>MRAW_CLOTE (Q894B4) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 310

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 512 LIRRGVPRLLRQQGPHPAXRAVQ 444
           +I+R +P   R++GPHPA R  Q
Sbjct: 185 IIKRAIPAKFRREGPHPAKRTFQ 207

>MRAW_CLOAB (Q97H81) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 312

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 512 LIRRGVPRLLRQQGPHPAXRAVQ 444
           +I+  +P   R+QGPHPA R  Q
Sbjct: 185 IIKAAIPAKFRRQGPHPAKRTFQ 207

>ZN394_PONPY (Q5R741) Zinc finger protein 394|
          Length = 574

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 37  SKAKHHYVXRAGMTCIIKRQTNT*RHSGGHARAHPGNCMKTCTTTRAWMDLFSHRR 204
           S+ KH      G TC   R +N  RH   H    P  C +   + +   DLF H R
Sbjct: 437 SRDKHFKCEECGETC---RISNLFRHQRLHKGERPYKCEECKKSFKQRSDLFKHHR 489

>CHD3_HUMAN (Q12873) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD3) (CHD-3) (Mi-2 autoantigen
            240 kDa protein) (Mi2-alpha) (Zinc-finger helicase)
            (hZFH)
          Length = 2000

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 492  TPSSAARSTPCXTRCATPGPTATG 421
            TP ++A ++PC ++ ATP P+  G
Sbjct: 1541 TPEASATNSPCTSKPATPAPSEKG 1564


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,763,333
Number of Sequences: 219361
Number of extensions: 755230
Number of successful extensions: 2143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2132
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)