ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24l23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible l... 202 2e-49
2emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2... 76 3e-11
3ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.10
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.10
5dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.10
6dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.10
7dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.10
8emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2... 42 0.40
9dbj|AP001743.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 0.40
10dbj|AP001614.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 42 0.40
11ref|XM_524799.1| PREDICTED: Pan troglodytes similar to potassium... 40 1.6
12ref|NM_005549.2| Homo sapiens potassium voltage-gated channel, s... 40 1.6
13gb|BC074990.2| Homo sapiens potassium voltage-gated channel, sha... 40 1.6
14gb|AC132405.3| Mus musculus BAC clone RP23-332I1 from chromosome... 40 1.6
15ref|XM_582224.2| PREDICTED: Bos taurus similar to potassium volt... 40 1.6
16ref|XM_983966.1| PREDICTED: Mus musculus potassium voltage-gated... 40 1.6
17ref|XM_143471.4| PREDICTED: Mus musculus potassium voltage-gated... 40 1.6
18ref|XM_547232.2| PREDICTED: Canis familiaris similar to potassiu... 40 1.6
19ref|XM_946728.1| Theileria annulata strain Ankara hypothetical p... 40 1.6
20emb|AL358215.16| Human DNA sequence from clone RP11-470L19 on ch... 40 1.6
21gb|BC069165.1| Homo sapiens cDNA clone IMAGE:7216995 40 1.6
22gb|AC010012.5| Drosophila melanogaster 3L BAC RP98-22J16 (Roswel... 40 1.6
23dbj|AK157965.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 40 1.6
24ref|XM_227577.3| PREDICTED: Rattus norvegicus potassium voltage-... 40 1.6
25gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 ... 40 1.6
26gb|U96110.1|HSU96110 Homo sapiens cyclic GMP gated potassium cha... 40 1.6
27gb|U38182.1|OCU38182 Oryctolagus cuniculus cGMP-gated potassium ... 40 1.6
28ref|XM_954880.1| Neurospora crassa OR74A hypothetical protein (N... 38 6.3
29ref|XM_325965.1| Neurospora crassa OR74A hypothetical protein (N... 38 6.3
30gb|AC116503.17| Mus musculus chromosome 9, clone RP24-302M3, com... 38 6.3
31gb|AC126668.3| Mus musculus BAC clone RP24-370N20 from chromosom... 38 6.3
32emb|AJ400821.1|CRU400821 Capsella rubella ORF1, ORF2, ORF3, ORF4... 38 6.3
33emb|AL662810.16| Mouse DNA sequence from clone RP23-42P24 on chr... 38 6.3
34gb|AC131664.3| Mus musculus BAC clone RP23-274J16 from chromosom... 38 6.3
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.3
36dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 38 6.3
37ref|XM_310233.2| Anopheles gambiae str. PEST ENSANGP00000024377 ... 38 6.3
38dbj|AP003555.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 6.3
39gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.3
40emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 38 6.3
41emb|CT025670.8| Mouse DNA sequence from clone RP24-384G18 on chr... 38 6.3
42gb|AC087782.34| Mus musculus strain C57BL/6J chromosome 16 clone... 38 6.3
43gb|M60171.1|MZETUBA Zea mays alpha-3-tubulin gene, complete cds 38 6.3 
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA,
            complete cds
          Length = 3054

 Score =  202 bits (102), Expect = 2e-49
 Identities = 106/108 (98%)
 Strand = Plus / Minus

                                                                        
Query: 27   cgtccgtgggatcaccgtccgacggcctgagcagcacatacggcaccatgccggcgccgt 86
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2854 cgtccgtgggatcaccgtccgacggcctgagcagcacatacggcaccatgccggcgccgt 2795

                                                            
Query: 87   gtnggtttttccggtcggngtcgttgttccactcatccacctgctcca 134
            || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2794 gtcggtttttccggtcggggtcgttgttccactcatccacctgctcca 2747



 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 47/47 (100%)
 Strand = Plus / Minus

                                                           
Query: 1    gatgcccatctccatcaccatcttctcgtccgtgggatcaccgtccg 47
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2895 gatgcccatctccatcaccatcttctcgtccgtgggatcaccgtccg 2849
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>emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:2 gene)
          Length = 3023

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 108/132 (81%)
 Strand = Plus / Minus

                                                                        
Query: 2    atgcccatctccatcaccatcttctcgtccgtgggatcaccgtccgacggcctgagcagc 61
            |||||||||||||||||| | ||  ||||| | |||| ||||| | | ||||||||||||
Sbjct: 2872 atgcccatctccatcaccgttttagcgtccatcggattaccgttcaatggcctgagcagc 2813

                                                                        
Query: 62   acatacggcaccatgccggcgccgtgtnggtttttccggtcggngtcgttgttccactca 121
            || |||||||| | |||||| |||||  ||||| |||||  |  ||| ||||||||||| 
Sbjct: 2812 acgtacggcactacgccggcaccgtggcggtttctccggctgtcgtccttgttccactct 2753

                        
Query: 122  tccacctgctcc 133
            || |||||||||
Sbjct: 2752 tcgacctgctcc 2741
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>ref|XM_464447.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3123

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 48   acggcctgagcagcacatacggcaccatgccggcgccg 85
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 2828 acggcttgagcagctcgtacggcacgatgccggcgccg 2791
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 48      acggcctgagcagcacatacggcaccatgccggcgccg 85
               ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 5277016 acggcttgagcagctcgtacggcacgatgccggcgccg 5277053
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>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1225_F07
          Length = 142772

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 48   acggcctgagcagcacatacggcaccatgccggcgccg 85
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 3319 acggcttgagcagctcgtacggcacgatgccggcgccg 3356
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>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full
            insert sequence
          Length = 3160

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 48   acggcctgagcagcacatacggcaccatgccggcgccg 85
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 2827 acggcttgagcagctcgtacggcacgatgccggcgccg 2790
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>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full
            insert sequence
          Length = 2250

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 48   acggcctgagcagcacatacggcaccatgccggcgccg 85
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 1989 acggcttgagcagctcgtacggcacgatgccggcgccg 1952
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>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene)
          Length = 2967

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 48   acggcctgagcagcacatacggcaccatgccggcgcc 84
            ||||| |||||||| | |||||||| |||||||||||
Sbjct: 2721 acggcttgagcagctcgtacggcacgatgccggcgcc 2685
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>dbj|AP001743.1| Homo sapiens genomic DNA, chromosome 21q, section 87/105
          Length = 219256

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 114   tccactcatccacctgctcca 134
             |||||||||||||||||||||
Sbjct: 49785 tccactcatccacctgctcca 49805
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>dbj|AP001614.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2042A8, MX1-D21S171
             region, complete sequence
          Length = 81896

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 114   tccactcatccacctgctcca 134
             |||||||||||||||||||||
Sbjct: 34126 tccactcatccacctgctcca 34146
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>ref|XM_524799.1| PREDICTED: Pan troglodytes similar to potassium voltage-gated
           channel, shaker-related subfamily, member 10; cyclic GMP
           gated potassium channel (LOC469414), mRNA
          Length = 1671

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   catctccatcaccatcttct 26
           ||||||||||||||||||||
Sbjct: 681 catctccatcaccatcttct 700
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>ref|NM_005549.2| Homo sapiens potassium voltage-gated channel, shaker-related
            subfamily, member 10 (KCNA10), mRNA
          Length = 1959

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    catctccatcaccatcttct 26
            ||||||||||||||||||||
Sbjct: 1069 catctccatcaccatcttct 1088
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>gb|BC074990.2| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 10, mRNA (cDNA clone MGC:103916
           IMAGE:30915306), complete cds
          Length = 1599

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   catctccatcaccatcttct 26
           ||||||||||||||||||||
Sbjct: 711 catctccatcaccatcttct 730
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>gb|AC132405.3| Mus musculus BAC clone RP23-332I1 from chromosome 3, complete sequence
          Length = 207726

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      catctccatcaccatcttct 26
              ||||||||||||||||||||
Sbjct: 187186 catctccatcaccatcttct 187167
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>ref|XM_582224.2| PREDICTED: Bos taurus similar to potassium voltage-gated channel,
           shaker-related subfamily, member 10 (LOC538721), mRNA
          Length = 1643

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   catctccatcaccatcttct 26
           ||||||||||||||||||||
Sbjct: 762 catctccatcaccatcttct 781
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>ref|XM_983966.1| PREDICTED: Mus musculus potassium voltage-gated channel,
           shaker-related subfamily, member 10 (Kcna10), mRNA
          Length = 1826

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   catctccatcaccatcttct 26
           ||||||||||||||||||||
Sbjct: 840 catctccatcaccatcttct 859
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>ref|XM_143471.4| PREDICTED: Mus musculus potassium voltage-gated channel,
           shaker-related subfamily, member 10 (Kcna10), mRNA
          Length = 1826

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   catctccatcaccatcttct 26
           ||||||||||||||||||||
Sbjct: 840 catctccatcaccatcttct 859
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>ref|XM_547232.2| PREDICTED: Canis familiaris similar to potassium voltage-gated
           channel, shaker-related subfamily, member 10
           (LOC490111), mRNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   catctccatcaccatcttct 26
           ||||||||||||||||||||
Sbjct: 795 catctccatcaccatcttct 814
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>ref|XM_946728.1| Theileria annulata strain Ankara hypothetical protein (TA15705)
          partial mRNA
          Length = 1008

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 6  ccatctccatcaccatcttc 25
          ||||||||||||||||||||
Sbjct: 95 ccatctccatcaccatcttc 76
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>emb|AL358215.16| Human DNA sequence from clone RP11-470L19 on chromosome 1 Contains the
             3' end of the PROK1 gene for Prokineticin 1, a putatative
             novel transcript, an unprocessed pseudogene, a novel
             transcript and the LOC395116 gene for the shaker subfamily
             potassium channel KCNA10, complete sequence
          Length = 101529

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     catctccatcaccatcttct 26
             ||||||||||||||||||||
Sbjct: 64506 catctccatcaccatcttct 64487
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>gb|BC069165.1| Homo sapiens cDNA clone IMAGE:7216995
          Length = 1959

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   catctccatcaccatcttct 26
           ||||||||||||||||||||
Sbjct: 891 catctccatcaccatcttct 872
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>gb|AC010012.5| Drosophila melanogaster 3L BAC RP98-22J16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 170466

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     ccatctccatcaccatcttc 25
             ||||||||||||||||||||
Sbjct: 69693 ccatctccatcaccatcttc 69712
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>dbj|AK157965.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
           library, clone:F930012I12 product:Cyclic GMP gated
           potassium channel homolog [Homo sapiens], full insert
           sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   catctccatcaccatcttct 26
           ||||||||||||||||||||
Sbjct: 841 catctccatcaccatcttct 860
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>ref|XM_227577.3| PREDICTED: Rattus norvegicus potassium voltage-gated channel,
           shaker-related subfamily, member 10 (predicted)
           (Kcna10_predicted), mRNA
          Length = 1603

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   catctccatcaccatcttct 26
           ||||||||||||||||||||
Sbjct: 710 catctccatcaccatcttct 729
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>gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 of 83 of the complete
              sequence
          Length = 312072

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      ccatctccatcaccatcttc 25
              ||||||||||||||||||||
Sbjct: 127765 ccatctccatcaccatcttc 127784
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>gb|U96110.1|HSU96110 Homo sapiens cyclic GMP gated potassium channel (Kcn1) gene,
           complete cds
          Length = 1580

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   catctccatcaccatcttct 26
           ||||||||||||||||||||
Sbjct: 690 catctccatcaccatcttct 709
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>gb|U38182.1|OCU38182 Oryctolagus cuniculus cGMP-gated potassium channel (Kcn1) mRNA,
            complete cds
          Length = 2178

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    catctccatcaccatcttct 26
            ||||||||||||||||||||
Sbjct: 1320 catctccatcaccatcttct 1339
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>ref|XM_954880.1| Neurospora crassa OR74A hypothetical protein (NCU06111.1) partial
           mRNA
          Length = 954

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 5   cccatctccatcaccatct 23
           |||||||||||||||||||
Sbjct: 124 cccatctccatcaccatct 142
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>ref|XM_325965.1| Neurospora crassa OR74A hypothetical protein (NCU06111.1) partial
           mRNA
          Length = 954

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 5   cccatctccatcaccatct 23
           |||||||||||||||||||
Sbjct: 124 cccatctccatcaccatct 142
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>gb|AC116503.17| Mus musculus chromosome 9, clone RP24-302M3, complete sequence
          Length = 199065

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     tctccatcaccatcttctc 27
             |||||||||||||||||||
Sbjct: 92219 tctccatcaccatcttctc 92237
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>gb|AC126668.3| Mus musculus BAC clone RP24-370N20 from chromosome 7, complete sequence
          Length = 179246

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     cccatctccatcaccatct 23
             |||||||||||||||||||
Sbjct: 64839 cccatctccatcaccatct 64857
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>emb|AJ400821.1|CRU400821 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial)
          Length = 26241

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 12   ccatcaccatcttctcgtc 30
            |||||||||||||||||||
Sbjct: 7296 ccatcaccatcttctcgtc 7314



 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 12   ccatcaccatcttctcgtc 30
            |||||||||||||||||||
Sbjct: 3506 ccatcaccatcttctcgtc 3524
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>emb|AL662810.16| Mouse DNA sequence from clone RP23-42P24 on chromosome 11 Contains a
              novel gene (9630006B20Rik), a novel gene, a ribosomal
              protein S12 (Rps12) pseudogene, a novel gene (LOC268391),
              the Bcl11a gene for B-cell CLL/lymphoma 11A (zinc finger
              protein), two novel genes and three CpG islands, complete
              sequence
          Length = 267641

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      ccatctccatcaccatctt 24
              |||||||||||||||||||
Sbjct: 219557 ccatctccatcaccatctt 219575
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>gb|AC131664.3| Mus musculus BAC clone RP23-274J16 from chromosome 5, complete sequence
          Length = 189996

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      catctccatcaccatcttc 25
              |||||||||||||||||||
Sbjct: 143683 catctccatcaccatcttc 143665
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 1        gatgcccatctccatcacc 19
                |||||||||||||||||||
Sbjct: 22970439 gatgcccatctccatcacc 22970421
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 15      tcaccatcttctcgtccgt 33
               |||||||||||||||||||
Sbjct: 3155121 tcaccatcttctcgtccgt 3155103
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>ref|XM_310233.2| Anopheles gambiae str. PEST ENSANGP00000024377
           (ENSANGG00000020805), partial mRNA
          Length = 654

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 3   tgcccatctccatcaccat 21
           |||||||||||||||||||
Sbjct: 307 tgcccatctccatcaccat 289
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>dbj|AP003555.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-626H12, complete
              sequence
          Length = 121600

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 114    tccactcatccacctgctc 132
              |||||||||||||||||||
Sbjct: 115898 tccactcatccacctgctc 115880
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 1        gatgcccatctccatcacc 19
                |||||||||||||||||||
Sbjct: 22898630 gatgcccatctccatcacc 22898612
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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155568

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     gatgcccatctccatcacc 19
             |||||||||||||||||||
Sbjct: 79716 gatgcccatctccatcacc 79698
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>emb|CT025670.8| Mouse DNA sequence from clone RP24-384G18 on chromosome 17, complete
             sequence
          Length = 199300

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     gcccatctccatcaccatc 22
             |||||||||||||||||||
Sbjct: 17278 gcccatctccatcaccatc 17260
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>gb|AC087782.34| Mus musculus strain C57BL/6J chromosome 16 clone rp23-81d13, complete
              sequence
          Length = 177250

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 6      ccatctccatcaccatctt 24
              |||||||||||||||||||
Sbjct: 119718 ccatctccatcaccatctt 119700
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>gb|M60171.1|MZETUBA Zea mays alpha-3-tubulin gene, complete cds
          Length = 4397

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 7    catctccatcaccatcttc 25
            |||||||||||||||||||
Sbjct: 1303 catctccatcaccatcttc 1321


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 806,481
Number of Sequences: 3902068
Number of extensions: 806481
Number of successful extensions: 62014
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61831
Number of HSP's gapped (non-prelim): 183
length of query: 134
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 113
effective length of database: 17,151,101,840
effective search space: 1938074507920
effective search space used: 1938074507920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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