjct: 197 QQQQQFHDHHHH 208 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/50 (30%), Positives = 21/50 (42%) Frame = +3 Query: 399 HCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIHHHHQPL*NQHRPHSH 548 H +Q FH Q+ + H ++Q HHHHQ Q + H H Sbjct: 218 HQQQQQFHDHQQQQQQQQQQQFHDHHQQKQQFHDHHHHQ---QQQQFHDH 264
>ZN394_MOUSE (Q9Z1D9) Zinc finger protein 394 (Zinc finger protein 94) (Zfp-94)| Length = 521 Score = 30.0 bits (66), Expect = 4.5 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Frame = +3 Query: 378 GHRPRSC----HCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIH-HHHQPL*NQHRPH 542 G +P +C C RQS HL + H + Y+ C + H HQ L RP+ Sbjct: 379 GEKPYACPECGECFRQSSHLSRHQRTHASEKYYKCEECGEIVHVSSLFRHQRLHRGERPY 438
>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining| factor) Length = 355 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/41 (36%), Positives = 17/41 (41%) Frame = +3 Query: 420 HLQMQEVLHPLDSGYRHHSCWQEQHCIHHHHQPL*NQHRPH 542 H Q Q+ H HH Q+Q HHHHQ Q H Sbjct: 203 HQQQQQQFHD-----HHHQQQQQQFHDHHHHQQQQQQFHDH 238
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 29.3 bits (64), Expect = 7.7 Identities = 19/58 (32%), Positives = 24/58 (41%) Frame = +3 Query: 360 QGADQQGHRPRSCHCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIHHHHQPL*NQH 533 Q A QQ H+ + H Q Q Q++ PL + HH Q H HH L H Sbjct: 1034 QAAAQQQHQQQQQHQQHQQH--QQQQLHSPLH--HHHHQGHQSHHAQQQHHPQLSPHH 1087
>POU12_BRARE (P56224) POU domain protein 12 (POU domain protein zp-12) (Class| III POU domain protein taichi) (Brain-specific homeobox/POU domain protein 1.1) (Brn-1.1) Length = 437 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%) Frame = +3 Query: 462 YRHHSCWQEQHCIHHHHQ--PL*NQHRPHS 545 + HH Q+QH HHHHQ N H HS Sbjct: 210 HHHHHHHQQQHPHHHHHQHHAGVNSHDSHS 239
>HMH2_DROME (P10035) Homeobox protein H2.0| Length = 418 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%) Frame = +3 Query: 465 RHHSCWQEQHCIHHHHQ----PL*NQHRPHSH 548 R H ++QH HHHHQ L QH+P H Sbjct: 187 RFHQHQKQQHQQHHHHQHHPKHLHQQHKPPPH 218
>NFKB1_DROME (Q94527) Nuclear factor NF-kappa-B p110 subunit (Relish protein)| (Rel-p110) [Contains: Nuclear factor NF-kappa-B p68 subunit (Rel-p68); Nuclear factor NF-kappa-B p49 subunit (Rel-p49)] Length = 971 Score = 28.9 bits (63), Expect = 10.0 Identities = 12/56 (21%), Positives = 26/56 (46%) Frame = +3 Query: 348 H*AFQGADQQGHRPRSCHCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIHHHHQ 515 H A+ HR R+ CL F + Q+ + P+ + W +H ++++++ Sbjct: 544 HDGHNRAEVPSHRNRTIKCLDDLFEIYKQDRISPIKISHHKVEKWFIEHALNNYNR 599
>DISC_DROME (P23792) Protein disconnected| Length = 568 Score = 28.9 bits (63), Expect = 10.0 Identities = 20/56 (35%), Positives = 21/56 (37%) Frame = +3 Query: 372 QQGHRPRSCHCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQHCIHHHHQPL*NQHRP 539 QQ H+ H L S H Q Q H L HH H H HHQ Q P Sbjct: 510 QQQHQQEQHHHLTLSHHHQEQH--HHLG----HHHMGHHHHHHHQHHQQQPQQQSP 559
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/38 (34%), Positives = 15/38 (39%) Frame = +3 Query: 381 HRPRSCHCLRQSFHLQMQEVLHPLDSGYRHHSCWQEQH 494 HR S H L + H YR+HS WQ H Sbjct: 1631 HRSHSDHRLHSDHRSSSEYTHHKSSRDYRYHSDWQMDH 1668 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,909,265 Number of Sequences: 219361 Number of extensions: 926259 Number of successful extensions: 3947 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3360 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3721 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
