Clone Name | rbasd25a23 |
---|---|
Clone Library Name | barley_pub |
>emb|AL139020.5|CNS01DX2 Human chromosome 14 DNA sequence BAC R-164H13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166308 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 410 ccaaagtttccacctccaaatgc 432 ||||||||||||||||||||||| Sbjct: 139316 ccaaagtttccacctccaaatgc 139294
>emb|AL137797.9| Human DNA sequence from clone RP5-1109J22 on chromosome 1 Contains three novel genes, the OTX3 gene for orthodenticle homolog 3 (Drosophila) and a CpG island, complete sequence Length = 105345 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 283 gccctccccctccccagcacca 304 |||||||||||||||||||||| Sbjct: 29008 gccctccccctccccagcacca 29029
>emb|BX005025.16| Zebrafish DNA sequence from clone DKEY-67K20 in linkage group 8, complete sequence Length = 196375 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 309 ccttgccagcaacatcaaatttaaga 334 |||||||| ||||||||||||||||| Sbjct: 71743 ccttgccaccaacatcaaatttaaga 71768
>gb|DQ419514.1| Aspergillus niger strain CBS 513.88 conserved hypothetical protein (An07g08380), conserved hypothetical protein (An07g08390), hypothetical protein (An07g08400), hypothetical protein (An07g08410), and truncated conserved hypothetical protein (An07g08430) genes, complete cds Length = 13123 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 297 cagcaccatcctccttgccagcaaca 322 ||||||||||||||| |||||||||| Sbjct: 2083 cagcaccatcctcctcgccagcaaca 2108
>ref|XM_683265.1| PREDICTED: Danio rerio similar to macrophage expressed gene 1 (LOC559876), mRNA Length = 1809 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 309 ccttgccagcaacatcaaatttaaga 334 |||||||| ||||||||||||||||| Sbjct: 763 ccttgccaccaacatcaaatttaaga 738
>emb|BX470138.7| Zebrafish DNA sequence from clone DKEY-245N4 in linkage group 5, complete sequence Length = 117265 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 513 caacccctgtgaaaccagcatcgcccccat 542 |||||||||||||||| |||||||||||| Sbjct: 35365 caacccctgtgaaacctccatcgcccccat 35394
>emb|BX005020.7| Zebrafish DNA sequence from clone DKEY-237D7 in linkage group 8, complete sequence Length = 202747 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 309 ccttgccagcaacatcaaatttaaga 334 |||||||| ||||||||||||||||| Sbjct: 131005 ccttgccaccaacatcaaatttaaga 130980
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 495 tgtatccaccaccaccaccaac 516 |||||||||||||||||||||| Sbjct: 36151905 tgtatccaccaccaccaccaac 36151884
>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406G08 Length = 144233 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 495 tgtatccaccaccaccaccaac 516 |||||||||||||||||||||| Sbjct: 28918 tgtatccaccaccaccaccaac 28897
>dbj|AK119896.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-C06, full insert sequence Length = 3032 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 495 tgtatccaccaccaccaccaac 516 |||||||||||||||||||||| Sbjct: 174 tgtatccaccaccaccaccaac 153
>emb|AL928845.10| Zebrafish DNA sequence from clone CH211-103N10, complete sequence Length = 72192 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 309 ccttgccagcaacatcaaatttaaga 334 |||||||| ||||||||||||||||| Sbjct: 33195 ccttgccaccaacatcaaatttaaga 33220
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 agtcgtcatcaagaaagtcat 251 ||||||||||||||||||||| Sbjct: 978493 agtcgtcatcaagaaagtcat 978473
>ref|XM_567765.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNK03320) partial mRNA Length = 831 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 agtcgtcatcaagaaagtcat 251 ||||||||||||||||||||| Sbjct: 690 agtcgtcatcaagaaagtcat 710
>ref|XM_502937.1| Yarrowia lipolytica CLIB122, YALI0D17380g predicted mRNA Length = 480 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 cagcaggtcattgagcttttc 360 ||||||||||||||||||||| Sbjct: 468 cagcaggtcattgagcttttc 448
>gb|AC087256.9| Homo sapiens 12q BAC RP11-443N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 149546 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 tttaagacccttcagcaggtcattg 352 ||||||| ||||||||||||||||| Sbjct: 106628 tttaagatccttcagcaggtcattg 106652
>gb|AC080089.5| Homo sapiens BAC clone RP11-785J10 from 4, complete sequence Length = 174023 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 313 gccagcaacatcaaatttaagacccttca 341 |||| |||||||||| ||||||||||||| Sbjct: 54505 gccatcaacatcaaagttaagacccttca 54477
>ref|XM_689624.1| PREDICTED: Danio rerio similar to AT rich interactive domain 2 (ARID, RFX-like) (LOC566352), mRNA Length = 4353 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 ggtcatggagaacaactccat 156 ||||||||||||||||||||| Sbjct: 2889 ggtcatggagaacaactccat 2909
>ref|NM_064557.3| Caenorhabditis elegans Y48B6A.3 (Y48B6A.3) mRNA, complete cds Length = 2800 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 ttgtatccaccaccaccacca 514 ||||||||||||||||||||| Sbjct: 2403 ttgtatccaccaccaccacca 2383
>gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168227 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 tttaagacccttcagcaggtcattg 352 ||||||| ||||||||||||||||| Sbjct: 28410 tttaagatccttcagcaggtcattg 28386
>gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from Sequence-12, complete sequence Length = 196817 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 tttaagacccttcagcaggtcattg 352 ||||||| ||||||||||||||||| Sbjct: 153899 tttaagatccttcagcaggtcattg 153923
>emb|AL110490.1|CEY48B6A Caenorhabditis elegans YAC Y48B6A, complete sequence Length = 101295 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 ttgtatccaccaccaccacca 514 ||||||||||||||||||||| Sbjct: 15273 ttgtatccaccaccaccacca 15253
>emb|AL929171.9| Zebrafish DNA sequence from clone CH211-132P20 in linkage group 4, complete sequence Length = 176577 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 ggtcatggagaacaactccat 156 ||||||||||||||||||||| Sbjct: 15078 ggtcatggagaacaactccat 15098
>gb|AY104407.1| Zea mays PCO114073 mRNA sequence Length = 1726 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccct 520 ||||||||||||||||||||| Sbjct: 68 ccaccaccaccaccaacccct 88
>emb|AL805919.10| Mouse DNA sequence from clone RP23-395M3 on chromosome 4, complete sequence Length = 199130 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 ccaaagtttccacctccaaat 430 ||||||||||||||||||||| Sbjct: 109155 ccaaagtttccacctccaaat 109175
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccct 520 ||||||||||||||||||||| Sbjct: 3801749 ccaccaccaccaccaacccct 3801769
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 cagcaggtcattgagcttttc 360 ||||||||||||||||||||| Sbjct: 2142339 cagcaggtcattgagcttttc 2142359 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 tgtatccaccaccaccacca 514 |||||||||||||||||||| Sbjct: 3087296 tgtatccaccaccaccacca 3087315
>ref|NM_129941.2| Arabidopsis thaliana ATMPK6 (MAP KINASE 6); MAP kinase/ kinase AT2G43790 (ATMPK6) mRNA, complete cds Length = 1598 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 atccaccaccaccaccaacc 517 |||||||||||||||||||| Sbjct: 71 atccaccaccaccaccaacc 90
>gb|AC168269.3| Mus musculus BAC clone RP23-193M17 from chromosome 17, complete sequence Length = 223337 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 168404 ccaccaccaccaccaacccc 168385
>gb|AC163325.7| Mus musculus chromosome 1, clone RP23-76L21, complete sequence Length = 253153 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tccaccaccaccaccaaccc 518 |||||||||||||||||||| Sbjct: 149454 tccaccaccaccaccaaccc 149435
>ref|NM_153675.1| Homo sapiens forkhead box A2 (FOXA2), transcript variant 2, mRNA Length = 2230 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 1364 ccaccaccaccaccaacccc 1383
>ref|NM_021784.3| Homo sapiens forkhead box A2 (FOXA2), transcript variant 1, mRNA Length = 2242 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 1376 ccaccaccaccaccaacccc 1395
>gb|AC156037.6| Mus musculus BAC clone RP23-138L1 from chromosome 12, complete sequence Length = 217016 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 108359 ccaccaccaccaccaacccc 108340
>gb|AC099695.15| Mus musculus chromosome 10, clone RP23-234P12, complete sequence Length = 169161 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 99479 ccaccaccaccaccaacccc 99498
>gb|BC051348.1| Homo sapiens protocadherin beta 13, mRNA (cDNA clone MGC:59713 IMAGE:6483735), complete cds Length = 2771 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ttcttgctggattcagcttc 197 |||||||||||||||||||| Sbjct: 156 ttcttgctggattcagcttc 137
>ref|XM_322210.1| Neurospora crassa OR74A predicted protein (NCU00125.1) partial mRNA Length = 1740 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 1374 ccaccaccaccaccaacccc 1393
>ref|XM_952156.1| Neurospora crassa OR74A hypothetical protein (NCU00125.1) partial mRNA Length = 1740 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 1374 ccaccaccaccaccaacccc 1393
>ref|XM_955474.1| Neurospora crassa OR74A hypothetical protein (NCU05605.1) partial mRNA Length = 1182 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 17 ccaccaccaccaccaacccc 36
>ref|XM_325459.1| Neurospora crassa OR74A hypothetical protein (NCU05605.1) partial mRNA Length = 1182 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 17 ccaccaccaccaccaacccc 36
>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01, complete sequence Length = 88352 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 24049 ccaccaccaccaccaacccc 24030
>ref|NG_000017.2| Homo sapiens protocadherin beta cluster (PCDHB@) on chromosome 5 Length = 257923 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ttcttgctggattcagcttc 197 |||||||||||||||||||| Sbjct: 182246 ttcttgctggattcagcttc 182227
>gb|AE006286.1| Lactococcus lactis subsp. lactis IL1403 section 48 of 218 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 attgagcttttcagggggca 368 |||||||||||||||||||| Sbjct: 6621 attgagcttttcagggggca 6640
>ref|NM_018933.2| Homo sapiens protocadherin beta 13 (PCDHB13), mRNA Length = 3485 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ttcttgctggattcagcttc 197 |||||||||||||||||||| Sbjct: 185 ttcttgctggattcagcttc 166
>gb|AC158616.8| Mus musculus 10 BAC RP23-227E23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 248127 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 203433 ccaccaccaccaccaacccc 203414
>gb|AC133503.4| Mus musculus BAC clone RP24-301O19 from chromosome 19, complete sequence Length = 161150 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 tccccctccccagcaccatc 306 |||||||||||||||||||| Sbjct: 146665 tccccctccccagcaccatc 146646
>gb|AC123808.3| Mus musculus BAC clone RP24-165O16 from chromosome 12, complete sequence Length = 147844 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 87395 ccaccaccaccaccaacccc 87376
>gb|AC125517.4| Mus musculus BAC clone RP24-261P6 from chromosome 3, complete sequence Length = 193517 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 accaccaccaccaacccctg 521 |||||||||||||||||||| Sbjct: 94606 accaccaccaccaacccctg 94625
>gb|AC117225.3| Mus musculus BAC clone RP23-366F3 from 19, complete sequence Length = 149854 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 tccccctccccagcaccatc 306 |||||||||||||||||||| Sbjct: 79522 tccccctccccagcaccatc 79503
>ref|XM_847827.1| PREDICTED: Canis familiaris similar to Disabled homolog 1 (LOC610344), mRNA Length = 2276 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 133 ccaccaccaccaccaacccc 114
>ref|XM_854771.1| PREDICTED: Canis familiaris similar to LYST-interacting protein LIP8, transcript variant 2 (LOC489484), mRNA Length = 1977 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 agggggcagatcaacagggg 380 |||||||||||||||||||| Sbjct: 1494 agggggcagatcaacagggg 1475
>ref|XM_546602.2| PREDICTED: Canis familiaris similar to LYST-interacting protein LIP8, transcript variant 1 (LOC489484), mRNA Length = 2957 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 agggggcagatcaacagggg 380 |||||||||||||||||||| Sbjct: 2205 agggggcagatcaacagggg 2186
>gb|AY358427.1| Homo sapiens clone DNA48314 PCDHB13 (UNQ332) mRNA, complete cds Length = 2738 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ttcttgctggattcagcttc 197 |||||||||||||||||||| Sbjct: 168 ttcttgctggattcagcttc 149
>gb|AC153662.6| Mus musculus BAC clone RP23-24I10 from chromosome 12, complete sequence Length = 216041 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 55074 ccaccaccaccaccaacccc 55055
>gb|AC163007.4| Mus musculus chromosome 1, clone RP23-421G18, complete sequence Length = 195727 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 40452 ccaccaccaccaccaacccc 40471
>gb|BC033068.1| Homo sapiens protocadherin beta 13, mRNA (cDNA clone MGC:45607 IMAGE:5446016), complete cds Length = 2771 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ttcttgctggattcagcttc 197 |||||||||||||||||||| Sbjct: 156 ttcttgctggattcagcttc 137
>ref|XM_503202.1| Yarrowia lipolytica CLIB122, YALI0D23727g predicted mRNA Length = 2304 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 tgtatccaccaccaccacca 514 |||||||||||||||||||| Sbjct: 5 tgtatccaccaccaccacca 24
>emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on chromosome 9q33.1-34.12 Contains three novel genes, the 3' end of the LHX2 gene for LIM homeobox protein 2 and four CpG islands, complete sequence Length = 221887 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 tttgcaagcactacattatt 103 |||||||||||||||||||| Sbjct: 23120 tttgcaagcactacattatt 23101
>emb|AL121722.9|HSJ788L20 Human DNA sequence from clone RP4-788L20 on chromosome 20 Contains the FOXA2 gene for forkhead box A2, a novel gene, the 5' end of the C20orf56 gene for chromosome 20 open reading frame 56, the 5' end of a novel gene and five CpG islands, complete sequence Length = 120869 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 33933 ccaccaccaccaccaacccc 33914
>ref|XM_781709.1| PREDICTED: Strongylocentrotus purpuratus similar to Down syndrome cell adhesion molecule (LOC581722), mRNA Length = 4032 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 ttgacgtagtcatcttcatc 222 |||||||||||||||||||| Sbjct: 3911 ttgacgtagtcatcttcatc 3892
>gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, complete sequence Length = 141449 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ccctccccagcaccatcctc 309 |||||||||||||||||||| Sbjct: 71720 ccctccccagcaccatcctc 71739
>gb|AC165148.2| Mus musculus BAC clone RP24-278K24 from chromosome 14, complete sequence Length = 197531 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 156647 ccaccaccaccaccaacccc 156666
>emb|BX294023.1|NCB20D17 Neurospora crassa DNA linkage group V BAC clone B20D17 Length = 71593 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 tccaccaccaccaccaaccc 518 |||||||||||||||||||| Sbjct: 23166 tccaccaccaccaccaaccc 23185
>emb|AL663033.10| Mouse DNA sequence from clone RP23-78H18 on chromosome 11 Contains the 5' end of a novel gene (2410004F01Rik), a novel gene, part of a novel gene (9630013K17Rik), a novel gene and a CpG island, complete sequence Length = 126191 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 58874 ccaccaccaccaccaacccc 58855
>gb|AC127071.3| Homo sapiens 12 BAC RP11-200K12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 63578 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 19613 ccaccaccaccaccaacccc 19594
>gb|AY120737.1| Arabidopsis thaliana MAP kinase ATMPK6 (At2g43790) mRNA, complete cds Length = 1598 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 atccaccaccaccaccaacc 517 |||||||||||||||||||| Sbjct: 70 atccaccaccaccaccaacc 89
>gb|DQ397875.1| Cenarchaeum symbiosum clone C07F02, complete sequence Length = 41724 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 agtttgcatcatactatgag 22 |||||||||||||||||||| Sbjct: 22781 agtttgcatcatactatgag 22762
>dbj|AK128812.1| Homo sapiens cDNA FLJ46034 fis, clone SPLEN2033996, highly similar to Homo sapiens pan-hematopoietic expression (PHEMX) Length = 3340 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ccctccccagcaccatcctc 309 |||||||||||||||||||| Sbjct: 1530 ccctccccagcaccatcctc 1511
>dbj|AK021915.1| Homo sapiens cDNA FLJ11853 fis, clone HEMBA1006758, highly similar to Homo sapiens protocadherin beta 13 (PCDH-beta13) mRNA Length = 2922 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ttcttgctggattcagcttc 197 |||||||||||||||||||| Sbjct: 186 ttcttgctggattcagcttc 167
>gb|AC024599.9| Homo sapiens chromosome 10 clone RP11-159H3, complete sequence Length = 173391 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 162552 ccaccaccaccaccaacccc 162571
>gb|AC002333.3| Arabidopsis thaliana chromosome 2 clone F18O19 map CIC10F02, complete sequence Length = 98734 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 atccaccaccaccaccaacc 517 |||||||||||||||||||| Sbjct: 35450 atccaccaccaccaccaacc 35431
>gb|AC119156.9| Mus musculus chromosome 1, clone RP24-534J20, complete sequence Length = 185873 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tccaccaccaccaccaaccc 518 |||||||||||||||||||| Sbjct: 185487 tccaccaccaccaccaaccc 185468
>gb|AC098567.4| Genomic sequence for Mus musculus, clone RP23-198E6, from chromosome 17, complete sequence Length = 185277 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 59792 ccaccaccaccaccaacccc 59811
>gb|AC123710.12| Mus musculus chromosome 5, clone RP23-378C15, complete sequence Length = 175744 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tcatggagaacaactccatg 157 |||||||||||||||||||| Sbjct: 25385 tcatggagaacaactccatg 25366
>gb|AC144407.2| Homo sapiens chromosome 8, clone XXfos-800816B5, complete sequence Length = 34904 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 14146 ccaccaccaccaccaacccc 14127
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 17735754 ccaccaccaccaccaacccc 17735735 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 10762195 ccaccaccaccaccaacccc 10762176
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tccaccaccaccaccaaccc 518 |||||||||||||||||||| Sbjct: 4150853 tccaccaccaccaccaaccc 4150834
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 18718646 ccaccaccaccaccaacccc 18718627
>gb|AC097452.2| Homo sapiens BAC clone RP11-1J7 from 4, complete sequence Length = 118322 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 atcttcatccttgctcaagt 233 |||||||||||||||||||| Sbjct: 32258 atcttcatccttgctcaagt 32277
>emb|BX842017.1|CNS09Y8M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS40ZG07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 456 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 atccaccaccaccaccaacc 517 |||||||||||||||||||| Sbjct: 70 atccaccaccaccaccaacc 89
>gb|AF323673.1|AF323673 Bacteriophage bIL312, complete genome Length = 15179 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 attgagcttttcagggggca 368 |||||||||||||||||||| Sbjct: 7929 attgagcttttcagggggca 7948
>ref|NM_001003121.1| Canis familiaris gonadotropin-releasing hormone receptor (GNRHR), mRNA Length = 984 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 gagtccagcacacagtacacgaag 43 ||||||||||||||||| |||||| Sbjct: 841 gagtccagcacacagtaaacgaag 818
>gb|AF533016.1| Salmo salar hyperosmotic glycine rich protein mRNA, complete cds Length = 963 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 tgtatccaccaccaccacca 514 |||||||||||||||||||| Sbjct: 478 tgtatccaccaccaccacca 459
>gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, complete sequence Length = 145042 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ccctccccagcaccatcctc 309 |||||||||||||||||||| Sbjct: 31093 ccctccccagcaccatcctc 31074
>gb|AC125499.3| Equus caballus clone CH241-369C8, complete sequence Length = 207304 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 aagcactacattattatctt 108 |||||||||||||||||||| Sbjct: 87046 aagcactacattattatctt 87027
>gb|AF206513.1|AF206513 Canis familiaris GnRH receptor mRNA, complete cds Length = 984 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 gagtccagcacacagtacacgaag 43 ||||||||||||||||| |||||| Sbjct: 841 gagtccagcacacagtaaacgaag 818
>gb|AC093127.3| Papio anubis clone RP41-335G18, complete sequence Length = 89944 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ccccctccccagcaccatcc 307 |||||||||||||||||||| Sbjct: 23429 ccccctccccagcaccatcc 23410
>dbj|D21842.1|ATHATMPK6 Arabidopsis thaliana mRNA for MAP kinase, complete cds Length = 1562 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 atccaccaccaccaccaacc 517 |||||||||||||||||||| Sbjct: 28 atccaccaccaccaccaacc 47
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tccaccaccaccaccaaccc 518 |||||||||||||||||||| Sbjct: 34475 tccaccaccaccaccaaccc 34456
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534H07 Length = 144689 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tccaccaccaccaccaaccc 518 |||||||||||||||||||| Sbjct: 143711 tccaccaccaccaccaaccc 143692
>gb|AC124615.11| Mus musculus chromosome 5, clone RP24-445F15, complete sequence Length = 128560 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 96929 ccaccaccaccaccaacccc 96910
>gb|AC006450.13|AC006450 Homo sapiens chromosome 9, clone RP11-85O21, complete sequence Length = 177555 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 tttgcaagcactacattatt 103 |||||||||||||||||||| Sbjct: 28151 tttgcaagcactacattatt 28170
>dbj|AK101529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033047I01, full insert sequence Length = 2235 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 178 ccaccaccaccaccaacccc 159
>dbj|AK099385.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074G02, full insert sequence Length = 2686 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 45 ccaccaccaccaccaacccc 64
>dbj|AK099062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153E21, full insert sequence Length = 3606 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tccaccaccaccaccaaccc 518 |||||||||||||||||||| Sbjct: 267 tccaccaccaccaccaaccc 248
>dbj|AK073151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033010C22, full insert sequence Length = 2704 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 42 ccaccaccaccaccaacccc 61
>gb|BC071934.1| Homo sapiens protocadherin beta 13, mRNA (cDNA clone MGC:88620 IMAGE:6383780), complete cds Length = 2771 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ttcttgctggattcagcttc 197 |||||||||||||||||||| Sbjct: 156 ttcttgctggattcagcttc 137
>dbj|AK065742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042D06, full insert sequence Length = 3606 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tccaccaccaccaccaaccc 518 |||||||||||||||||||| Sbjct: 267 tccaccaccaccaccaaccc 248
>gb|AC006600.4|AC006600 Homo sapiens chromosome 17, clone hRPK.502_F_1, complete sequence Length = 170453 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 tccaccaccaccaccaaccc 518 |||||||||||||||||||| Sbjct: 13526 tccaccaccaccaccaaccc 13545
>emb|AL157688.4|CNS01RG0 Human chromosome 14 DNA sequence BAC R-594C13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 189918 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 accaccaccaccaacccctg 521 |||||||||||||||||||| Sbjct: 92448 accaccaccaccaacccctg 92467
>gb|AC134462.5| Mus musculus BAC clone RP23-391L12 from chromosome 12, complete sequence Length = 197870 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 10416 ccaccaccaccaccaacccc 10435
>gb|AC005752.1|AC005752 Homo sapiens chromosome 5, BAC clone 182a8 (LBNL H161), complete sequence Length = 101072 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ttcttgctggattcagcttc 197 |||||||||||||||||||| Sbjct: 75678 ttcttgctggattcagcttc 75697
>emb|BX000474.13| Mouse DNA sequence from clone RP24-80C21 on chromosome 2, complete sequence Length = 205184 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 115761 ccaccaccaccaccaacccc 115780
>emb|AL606841.13| Mouse DNA sequence from clone RP23-466K24 on chromosome 2, complete sequence Length = 150309 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 19819 ccaccaccaccaccaacccc 19800
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 17690125 ccaccaccaccaccaacccc 17690106 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 10761894 ccaccaccaccaccaacccc 10761875
>emb|AL831795.4|CNS08CA8 Oryza sativa chromosome 12, . BAC OSJNBb0085N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135105 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 127044 ccaccaccaccaccaacccc 127025
>emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0073H17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113494 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 45599 ccaccaccaccaccaacccc 45618
>emb|AL731876.3|CNS08C8G Oryza sativa chromosome 12, . BAC OJ1194_E11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 119388 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 28544 ccaccaccaccaccaacccc 28525
>emb|CT030233.6| Mouse DNA sequence from clone RP24-103C16 on chromosome 14, complete sequence Length = 216332 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 108892 ccaccaccaccaccaacccc 108873
>gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, complete sequence Length = 140977 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ccctccccagcaccatcctc 309 |||||||||||||||||||| Sbjct: 69250 ccctccccagcaccatcctc 69231
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 aagcactacattattatctt 108 |||||||||||||||||||| Sbjct: 377529 aagcactacattattatctt 377510
>gb|AC166358.5| Mus musculus BAC clone RP23-338N2 from chromosome 12, complete sequence Length = 226310 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 108820 ccaccaccaccaccaacccc 108839
>dbj|AB028021.1| Homo sapiens HNF-3beta mRNA for hepatocyte nuclear factor-3 beta, complete cds Length = 1944 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 ccaccaccaccaccaacccc 519 |||||||||||||||||||| Sbjct: 1369 ccaccaccaccaccaacccc 1388 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,734,152 Number of Sequences: 3902068 Number of extensions: 5734152 Number of successful extensions: 286414 Number of sequences better than 10.0: 111 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 285232 Number of HSP's gapped (non-prelim): 1182 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)