ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25a20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009224.1| Triticum aestivum clone wle1n.pk0076.h7:fis, full... 585 e-164
2gb|AY105436.1| Zea mays PCO078991 mRNA sequence 186 5e-44
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
4dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
5dbj|AK121675.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
6dbj|AK104528.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
7dbj|AK104638.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
8dbj|AK060896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
9gb|AY112525.1| Zea mays CL98_-1 mRNA sequence 78 3e-11
10gb|AE005733.1| Caulobacter crescentus CB15 section 59 of 359 of ... 42 1.8
11gb|AC165317.8| Mus musculus chromosome 5, clone RP23-265O20, com... 40 6.9
12gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
13gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 6.9
14gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 6.9
15gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 6.9
16ref|XM_761265.1| Theileria parva strain Muguga chromosome 1 hypo... 40 6.9
17gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 6.9
18ref|XM_970122.1| PREDICTED: Tribolium castaneum similar to CG331... 40 6.9
19emb|X84374.3|SCARD1GN Saccharothrix mutabilis subsp. capreolus A... 40 6.9
20gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 6.9
21emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 6.9
22gb|DQ397635.1| Cenarchaeum symbiosum clone C05H05, complete sequ... 40 6.9
23dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.9
24gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.9
25dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
26gb|AF204401.1|AF204401 Streptomyces chrysomallus actinomycin syn... 40 6.9
27gb|AE004681.1| Pseudomonas aeruginosa PAO1, section 242 of 529 o... 40 6.9
28dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.9
29dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 6.9
30dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, c... 40 6.9
31dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
32dbj|AP006482.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
33emb|AJ242827.1|STE242827 Streptomyces tendae afp gene and ORF2 (... 40 6.9
34gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene... 40 6.9
35gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, co... 40 6.9
36dbj|AB014898.1| Mycoplana bullata gyrB gene for DNA gyrase subun... 40 6.9
37dbj|D37875.1|RERAMOA Nocardia corallina gene cluster for alkene ... 40 6.9 
>gb|BT009224.1| Triticum aestivum clone wle1n.pk0076.h7:fis, full insert mRNA
            sequence
          Length = 1874

 Score =  585 bits (295), Expect = e-164
 Identities = 470/523 (89%), Gaps = 30/523 (5%)
 Strand = Plus / Minus

                                                                        
Query: 1    aaattattcttacatncaccagcgaggntaagnaaa---agcaaagca--aagcatcact 55
            ||||||||||||||| ||||| ||| | |||| |||   |||||||||  ||||||||||
Sbjct: 1829 aaattattcttacat-caccaacgaagataagaaaagcaagcaaagcattaagcatcact 1771

                                                                        
Query: 56   acgtagn-acgagccggcatgacatgcatcatcaagcggcaaacaaacacataaaggcat 114
            |||||   | ||| ||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct: 1770 acgtatatatgagacggcatggcatgcatcatcaaacggcaagcaaacacataaaggcat 1711

                                                                        
Query: 115  agcggaggacacgcgcgcgcgcatccggggaactgcatgaaaacatgcacgacgacacgt 174
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||
Sbjct: 1710 agcggaggacacgcgcgcgcgcatccgggaaactgcatgaaaacatgcacgac---acgt 1654

                                                                        
Query: 175  gcatggat----ggacttatttagccaccgacgatcgagacgactaccagctggg----c 226
            ||||| ||    |||||||||||||||||         |||||| ||||||||||    |
Sbjct: 1653 gcatgcatatatggacttatttagccacc---------gacgaccaccagctggggcggc 1603

                                                                        
Query: 227  cggccggtaagcctagcct--tagtagtggcaggcgtagttggccttcttcaacatggcg 284
            ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 1602 cggccggta-gcctagcctcctagtagtggcaggcgtagttggccttcttcaacatggcg 1544

                                                                        
Query: 285  gcctgtgcggcggcggcgatctcggaggtgagcccgacggcgacgcactccttgacctgg 344
            ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 gcctgcgcggcggcggcgaactcggaggtgagcccgacggcgacgcactccttgacctgg 1484

                                                                        
Query: 345  taggcggtgtaggcgaacttctccttcttggcggcgatggcgttgatgtaggcggcggcg 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1483 taggcggtgtaggcgaacttctccttcttggcggcgatggcgttgatgtaggcggcggcg 1424

                                                                        
Query: 405  ccctcgcgcagcaggtccccgtagcagtcggtccgggtgttgcacagcgcgtnttgcagg 464
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 1423 ccctcgcgcagcaggtcgccgtagcagtcggtccgggtgttgcacagcgcgtcctgcagg 1364

                                                       
Query: 465  gtgtggaccttgctgccgaagaaggcgtggcacacctcgccga 507
            || |||| ||||||||||||||||| |||||||||||| ||||
Sbjct: 1363 gtatggatcttgctgccgaagaaggagtggcacacctctccga 1321
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>gb|AY105436.1| Zea mays PCO078991 mRNA sequence
          Length = 938

 Score =  186 bits (94), Expect = 5e-44
 Identities = 218/260 (83%), Gaps = 6/260 (2%)
 Strand = Plus / Minus

                                                                       
Query: 254 gcaggcgtagttggccttcttcaacatggcggcctgtgcggcggcggcgatctcggaggt 313
           ||||||||||||||||||||| |||||||||||||| ||| ||||||||  || ||| ||
Sbjct: 675 gcaggcgtagttggccttcttgaacatggcggcctgcgcgacggcggcggccttggaagt 616

                                                                       
Query: 314 gagcccgacggcgacgcactccttgacctggtaggcggtgtaggcgaacttctccttctt 373
           |||| ||||||||| ||| ||||  ||||| |  | | |||||||| |||||||      
Sbjct: 615 gagcgcgacggcgatgcagtcctgaacctgctgcgtgctgtaggcgtacttctc------ 562

                                                                       
Query: 374 ggcggcgatggcgttgatgtaggcggcggcgccctcgcgcagcaggtccccgtagcagtc 433
           ||||||||||| ||||| |||||| |||||||||||||| || ||||| |||||||||||
Sbjct: 561 ggcggcgatggagttgaggtaggccgcggcgccctcgcggaggaggtcgccgtagcagtc 502

                                                                       
Query: 434 ggtccgggtgttgcacagcgcgtnttgcagggtgtggaccttgctgccgaagaaggcgtg 493
           ||| |||||||||||||||||||  ||||| || || | |||||| ||||||||||||  
Sbjct: 501 ggtgcgggtgttgcacagcgcgtcctgcagcgtctgcagcttgctcccgaagaaggcgct 442

                               
Query: 494 gcacacctcgccgaatgagc 513
           |||||| |||||||| ||||
Sbjct: 441 gcacacgtcgccgaaggagc 422
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  125 bits (63), Expect = 2e-25
 Identities = 199/244 (81%), Gaps = 3/244 (1%)
 Strand = Plus / Plus

                                                                            
Query: 248      gtagtggcaggcgtagttggccttcttcaacatggcggcctgtgcggcggcggcgatctc 307
                |||||||||||||  |||||||||||| |||| |||||||||  ||  |||||||  || 
Sbjct: 20659304 gtagtggcaggcgaggttggccttcttgaacaaggcggcctgctcgatggcggcggcctt 20659363

                                                                            
Query: 308      ggaggtgagcccgacggcgacgcactccttgacctggtaggcggtgtaggcgaactt--- 364
                ||||||||| |||| |  || |||   ||||||||| |  | |||||||||||||||   
Sbjct: 20659364 ggaggtgaggccgaggaggatgcaggacttgacctgctgcgtggtgtaggcgaacttggc 20659423

                                                                            
Query: 365      ctccttcttggcggcgatggcgttgatgtaggcggcggcgccctcgcgcagcaggtcccc 424
                || |||||||||||| | || ||||||||| |||||||||||||| || |||||||| ||
Sbjct: 20659424 ctgcttcttggcggccacggagttgatgtacgcggcggcgccctcccggagcaggtcgcc 20659483

                                                                            
Query: 425      gtagcagtcggtccgggtgttgcacagcgcgtnttgcagggtgtggaccttgctgccgaa 484
                |||||||||  | |||||| ||||||||||||  ||||| || || | |||||| |||||
Sbjct: 20659484 gtagcagtccttgcgggtgctgcacagcgcgtcctgcagcgtctgcagcttgctcccgaa 20659543

                    
Query: 485      gaag 488
                ||||
Sbjct: 20659544 gaag 20659547
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>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0427B07
          Length = 172058

 Score =  125 bits (63), Expect = 2e-25
 Identities = 199/244 (81%), Gaps = 3/244 (1%)
 Strand = Plus / Plus

                                                                         
Query: 248   gtagtggcaggcgtagttggccttcttcaacatggcggcctgtgcggcggcggcgatctc 307
             |||||||||||||  |||||||||||| |||| |||||||||  ||  |||||||  || 
Sbjct: 81711 gtagtggcaggcgaggttggccttcttgaacaaggcggcctgctcgatggcggcggcctt 81770

                                                                         
Query: 308   ggaggtgagcccgacggcgacgcactccttgacctggtaggcggtgtaggcgaactt--- 364
             ||||||||| |||| |  || |||   ||||||||| |  | |||||||||||||||   
Sbjct: 81771 ggaggtgaggccgaggaggatgcaggacttgacctgctgcgtggtgtaggcgaacttggc 81830

                                                                         
Query: 365   ctccttcttggcggcgatggcgttgatgtaggcggcggcgccctcgcgcagcaggtcccc 424
             || |||||||||||| | || ||||||||| |||||||||||||| || |||||||| ||
Sbjct: 81831 ctgcttcttggcggccacggagttgatgtacgcggcggcgccctcccggagcaggtcgcc 81890

                                                                         
Query: 425   gtagcagtcggtccgggtgttgcacagcgcgtnttgcagggtgtggaccttgctgccgaa 484
             |||||||||  | |||||| ||||||||||||  ||||| || || | |||||| |||||
Sbjct: 81891 gtagcagtccttgcgggtgctgcacagcgcgtcctgcagcgtctgcagcttgctcccgaa 81950

                 
Query: 485   gaag 488
             ||||
Sbjct: 81951 gaag 81954
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>dbj|AK121675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068F09, full
           insert sequence
          Length = 957

 Score =  125 bits (63), Expect = 2e-25
 Identities = 199/244 (81%), Gaps = 3/244 (1%)
 Strand = Plus / Minus

                                                                       
Query: 248 gtagtggcaggcgtagttggccttcttcaacatggcggcctgtgcggcggcggcgatctc 307
           |||||||||||||  |||||||||||| |||| |||||||||  ||  |||||||  || 
Sbjct: 620 gtagtggcaggcgaggttggccttcttgaacaaggcggcctgctcgatggcggcggcctt 561

                                                                       
Query: 308 ggaggtgagcccgacggcgacgcactccttgacctggtaggcggtgtaggcgaactt--- 364
           ||||||||| |||| |  || |||   ||||||||| |  | |||||||||||||||   
Sbjct: 560 ggaggtgaggccgaggaggatgcaggacttgacctgctgcgtggtgtaggcgaacttggc 501

                                                                       
Query: 365 ctccttcttggcggcgatggcgttgatgtaggcggcggcgccctcgcgcagcaggtcccc 424
           || |||||||||||| | || ||||||||| |||||||||||||| || |||||||| ||
Sbjct: 500 ctgcttcttggcggccacggagttgatgtacgcggcggcgccctcccggagcaggtcgcc 441

                                                                       
Query: 425 gtagcagtcggtccgggtgttgcacagcgcgtnttgcagggtgtggaccttgctgccgaa 484
           |||||||||  | |||||| ||||||||||||  ||||| || || | |||||| |||||
Sbjct: 440 gtagcagtccttgcgggtgctgcacagcgcgtcctgcagcgtctgcagcttgctcccgaa 381

               
Query: 485 gaag 488
           ||||
Sbjct: 380 gaag 377
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>dbj|AK104528.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A03, full
           insert sequence
          Length = 977

 Score =  125 bits (63), Expect = 2e-25
 Identities = 199/244 (81%), Gaps = 3/244 (1%)
 Strand = Plus / Minus

                                                                       
Query: 248 gtagtggcaggcgtagttggccttcttcaacatggcggcctgtgcggcggcggcgatctc 307
           |||||||||||||  |||||||||||| |||| |||||||||  ||  |||||||  || 
Sbjct: 619 gtagtggcaggcgaggttggccttcttgaacaaggcggcctgctcgatggcggcggcctt 560

                                                                       
Query: 308 ggaggtgagcccgacggcgacgcactccttgacctggtaggcggtgtaggcgaactt--- 364
           ||||||||| |||| |  || |||   ||||||||| |  | |||||||||||||||   
Sbjct: 559 ggaggtgaggccgaggaggatgcaggacttgacctgctgcgtggtgtaggcgaacttggc 500

                                                                       
Query: 365 ctccttcttggcggcgatggcgttgatgtaggcggcggcgccctcgcgcagcaggtcccc 424
           || |||||||||||| | || ||||||||| |||||||||||||| || |||||||| ||
Sbjct: 499 ctgcttcttggcggccacggagttgatgtacgcggcggcgccctcccggagcaggtcgcc 440

                                                                       
Query: 425 gtagcagtcggtccgggtgttgcacagcgcgtnttgcagggtgtggaccttgctgccgaa 484
           |||||||||  | |||||| ||||||||||||  ||||| || || | |||||| |||||
Sbjct: 439 gtagcagtccttgcgggtgctgcacagcgcgtcctgcagcgtctgcagcttgctcccgaa 380

               
Query: 485 gaag 488
           ||||
Sbjct: 379 gaag 376
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>dbj|AK104638.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E03, full
           insert sequence
          Length = 956

 Score =  125 bits (63), Expect = 2e-25
 Identities = 199/244 (81%), Gaps = 3/244 (1%)
 Strand = Plus / Minus

                                                                       
Query: 248 gtagtggcaggcgtagttggccttcttcaacatggcggcctgtgcggcggcggcgatctc 307
           |||||||||||||  |||||||||||| |||| |||||||||  ||  |||||||  || 
Sbjct: 619 gtagtggcaggcgaggttggccttcttgaacaaggcggcctgctcgatggcggcggcctt 560

                                                                       
Query: 308 ggaggtgagcccgacggcgacgcactccttgacctggtaggcggtgtaggcgaactt--- 364
           ||||||||| |||| |  || |||   ||||||||| |  | |||||||||||||||   
Sbjct: 559 ggaggtgaggccgaggaggatgcaggacttgacctgctgcgtggtgtaggcgaacttggc 500

                                                                       
Query: 365 ctccttcttggcggcgatggcgttgatgtaggcggcggcgccctcgcgcagcaggtcccc 424
           || |||||||||||| | || ||||||||| |||||||||||||| || |||||||| ||
Sbjct: 499 ctgcttcttggcggccacggagttgatgtacgcggcggcgccctcccggagcaggtcgcc 440

                                                                       
Query: 425 gtagcagtcggtccgggtgttgcacagcgcgtnttgcagggtgtggaccttgctgccgaa 484
           |||||||||  | |||||| ||||||||||||  ||||| || || | |||||| |||||
Sbjct: 439 gtagcagtccttgcgggtgctgcacagcgcgtcctgcagcgtctgcagcttgctcccgaa 380

               
Query: 485 gaag 488
           ||||
Sbjct: 379 gaag 376
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>dbj|AK060896.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C12, full
           insert sequence
          Length = 977

 Score =  125 bits (63), Expect = 2e-25
 Identities = 199/244 (81%), Gaps = 3/244 (1%)
 Strand = Plus / Minus

                                                                       
Query: 248 gtagtggcaggcgtagttggccttcttcaacatggcggcctgtgcggcggcggcgatctc 307
           |||||||||||||  |||||||||||| |||| |||||||||  ||  |||||||  || 
Sbjct: 619 gtagtggcaggcgaggttggccttcttgaacaaggcggcctgctcgatggcggcggcctt 560

                                                                       
Query: 308 ggaggtgagcccgacggcgacgcactccttgacctggtaggcggtgtaggcgaactt--- 364
           ||||||||| |||| |  || |||   ||||||||| |  | |||||||||||||||   
Sbjct: 559 ggaggtgaggccgaggaggatgcaggacttgacctgctgcgtggtgtaggcgaacttggc 500

                                                                       
Query: 365 ctccttcttggcggcgatggcgttgatgtaggcggcggcgccctcgcgcagcaggtcccc 424
           || |||||||||||| | || ||||||||| |||||||||||||| || |||||||| ||
Sbjct: 499 ctgcttcttggcggccacggagttgatgtacgcggcggcgccctcccggagcaggtcgcc 440

                                                                       
Query: 425 gtagcagtcggtccgggtgttgcacagcgcgtnttgcagggtgtggaccttgctgccgaa 484
           |||||||||  | |||||| ||||||||||||  ||||| || || | |||||| |||||
Sbjct: 439 gtagcagtccttgcgggtgctgcacagcgcgtcctgcagcgtctgcagcttgctcccgaa 380

               
Query: 485 gaag 488
           ||||
Sbjct: 379 gaag 376
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>gb|AY112525.1| Zea mays CL98_-1 mRNA sequence
          Length = 936

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 374 ggcggcgatggcgttgatgtaggcggcggcgccctcgcgcagcaggtccccgtagcagtc 433
           |||||||| || ||||| |||||| |||||||||||||| || ||||| ||||||| |||
Sbjct: 361 ggcggcgacggagttgaggtaggccgcggcgccctcgcggaggaggtcgccgtagccgtc 420

                                  
Query: 434 ggtccgggtgttgcacagcgcgt 456
           ||  |||| ||||||||||||||
Sbjct: 421 ggcgcgggcgttgcacagcgcgt 443



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 249 tagtggcaggcgtagttggcctt 271
           |||||||||||||||||||||||
Sbjct: 239 tagtggcaggcgtagttggcctt 261
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>gb|AE005733.1| Caulobacter crescentus CB15 section 59 of 359 of the complete genome
          Length = 8219

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 402  gcgccctcgcgcagcaggtcc 422
            |||||||||||||||||||||
Sbjct: 1607 gcgccctcgcgcagcaggtcc 1587
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>gb|AC165317.8| Mus musculus chromosome 5, clone RP23-265O20, complete sequence
          Length = 190857

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aaaagcaaagcaaagcatca 53
             ||||||||||||||||||||
Sbjct: 23083 aaaagcaaagcaaagcatca 23102
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>gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0017M13,
             complete sequence
          Length = 161902

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   gcctgtgcggcggcggcgat 304
             ||||||||||||||||||||
Sbjct: 26593 gcctgtgcggcggcggcgat 26574
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    cggcggcggcgatctcggag 311
              ||||||||||||||||||||
Sbjct: 689304 cggcggcggcgatctcggag 689323
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 362     cttctccttcttggcggcga 381
               ||||||||||||||||||||
Sbjct: 1932541 cttctccttcttggcggcga 1932560
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 282     gcggcctgtgcggcggcggcgatc 305
               |||||||||||| |||||||||||
Sbjct: 2388572 gcggcctgtgcgccggcggcgatc 2388549
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>ref|XM_761265.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0837) partial mRNA
          Length = 3237

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   aaacaaacacataaaggcat 114
            ||||||||||||||||||||
Sbjct: 1056 aaacaaacacataaaggcat 1075
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 403     cgccctcgcgcagcaggtcc 422
               ||||||||||||||||||||
Sbjct: 2003252 cgccctcgcgcagcaggtcc 2003233
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>ref|XM_970122.1| PREDICTED: Tribolium castaneum similar to CG33143-PC, isoform C
           (LOC664106), mRNA
          Length = 1240

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 ggcggcctgtgcggcggcgg 300
           ||||||||||||||||||||
Sbjct: 841 ggcggcctgtgcggcggcgg 860
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>emb|X84374.3|SCARD1GN Saccharothrix mutabilis subsp. capreolus A201A biosynthetic gene
             cluster
          Length = 33676

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 395   ggcggcggcgccctcgcgcagcag 418
             |||||||||| |||||||||||||
Sbjct: 13226 ggcggcggcggcctcgcgcagcag 13249
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 383     ggcgttgatgtaggcggcggcgcc 406
               ||||||| ||||||||||||||||
Sbjct: 3212059 ggcgttgctgtaggcggcggcgcc 3212036
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    atggcggcctgtgcggcggc 298
              ||||||||||||||||||||
Sbjct: 423733 atggcggcctgtgcggcggc 423752
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>gb|DQ397635.1| Cenarchaeum symbiosum clone C05H05, complete sequence
          Length = 43064

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    cgagccggcatgacatgcat 83
             ||||||||||||||||||||
Sbjct: 18023 cgagccggcatgacatgcat 18042
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 283     cggcctgtgcggcggcggcg 302
               ||||||||||||||||||||
Sbjct: 4080753 cggcctgtgcggcggcggcg 4080772
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    ttgatgtaggcggcggcgcc 406
              ||||||||||||||||||||
Sbjct: 272047 ttgatgtaggcggcggcgcc 272028
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 285      gcctgtgcggcggcggcgat 304
                ||||||||||||||||||||
Sbjct: 13302118 gcctgtgcggcggcggcgat 13302099



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 285      gcctgtgcggcggcggcgat 304
                ||||||||||||||||||||
Sbjct: 13211771 gcctgtgcggcggcggcgat 13211752
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>gb|AF204401.1|AF204401 Streptomyces chrysomallus actinomycin synthetase III (acmC) gene,
            complete cds
          Length = 12744

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  cggcgccctcgcgcagcagg 419
            ||||||||||||||||||||
Sbjct: 4702 cggcgccctcgcgcagcagg 4683
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>gb|AE004681.1| Pseudomonas aeruginosa PAO1, section 242 of 529 of the complete
            genome
          Length = 11002

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 402  gcgccctcgcgcagcaggtc 421
            ||||||||||||||||||||
Sbjct: 4036 gcgccctcgcgcagcaggtc 4055
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 281    ggcggcctgtgcggcggcggcgat 304
              ||||||||| ||||||||||||||
Sbjct: 812925 ggcggcctgcgcggcggcggcgat 812948
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 291     gcggcggcggcgatctcggaggtg 314
               ||||||||||| ||||||||||||
Sbjct: 2789409 gcggcggcggccatctcggaggtg 2789386
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>dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, complete sequence
          Length = 184026

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    agtagtggcaggcgtagttg 266
              ||||||||||||||||||||
Sbjct: 137986 agtagtggcaggcgtagttg 138005
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>dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1136D08
          Length = 176635

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   gcctgtgcggcggcggcgat 304
             ||||||||||||||||||||
Sbjct: 53587 gcctgtgcggcggcggcgat 53568
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>dbj|AP006482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone: B1101E07
          Length = 158084

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   gcctgtgcggcggcggcgat 304
             ||||||||||||||||||||
Sbjct: 88122 gcctgtgcggcggcggcgat 88103
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>emb|AJ242827.1|STE242827 Streptomyces tendae afp gene and ORF2 (partial), strain Tue901/8c
          Length = 2082

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 tggcggcctgtgcggcggcggcga 303
           |||||||| |||||||||||||||
Sbjct: 480 tggcggccagtgcggcggcggcga 457
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>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF),
            panthotenate metabolism flavoprotein (dfp),
            deoxyuridine-triphosphatase (dut), putative sensor
            protein (bdfA), GalF-like (galF), hypothetical protein
            genes, complete cds; putative helicase 2 gene, partial
            cds; and unknown genes
          Length = 13289

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 281  ggcggcctgtgcggcggcggcgat 304
            ||||||||| ||||||||||||||
Sbjct: 3104 ggcggcctgcgcggcggcggcgat 3081
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>gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, complete sequence
          Length = 170850

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    aaaagcaaagcaaagcatca 53
             ||||||||||||||||||||
Sbjct: 11606 aaaagcaaagcaaagcatca 11587
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>dbj|AB014898.1| Mycoplana bullata gyrB gene for DNA gyrase subunit B, partial cds,
           clone:gy10009.icb
          Length = 1194

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 357 gcgaacttctccttcttggc 376
           ||||||||||||||||||||
Sbjct: 641 gcgaacttctccttcttggc 622
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>dbj|D37875.1|RERAMOA Nocardia corallina gene cluster for alkene monooxygenase (genes for
            epoxidase subunits, coupling protein and reductase),
            complete cds
          Length = 6379

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  cggcctgtgcggcggcggcg 302
            ||||||||||||||||||||
Sbjct: 6106 cggcctgtgcggcggcggcg 6087


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,026,390
Number of Sequences: 3902068
Number of extensions: 4026390
Number of successful extensions: 93843
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92787
Number of HSP's gapped (non-prelim): 1048
length of query: 513
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 490
effective length of database: 17,143,297,704
effective search space: 8400215874960
effective search space used: 8400215874960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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