ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24l23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 86 2e-17
2LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC... 71 9e-13
3LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12) 35 0.075
4LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12) 33 0.22
5LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC... 33 0.22
6LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13... 30 1.9
7LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1... 29 3.2
8LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precur... 29 3.2
9LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 28 5.4
10LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12) 28 5.4
11LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12) 28 7.0

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
            (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 42/49 (85%), Positives = 42/49 (85%), Gaps = 5/49 (10%)
 Frame = -3

Query: 132  EQVDEWNNDXDRKNXHGAGMVPYVLLRPS-----DGDPTDEKMVMEMGI 1
            EQVDEWNND DRKN HGAGMVPYVLLRPS     DGDPTDEKMVMEMGI
Sbjct: 882  EQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGI 930



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>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)|
            (LOX2:Hv:2)
          Length = 932

 Score = 70.9 bits (172), Expect = 9e-13
 Identities = 31/44 (70%), Positives = 36/44 (81%)
 Frame = -3

Query: 132  EQVDEWNNDXDRKNXHGAGMVPYVLLRPSDGDPTDEKMVMEMGI 1
            EQV+EWN D  R+N HGAG+VPYVLLRP +G+P D K VMEMGI
Sbjct: 883  EQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGI 926



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>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)|
          Length = 899

 Score = 34.7 bits (78), Expect = 0.075
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 132 EQVDEWNNDXDRKNXHGAGMVPYVLLRPSDG 40
           E+++  N D  R+N  GAG++PY L+ PS G
Sbjct: 855 EEIERRNADPSRRNRCGAGVLPYELMAPSSG 885



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>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)|
          Length = 918

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -3

Query: 132 EQVDEWNNDXDRKNXHGAGMVPYVLLRPS 46
           E ++  N D  RKN  GAG++PY LL PS
Sbjct: 874 ETIERRNADHGRKNRCGAGVLPYELLAPS 902



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>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:3)
          Length = 896

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 126 VDEWNNDXDRKNXHGAGMVPYVLLRP 49
           +D  NN+ + KN  GAG+VPY LL+P
Sbjct: 854 IDMRNNNPENKNRCGAGIVPYELLKP 879



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>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)|
          Length = 896

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -3

Query: 126 VDEWNNDXDRKNXHGAGMVPYVLLRPSDGDPTDEKMVMEMGI 1
           +DE N +   KN  GAG+V Y LL+     PT E  V  MG+
Sbjct: 854 IDERNVNITLKNRAGAGVVKYELLK-----PTSEHGVTGMGV 890



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>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)|
          Length = 924

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 126 VDEWNNDXDRKNXHGAGMVPYVLLRP 49
           +D  N D   KN  GAG++PY L++P
Sbjct: 882 IDGRNKDRKLKNRCGAGILPYQLMKP 907



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>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC|
           1.13.11.12)
          Length = 941

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 126 VDEWNNDXDRKNXHGAGMVPYVLLRP 49
           +D  N D   KN  GAG++PY L++P
Sbjct: 899 IDGRNKDRKLKNRCGAGILPYQLMKP 924



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 132 EQVDEWNNDXDRKNXHGAGMVPYVLLRPS 46
           E++ + NND   +N +G   +PY LL PS
Sbjct: 822 EKLTQRNNDESLRNRYGPVKMPYTLLYPS 850



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>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 132 EQVDEWNNDXDRKNXHGAGMVPYVLLRPS 46
           +++ + NND   +N HG   +PY LL PS
Sbjct: 817 KKLTQRNNDEKLRNRHGPVEMPYTLLYPS 845



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>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 859

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 132 EQVDEWNNDXDRKNXHGAGMVPYVLLRPS 46
           + +DE N+D   KN  G   +PY LL PS
Sbjct: 815 KNIDERNDDETLKNRTGLVKMPYTLLFPS 843


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,186,559
Number of Sequences: 219361
Number of extensions: 239071
Number of successful extensions: 533
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 80,573,946
effective HSP length: 20
effective length of database: 76,186,726
effective search space used: 1828481424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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