ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25a16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108805.1| Zea mays PCO077883 mRNA sequence Length = 2049 Score = 311 bits (157), Expect = 1e-81 Identities = 372/441 (84%), Gaps = 2/441 (0%) Strand = Plus / Minus Query: 142 cgccggggttgggagctccggcagtccgctctcgccattcagcacaatgactttcccctc 201 |||||| |||| ||||||||| | |||| || ||||| ||||||| || |||||||| Sbjct: 1893 cgccggagttgagagctccggtatgccgccctgaccattgagcacaacaaccttcccctc 1834 Query: 202 cgagtccacatcaacaatcacagagtcgccctccttgacctccccgcccaaaatcttctc 261 |||||||||||| || || |||||||||||||||| |||||||| | | |||||||| Sbjct: 1833 cgagtccacatctactatggcagagtcgccctcctttacctcccctgcgagcatcttctc 1774 Query: 262 cgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagct 321 || |||||||||||||| ||||||||||| || | ||||| || || || || ||||| Sbjct: 1773 agcaaggctgtcctccagcagcctcatgatggctcgcctcagcgggcgtgcaccatagct 1714 Query: 322 agggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgcaggttgat 381 ||||||||| ||||||||||| |||||||||||||||||||| ||||| || || ||||| Sbjct: 1713 agggttgtagccttcgtccaccacccgctccttgaacttctcggtcacttgaagattgat 1654 Query: 382 gtccttgctcttcagcctagtgaaa-acctcctgcagcattatgttcgcgatctctttga 440 ||||||| ||||||||| || ||| |||||||| ||||| |||| ||| ||||| |||| Sbjct: 1653 gtccttggccttcagcct-gtcaaagacctcctggagcatgatgtccgctatctccttga 1595 Query: 441 cttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgagaaactccg 500 | || |||||||| ||||| ||||| |||||||| || |||||||||||||| ||||| | Sbjct: 1594 cctcgagcttggtaagctgcctgaacacgatcatctcatcgagacggttgaggaactcag 1535 Query: 501 gtcggaagtactgcttcatctcctcgaccaccaagctcttgatcctgccatagctgctgt 560 ||||||| ||||||||||||||||||| |||| |||||||||||||| ||||| |||| Sbjct: 1534 gtcggaaatactgcttcatctcctcgatgaccaggctcttgatcctgctgtagctactgt 1475 Query: 561 ccttctcgtctgagtcgaggt 581 ||||||| || ||||| |||| Sbjct: 1474 ccttctcatcagagtcaaggt 1454
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 281 bits (142), Expect = 1e-72 Identities = 333/394 (84%), Gaps = 2/394 (0%) Strand = Plus / Plus Query: 175 gccattcagcacaatgactttcccctccgagtccacatcaacaatcacagagtcgccctc 234 ||||||||| ||||| || |||||||| || |||||||| ||||| |||| || ||||| Sbjct: 7095126 gccattcagtacaatcaccttcccctcggaatccacatcgacaatggcagaatcaccctc 7095185 Query: 235 cttgacctccccgcccaaaatcttctccgcgaggctgtcctccagaagcctcatgatcgc 294 ||| |||||||| | | |||||||||||||||||||||||||| ||||||||||| || Sbjct: 7095186 cttcacctccccagctagcatcttctccgcgaggctgtcctccaggagcctcatgatggc 7095245 Query: 295 cctcctcaatggccgcgctccgtagctagggttgtacccttcgtccacgacccgctcctt 354 |||||| | |||| ||| || ||||| |||||| | |||||||| |||| |||||||| Sbjct: 7095246 cctccttagcggcctcgcaccatagctcgggttgaagccttcgtcaacgatacgctcctt 7095305 Query: 355 gaacttctccgtcacctgcaggttgatgtccttgctcttcagcctagtgaaa-acctcct 413 ||||||||| || ||||| |||| ||||||||| ||| ||||| || ||| ||||||| Sbjct: 7095306 gaacttctcggtgacctggaggtcaatgtccttggccttgagcct-gtcaaagacctcct 7095364 Query: 414 gcagcattatgttcgcgatctctttgacttccagcttggtcagctgtctgaagacgatca 473 ||||| || | |||||||| ||||| ||||||||||| || || ||||||||||||| Sbjct: 7095365 tgagcatgatctcggcgatctccttgacctccagcttggtgagttgcctgaagacgatca 7095424 Query: 474 tttcgtcgagacggttgagaaactccggtcggaagtactgcttcatctcctcgaccacca 533 | ||||||||||||||||| ||||| || |||||||||||||||||||||||||| || | Sbjct: 7095425 tctcgtcgagacggttgaggaactcggggcggaagtactgcttcatctcctcgacgacaa 7095484 Query: 534 agctcttgatcctgccatagctgctgtccttctc 567 |||||||||||||| ||||||||||||||||| Sbjct: 7095485 ggctcttgatcctgctgtagctgctgtccttctc 7095518
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 281 bits (142), Expect = 1e-72 Identities = 333/394 (84%), Gaps = 2/394 (0%) Strand = Plus / Plus Query: 175 gccattcagcacaatgactttcccctccgagtccacatcaacaatcacagagtcgccctc 234 ||||||||| ||||| || |||||||| || |||||||| ||||| |||| || ||||| Sbjct: 7095005 gccattcagtacaatcaccttcccctcggaatccacatcgacaatggcagaatcaccctc 7095064 Query: 235 cttgacctccccgcccaaaatcttctccgcgaggctgtcctccagaagcctcatgatcgc 294 ||| |||||||| | | |||||||||||||||||||||||||| ||||||||||| || Sbjct: 7095065 cttcacctccccagctagcatcttctccgcgaggctgtcctccaggagcctcatgatggc 7095124 Query: 295 cctcctcaatggccgcgctccgtagctagggttgtacccttcgtccacgacccgctcctt 354 |||||| | |||| ||| || ||||| |||||| | |||||||| |||| |||||||| Sbjct: 7095125 cctccttagcggcctcgcaccatagctcgggttgaagccttcgtcaacgatacgctcctt 7095184 Query: 355 gaacttctccgtcacctgcaggttgatgtccttgctcttcagcctagtgaaa-acctcct 413 ||||||||| || ||||| |||| ||||||||| ||| ||||| || ||| ||||||| Sbjct: 7095185 gaacttctcggtgacctggaggtcaatgtccttggccttgagcct-gtcaaagacctcct 7095243 Query: 414 gcagcattatgttcgcgatctctttgacttccagcttggtcagctgtctgaagacgatca 473 ||||| || | |||||||| ||||| ||||||||||| || || ||||||||||||| Sbjct: 7095244 tgagcatgatctcggcgatctccttgacctccagcttggtgagttgcctgaagacgatca 7095303 Query: 474 tttcgtcgagacggttgagaaactccggtcggaagtactgcttcatctcctcgaccacca 533 | ||||||||||||||||| ||||| || |||||||||||||||||||||||||| || | Sbjct: 7095304 tctcgtcgagacggttgaggaactcggggcggaagtactgcttcatctcctcgacgacaa 7095363 Query: 534 agctcttgatcctgccatagctgctgtccttctc 567 |||||||||||||| ||||||||||||||||| Sbjct: 7095364 ggctcttgatcctgctgtagctgctgtccttctc 7095397
>emb|AL928782.4|CNS08CCC Oryza sativa chromosome 12, . BAC OSJNBb0069I24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 68450 Score = 281 bits (142), Expect = 1e-72 Identities = 333/394 (84%), Gaps = 2/394 (0%) Strand = Plus / Plus Query: 175 gccattcagcacaatgactttcccctccgagtccacatcaacaatcacagagtcgccctc 234 ||||||||| ||||| || |||||||| || |||||||| ||||| |||| || ||||| Sbjct: 62812 gccattcagtacaatcaccttcccctcggaatccacatcgacaatggcagaatcaccctc 62871 Query: 235 cttgacctccccgcccaaaatcttctccgcgaggctgtcctccagaagcctcatgatcgc 294 ||| |||||||| | | |||||||||||||||||||||||||| ||||||||||| || Sbjct: 62872 cttcacctccccagctagcatcttctccgcgaggctgtcctccaggagcctcatgatggc 62931 Query: 295 cctcctcaatggccgcgctccgtagctagggttgtacccttcgtccacgacccgctcctt 354 |||||| | |||| ||| || ||||| |||||| | |||||||| |||| |||||||| Sbjct: 62932 cctccttagcggcctcgcaccatagctcgggttgaagccttcgtcaacgatacgctcctt 62991 Query: 355 gaacttctccgtcacctgcaggttgatgtccttgctcttcagcctagtgaaa-acctcct 413 ||||||||| || ||||| |||| ||||||||| ||| ||||| || ||| ||||||| Sbjct: 62992 gaacttctcggtgacctggaggtcaatgtccttggccttgagcct-gtcaaagacctcct 63050 Query: 414 gcagcattatgttcgcgatctctttgacttccagcttggtcagctgtctgaagacgatca 473 ||||| || | |||||||| ||||| ||||||||||| || || ||||||||||||| Sbjct: 63051 tgagcatgatctcggcgatctccttgacctccagcttggtgagttgcctgaagacgatca 63110 Query: 474 tttcgtcgagacggttgagaaactccggtcggaagtactgcttcatctcctcgaccacca 533 | ||||||||||||||||| ||||| || |||||||||||||||||||||||||| || | Sbjct: 63111 tctcgtcgagacggttgaggaactcggggcggaagtactgcttcatctcctcgacgacaa 63170 Query: 534 agctcttgatcctgccatagctgctgtccttctc 567 |||||||||||||| ||||||||||||||||| Sbjct: 63171 ggctcttgatcctgctgtagctgctgtccttctc 63204
>emb|BX842241.1|CNS0B0PM Oryza sativa chromosome 12, . Partial sequence from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 45687 Score = 281 bits (142), Expect = 1e-72 Identities = 333/394 (84%), Gaps = 2/394 (0%) Strand = Plus / Plus Query: 175 gccattcagcacaatgactttcccctccgagtccacatcaacaatcacagagtcgccctc 234 ||||||||| ||||| || |||||||| || |||||||| ||||| |||| || ||||| Sbjct: 3426 gccattcagtacaatcaccttcccctcggaatccacatcgacaatggcagaatcaccctc 3485 Query: 235 cttgacctccccgcccaaaatcttctccgcgaggctgtcctccagaagcctcatgatcgc 294 ||| |||||||| | | |||||||||||||||||||||||||| ||||||||||| || Sbjct: 3486 cttcacctccccagctagcatcttctccgcgaggctgtcctccaggagcctcatgatggc 3545 Query: 295 cctcctcaatggccgcgctccgtagctagggttgtacccttcgtccacgacccgctcctt 354 |||||| | |||| ||| || ||||| |||||| | |||||||| |||| |||||||| Sbjct: 3546 cctccttagcggcctcgcaccatagctcgggttgaagccttcgtcaacgatacgctcctt 3605 Query: 355 gaacttctccgtcacctgcaggttgatgtccttgctcttcagcctagtgaaa-acctcct 413 ||||||||| || ||||| |||| ||||||||| ||| ||||| || ||| ||||||| Sbjct: 3606 gaacttctcggtgacctggaggtcaatgtccttggccttgagcct-gtcaaagacctcct 3664 Query: 414 gcagcattatgttcgcgatctctttgacttccagcttggtcagctgtctgaagacgatca 473 ||||| || | |||||||| ||||| ||||||||||| || || ||||||||||||| Sbjct: 3665 tgagcatgatctcggcgatctccttgacctccagcttggtgagttgcctgaagacgatca 3724 Query: 474 tttcgtcgagacggttgagaaactccggtcggaagtactgcttcatctcctcgaccacca 533 | ||||||||||||||||| ||||| || |||||||||||||||||||||||||| || | Sbjct: 3725 tctcgtcgagacggttgaggaactcggggcggaagtactgcttcatctcctcgacgacaa 3784 Query: 534 agctcttgatcctgccatagctgctgtccttctc 567 |||||||||||||| ||||||||||||||||| Sbjct: 3785 ggctcttgatcctgctgtagctgctgtccttctc 3818
>dbj|AK066153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058A21, full insert sequence Length = 3088 Score = 262 bits (132), Expect = 1e-66 Identities = 323/384 (84%), Gaps = 2/384 (0%) Strand = Plus / Minus Query: 185 acaatgactttcccctccgagtccacatcaacaatcacagagtcgccctccttgacctcc 244 ||||| || |||||||| || |||||||| ||||| |||| || |||||||| |||||| Sbjct: 2834 acaatcaccttcccctcggaatccacatcgacaatggcagaatcaccctccttcacctcc 2775 Query: 245 ccgcccaaaatcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaat 304 || | | |||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct: 2774 ccagctagcatcttctccgcgaggctgtcctccaggagcctcatgatggccctccttagc 2715 Query: 305 ggccgcgctccgtagctagggttgtacccttcgtccacgacccgctccttgaacttctcc 364 |||| ||| || ||||| |||||| | |||||||| |||| ||||||||||||||||| Sbjct: 2714 ggcctcgcaccatagctcgggttgaagccttcgtcaacgatacgctccttgaacttctcg 2655 Query: 365 gtcacctgcaggttgatgtccttgctcttcagcctagtgaaa-acctcctgcagcattat 423 || ||||| |||| | ||||||| ||| ||||| || ||| ||||||| ||||| || Sbjct: 2654 gtgacctggaggtcaacgtccttggccttgagcct-gtcaaagacctccttgagcatgat 2596 Query: 424 gttcgcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgag 483 | |||||||| ||||| ||||||||||| || || |||||||||||||| |||||||| Sbjct: 2595 ctcggcgatctccttgacctccagcttggtgagttgcctgaagacgatcatctcgtcgag 2536 Query: 484 acggttgagaaactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgat 543 ||||||||| ||||| || |||||||||||||||||||||||||| || | ||||||||| Sbjct: 2535 acggttgaggaactcggggcggaagtactgcttcatctcctcgacgacaaggctcttgat 2476 Query: 544 cctgccatagctgctgtccttctc 567 ||||| ||||||||||||||||| Sbjct: 2475 cctgctgtagctgctgtccttctc 2452
>ref|XM_472335.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2667 Score = 101 bits (51), Expect = 3e-18 Identities = 156/191 (81%) Strand = Plus / Minus Query: 197 ccctccgagtccacatcaacaatcacagagtcgccctccttgacctccccgcccaaaatc 256 ||||| || |||||||||||||| ||||||| || ||||||||||| || |||| ||| Sbjct: 2600 ccctctgaatccacatcaacaatagcagagtcaccttccttgacctcgccagccaacatc 2541 Query: 257 ttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccg 316 |||||||| | ||||||||||||||||||||| || || | || || |||| || || Sbjct: 2540 ttctccgccaagctgtcctccagaagcctcataatagcacgccgcagaggcctggcacca 2481 Query: 317 tagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgcagg 376 ||||| |||||||| |||||||| || || | ||| ||||||||| |||||||| ||| Sbjct: 2480 tagcttgggttgtaaccttcgtcgacaactctatcccggaacttctctgtcacctggagg 2421 Query: 377 ttgatgtcctt 387 | ||||||||| Sbjct: 2420 tcgatgtcctt 2410 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 494 aactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgatcct 546 ||||| ||||||||||||||||||| ||| || |||||||||||| ||||| Sbjct: 2303 aactcaggtcggaagtactgcttcagctcttcagtcaccaagctcttaatcct 2251
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 101 bits (51), Expect = 3e-18 Identities = 156/191 (81%) Strand = Plus / Plus Query: 197 ccctccgagtccacatcaacaatcacagagtcgccctccttgacctccccgcccaaaatc 256 ||||| || |||||||||||||| ||||||| || ||||||||||| || |||| ||| Sbjct: 19610437 ccctctgaatccacatcaacaatagcagagtcaccttccttgacctcgccagccaacatc 19610496 Query: 257 ttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccg 316 |||||||| | ||||||||||||||||||||| || || | || || |||| || || Sbjct: 19610497 ttctccgccaagctgtcctccagaagcctcataatagcacgccgcagaggcctggcacca 19610556 Query: 317 tagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgcagg 376 ||||| |||||||| |||||||| || || | ||| ||||||||| |||||||| ||| Sbjct: 19610557 tagcttgggttgtaaccttcgtcgacaactctatcccggaacttctctgtcacctggagg 19610616 Query: 377 ttgatgtcctt 387 | ||||||||| Sbjct: 19610617 tcgatgtcctt 19610627 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 494 aactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgatcct 546 ||||| ||||||||||||||||||| ||| || |||||||||||| ||||| Sbjct: 19610734 aactcaggtcggaagtactgcttcagctcttcagtcaccaagctcttaatcct 19610786
>dbj|AK058510.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G07, full insert sequence Length = 1527 Score = 101 bits (51), Expect = 3e-18 Identities = 156/191 (81%) Strand = Plus / Minus Query: 197 ccctccgagtccacatcaacaatcacagagtcgccctccttgacctccccgcccaaaatc 256 ||||| || |||||||||||||| ||||||| || ||||||||||| || |||| ||| Sbjct: 1150 ccctctgaatccacatcaacaatagcagagtcaccttccttgacctcgccagccaacatc 1091 Query: 257 ttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccg 316 |||||||| | ||||||||||||||||||||| || || | || || |||| || || Sbjct: 1090 ttctccgccaagctgtcctccagaagcctcataatagcacgccgcagaggcctggcacca 1031 Query: 317 tagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgcagg 376 ||||| |||||||| |||||||| || || | ||| ||||||||| |||||||| ||| Sbjct: 1030 tagcttgggttgtaaccttcgtcgacaactctatcccggaacttctctgtcacctggagg 971 Query: 377 ttgatgtcctt 387 | ||||||||| Sbjct: 970 tcgatgtcctt 960 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 494 aactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgatcct 546 ||||| ||||||||||||||||||| ||| || |||||||||||| ||||| Sbjct: 853 aactcaggtcggaagtactgcttcagctcttcagtcaccaagctcttaatcct 801
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 101 bits (51), Expect = 3e-18 Identities = 156/191 (81%) Strand = Plus / Plus Query: 197 ccctccgagtccacatcaacaatcacagagtcgccctccttgacctccccgcccaaaatc 256 ||||| || |||||||||||||| ||||||| || ||||||||||| || |||| ||| Sbjct: 61163 ccctctgaatccacatcaacaatagcagagtcaccttccttgacctcgccagccaacatc 61222 Query: 257 ttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccg 316 |||||||| | ||||||||||||||||||||| || || | || || |||| || || Sbjct: 61223 ttctccgccaagctgtcctccagaagcctcataatagcacgccgcagaggcctggcacca 61282 Query: 317 tagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgcagg 376 ||||| |||||||| |||||||| || || | ||| ||||||||| |||||||| ||| Sbjct: 61283 tagcttgggttgtaaccttcgtcgacaactctatcccggaacttctctgtcacctggagg 61342 Query: 377 ttgatgtcctt 387 | ||||||||| Sbjct: 61343 tcgatgtcctt 61353 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 494 aactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgatcct 546 ||||| ||||||||||||||||||| ||| || |||||||||||| ||||| Sbjct: 61460 aactcaggtcggaagtactgcttcagctcttcagtcaccaagctcttaatcct 61512
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Minus Query: 428 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 487 ||||| ||||||||||| |||| | ||||| | ||||||||| ||||||||||||||| Sbjct: 1364633 gcgatttctttgacttcttccttgttgagctgacagaagacgatgatttcgtcgagacgg 1364574 Query: 488 ttgagaaactccggtcggaagtactgcttca 518 || |||||||| || |||||||| ||||||| Sbjct: 1364573 ttcagaaactcaggacggaagtattgcttca 1364543
>gb|U16134.1|SSU16134 Synechococcus sp. Clp protease putative regulatory subunit (clpC) gene, complete cds Length = 2935 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Minus Query: 428 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 487 ||||| ||||||||||| |||| | ||||| | ||||||||| ||||||||||||||| Sbjct: 2529 gcgatttctttgacttcttccttgttgagctgacggaagacgatgatttcgtcgagacgg 2470 Query: 488 ttgagaaactccggtcggaagtactgcttca 518 || |||||||| || |||||||| ||||||| Sbjct: 2469 ttcagaaactcaggacggaagtattgcttca 2439
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 428 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 487 ||||| ||||||||||| |||| | ||||| | ||||||||| ||||||||||||||| Sbjct: 256250 gcgatttctttgacttcttccttgttgagctgacggaagacgatgatttcgtcgagacgg 256309 Query: 488 ttgagaaactccggtcggaagtactgcttca 518 || |||||||| || |||||||| ||||||| Sbjct: 256310 ttcagaaactcaggacggaagtattgcttca 256340
>gb|AC138005.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0038O16, complete sequence Length = 37350 Score = 73.8 bits (37), Expect = 6e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 428 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 487 |||||||| || || |||||||| |||||||| | ||| |||||||| ||||| || ||| Sbjct: 6134 gcgatctccttcacctccagcttcgtcagctgccggaacacgatcatctcgtccagccgg 6193 Query: 488 ttgagaaactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgatc 544 || || |||||||| | |||||| ||||||||||||| |||||| | |||||||| Sbjct: 6194 ttcaggaactccggcctgaagtagcgcttcatctcctcctccaccatgttcttgatc 6250 Score = 60.0 bits (30), Expect = 9e-06 Identities = 87/106 (82%) Strand = Plus / Plus Query: 270 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 329 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 5976 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 6035 Query: 330 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 375 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 6036 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 6081
>gb|AC138002.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0011I07 map S10207, complete sequence Length = 123847 Score = 73.8 bits (37), Expect = 6e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 428 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 487 |||||||| || || |||||||| |||||||| | ||| |||||||| ||||| || ||| Sbjct: 103518 gcgatctccttcacctccagcttcgtcagctgccggaacacgatcatctcgtccagccgg 103577 Query: 488 ttgagaaactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgatc 544 || || |||||||| | |||||| ||||||||||||| |||||| | |||||||| Sbjct: 103578 ttcaggaactccggcctgaagtagcgcttcatctcctcctccaccatgttcttgatc 103634 Score = 60.0 bits (30), Expect = 9e-06 Identities = 87/106 (82%) Strand = Plus / Plus Query: 270 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 329 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 103360 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 103419 Query: 330 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 375 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 103420 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 103465
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 73.8 bits (37), Expect = 6e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 428 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 487 |||||||| || || |||||||| |||||||| | ||| |||||||| ||||| || ||| Sbjct: 9094944 gcgatctccttcacctccagcttcgtcagctgccggaacacgatcatctcgtccagccgg 9095003 Query: 488 ttgagaaactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgatc 544 || || |||||||| | |||||| ||||||||||||| |||||| | |||||||| Sbjct: 9095004 ttcaggaactccggcctgaagtagcgcttcatctcctcctccaccatgttcttgatc 9095060 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 254 atcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgct 313 ||||||||||||||| |||||||||| |||| || || |||| ||||| |||| ||| Sbjct: 9198113 atcttctccgcgagggtgtcctccagcagccgcacgacggcccgcctcagcggcctcgcg 9198172 Query: 314 ccgtagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgc 373 |||||||| |||| | | || || |||||||| ||||| ||||||| |||||||||| | Sbjct: 9198173 ccgtagctcgggtcgaatccctcctccacgacgagctccctgaacttgtccgtcaccttc 9198232 Query: 374 aggttgat 381 || ||||| Sbjct: 9198233 agcttgat 9198240 Score = 60.0 bits (30), Expect = 9e-06 Identities = 87/106 (82%) Strand = Plus / Plus Query: 270 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 329 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 9094786 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 9094845 Query: 330 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 375 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 9094846 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 9094891
>dbj|AK100126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008I20, full insert sequence Length = 3229 Score = 73.8 bits (37), Expect = 6e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 428 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 487 |||||||| || || |||||||| |||||||| | ||| |||||||| ||||| || ||| Sbjct: 2662 gcgatctccttcacctccagcttcgtcagctgccggaacacgatcatctcgtccagccgg 2603 Query: 488 ttgagaaactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgatc 544 || || |||||||| | |||||| ||||||||||||| |||||| | |||||||| Sbjct: 2602 ttcaggaactccggcctgaagtagcgcttcatctcctcctccaccatgttcttgatc 2546 Score = 60.0 bits (30), Expect = 9e-06 Identities = 87/106 (82%) Strand = Plus / Minus Query: 270 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 329 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 2820 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 2761 Query: 330 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 375 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 2760 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 2715
>dbj|AK069552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023N03, full insert sequence Length = 3226 Score = 73.8 bits (37), Expect = 6e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 428 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 487 |||||||| || || |||||||| |||||||| | ||| |||||||| ||||| || ||| Sbjct: 2654 gcgatctccttcacctccagcttcgtcagctgccggaacacgatcatctcgtccagccgg 2595 Query: 488 ttgagaaactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgatc 544 || || |||||||| | |||||| ||||||||||||| |||||| | |||||||| Sbjct: 2594 ttcaggaactccggcctgaagtagcgcttcatctcctcctccaccatgttcttgatc 2538 Score = 60.0 bits (30), Expect = 9e-06 Identities = 87/106 (82%) Strand = Plus / Minus Query: 270 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 329 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 2812 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 2753 Query: 330 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 375 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 2752 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 2707
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 73.8 bits (37), Expect = 6e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 428 gcgatctctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacgg 487 |||||||| || || |||||||| |||||||| | ||| |||||||| ||||| || ||| Sbjct: 9166641 gcgatctccttcacctccagcttcgtcagctgccggaacacgatcatctcgtccagccgg 9166700 Query: 488 ttgagaaactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgatc 544 || || |||||||| | |||||| ||||||||||||| |||||| | |||||||| Sbjct: 9166701 ttcaggaactccggcctgaagtagcgcttcatctcctcctccaccatgttcttgatc 9166757 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 254 atcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgct 313 ||||||||||||||| |||||||||| |||| || || |||| ||||| |||| ||| Sbjct: 9269810 atcttctccgcgagggtgtcctccagcagccgcacgacggcccgcctcagcggcctcgcg 9269869 Query: 314 ccgtagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgc 373 |||||||| |||| | | || || |||||||| ||||| ||||||| |||||||||| | Sbjct: 9269870 ccgtagctcgggtcgaatccctcctccacgacgagctccctgaacttgtccgtcaccttc 9269929 Query: 374 aggttgat 381 || ||||| Sbjct: 9269930 agcttgat 9269937 Score = 60.0 bits (30), Expect = 9e-06 Identities = 87/106 (82%) Strand = Plus / Plus Query: 270 tgtcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgt 329 |||||||||| |||| |||||| |||| | || |||||||| |||||||| |||| | Sbjct: 9166483 tgtcctccagcagccgcatgatggcccggcgcagcggccgcgcgccgtagctcgggtcga 9166542 Query: 330 acccttcgtccacgacccgctccttgaacttctccgtcacctgcag 375 | |||| || ||||| ||||||||||| |||||||||||||||| Sbjct: 9166543 agccttgctcgacgacgagctccttgaacctctccgtcacctgcag 9166588
>gb|AC135498.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0010M24, complete sequence Length = 164853 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Minus Query: 254 atcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgct 313 ||||||||||||||| |||||||||| |||| || || |||| ||||| |||| ||| Sbjct: 85907 atcttctccgcgagggtgtcctccagcagccgcacgacggcccgcctcagcggcctcgcg 85848 Query: 314 ccgtagctagggttgtacccttcgtccacgacccgctccttgaacttctccgtcacctgc 373 |||||||| |||| | | || || |||||||| ||||| ||||||| |||||||||| | Sbjct: 85847 ccgtagctcgggtcgaatccctcctccacgacgagctccctgaacttgtccgtcaccttc 85788 Query: 374 aggttgat 381 || ||||| Sbjct: 85787 agcttgat 85780
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 69.9 bits (35), Expect = 9e-09 Identities = 68/79 (86%) Strand = Plus / Minus Query: 448 cttggtcagctgtctgaagacgatcatttcgtcgagacggttgagaaactccggtcggaa 507 ||||||||| || | ||||||||| || ||||| | |||||||| |||||||| ||||| Sbjct: 619794 cttggtcagttgccggaagacgatgatctcgtccacgcggttgaggaactccggacggaa 619735 Query: 508 gtactgcttcatctcctcg 526 ||||||||||| ||||||| Sbjct: 619734 gtactgcttcagctcctcg 619716 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 485 cggttgagaaactccggtcggaagt 509 |||||||| |||||||||||||||| Sbjct: 2623570 cggttgaggaactccggtcggaagt 2623594
>emb|X75328.1|BNCLPA B.napus (Topas) clpA mRNA Length = 2837 Score = 67.9 bits (34), Expect = 3e-08 Identities = 106/130 (81%) Strand = Plus / Minus Query: 440 acttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgagaaactcc 499 ||||||| ||| || ||||||||||| | ||||| ||||| || | |||||| |||||| Sbjct: 2302 acttccaacttcgttagctgtctgaacagaatcatctcgtcaagcctgttgaggaactcc 2243 Query: 500 ggtcggaagtactgcttcatctcctcgaccaccaagctcttgatcctgccatagctgctg 559 |||| ||||||||| |||| ||||| | ||| | ||||||||| ||| ||||||||| Sbjct: 2242 ggtctgaagtactgtttcaactcctgggtcacaaggctcttgattctgttgtagctgctg 2183 Query: 560 tccttctcgt 569 || ||||||| Sbjct: 2182 tctttctcgt 2173 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 254 atcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgct 313 ||||||||| | | ||| ||||||| ||| |||||||| || |||||||| || | |||| Sbjct: 2488 atcttctcctccatgctatcctccaaaagtctcatgatggctctcctcaacggtctcgct 2429 Query: 314 ccgtagctagggttgtacccttcgtccac 342 || ||||| |||||||| ||||||||||| Sbjct: 2428 ccatagctcgggttgtaaccttcgtccac 2400
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 63.9 bits (32), Expect = 5e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 448 cttggtcagctgtctgaagacgatcatttcgtcgagacggttgagaaactccggtcggaa 507 ||||||||| || | ||||||||| || ||||| | |||||||| ||||| || ||||| Sbjct: 666391 cttggtcagttgccggaagacgatgatctcgtccacccggttgaggaactcggggcggaa 666332 Query: 508 gtactgcttcatctcctcgaccaccaag 535 ||||||||||| ||||||| ||||||| Sbjct: 666331 gtactgcttcagctcctcgtgcaccaag 666304
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 463 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaagtactgcttcatctc 522 ||||||||| || ||||||||||||||||| || || || |||||||||||||| | ||| Sbjct: 1496399 gaagacgataatctcgtcgagacggttgaggaattcagggcggaagtactgctttagctc 1496458 Query: 523 ctc 525 ||| Sbjct: 1496459 ctc 1496461
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 440 acttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgagaaactcc 499 ||||| |||||| ||| ||| | ||||||||| || ||||| ||||||||||| ||||| Sbjct: 3644559 acttctagcttgctcaactgacggaagacgataatctcgtctagacggttgaggaactca 3644500 Query: 500 ggtcggaagtactgcttca 518 || |||||||| ||||||| Sbjct: 3644499 ggacggaagtattgcttca 3644481
>gb|AF053562.1|AF053562 Mesembryanthemum crystallinum ATP-dependent protease mRNA, partial cds Length = 531 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 254 atcttctccgcgaggctgtcctccagaagcctcatgatcgccctcctcaatggccgcgct 313 |||||||| || | ||||||||||||||| ||||| || |||||||||| ||||| || Sbjct: 101 atcttctcggccatgctgtcctccagaagtctcataatagccctcctcagaggccgagca 42 Query: 314 ccgtagctagggttgta 330 || ||||| |||||||| Sbjct: 41 ccatagctggggttgta 25
>ref|NM_124471.2| Arabidopsis thaliana CLPC; ATP binding / ATPase AT5G50920 (CLPC) mRNA, complete cds Length = 3183 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 434 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgaga 493 ||||| ||||||||||| || ||||||||||| || ||||| ||||| || | ||| || Sbjct: 2626 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtctagcctgtttagg 2567 Query: 494 aactccggtcggaagtactgcttcatctcctc 525 ||||| |||| |||||| || |||| |||||| Sbjct: 2566 aactcgggtctgaagtattgtttcagctcctc 2535
>gb|AY102125.1| Arabidopsis thaliana AT5g50920/K3K7_7 mRNA, complete cds Length = 3125 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 434 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgaga 493 ||||| ||||||||||| || ||||||||||| || ||||| ||||| || | ||| || Sbjct: 2601 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtctagcctgtttagg 2542 Query: 494 aactccggtcggaagtactgcttcatctcctc 525 ||||| |||| |||||| || |||| |||||| Sbjct: 2541 aactcgggtctgaagtattgtttcagctcctc 2510
>dbj|AK220924.1| Arabidopsis thaliana mRNA for ATP-dependent Clp protease, ATP-binding subunit, complete cds, clone: RAFL22-49-P06 Length = 774 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 434 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgaga 493 ||||| ||||||||||| || ||||||||||| || ||||| ||||| || | ||| || Sbjct: 258 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtctagcctgtttagg 199 Query: 494 aactccggtcggaagtactgcttcatctcctc 525 ||||| |||| |||||| || |||| |||||| Sbjct: 198 aactcgggtctgaagtattgtttcagctcctc 167
>emb|BX830850.1|CNS0A0O2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS30ZG04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1161 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 434 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgaga 493 ||||| ||||||||||| || ||||||||||| || ||||| ||||| || | ||| || Sbjct: 672 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtctagcctgtttagg 613 Query: 494 aactccggtcggaagtactgcttcatctcctc 525 ||||| |||| |||||| || |||| |||||| Sbjct: 612 aactcgggtctgaagtattgtttcagctcctc 581
>dbj|AB017063.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K3K7 Length = 68726 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 434 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgaga 493 ||||| ||||||||||| || ||||||||||| || ||||| ||||| || | ||| || Sbjct: 18518 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtctagcctgtttagg 18577 Query: 494 aactccggtcggaagtactgcttcatctcctc 525 ||||| |||| |||||| || |||| |||||| Sbjct: 18578 aactcgggtctgaagtattgtttcagctcctc 18609
>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7 Length = 347365 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 467 acgatcatttcgtcgagacggttgagaaactccggtcggaagtactgcttcatctcctc 525 ||||| || |||||||| |||||||| || || || |||||||||||||||| |||||| Sbjct: 202083 acgatgatctcgtcgagccggttgaggaattcagggcggaagtactgcttcagctcctc 202025
>dbj|D29692.1|RICYK4 Oryza sativa mRNA, partial homologous to ATP-dependent protease gene Length = 349 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 494 aactccggtcggaagtactgcttcatctcctcgaccaccaagctcttgatcct 546 ||||| ||||||||||||||||||| ||| || |||||||||||| ||||| Sbjct: 191 aactcaggtcggaagtactgcttcagctcttcagtcaccaagctcttaatcct 139
>gb|AY837846.1| Bifidobacterium animalis subsp. animalis ATCC 25527 ctA, ClpB (clpB), and FaaH (faaH) genes, complete cds Length = 5198 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 476 tcgtcgagacggttgagaaactccggtcggaa 507 ||||||||||||||||| |||||||| ||||| Sbjct: 1836 tcgtcgagacggttgaggaactccggacggaa 1867
>gb|AF022909.1| Arabidopsis thaliana ClpC mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2912 Score = 48.1 bits (24), Expect = 0.032 Identities = 75/92 (81%) Strand = Plus / Minus Query: 434 tctttgacttccagcttggtcagctgtctgaagacgatcatttcgtcgagacggttgaga 493 ||||| ||||||||||| || ||||||||||| || ||||| ||||| || | ||| || Sbjct: 2574 tctttcacttccagctttgttagctgtctgaacacaatcatctcgtctagcctgtttagg 2515 Query: 494 aactccggtcggaagtactgcttcatctcctc 525 ||||| |||| ||| || || |||| |||||| Sbjct: 2514 aactcgggtctgaaatattgtttcagctcctc 2483
>gb|AF043539.1|AF043539 Spinacia oleracea ClpC protease (clpC) mRNA, chloroplast gene encoding chloroplast protein, complete cds Length = 2992 Score = 48.1 bits (24), Expect = 0.032 Identities = 63/76 (82%) Strand = Plus / Minus Query: 272 tcctccagaagcctcatgatcgccctcctcaatggccgcgctccgtagctagggttgtac 331 ||||||||||| ||||| || ||||||||||| || | || || || ||||||||||| Sbjct: 2773 tcctccagaagtctcataatagccctcctcaaaggtctagcaccataactagggttgtag 2714 Query: 332 ccttcgtccacgaccc 347 ||||| ||||| |||| Sbjct: 2713 ccttcatccaccaccc 2698
>emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome; segment 4/7 Length = 346683 Score = 48.1 bits (24), Expect = 0.032 Identities = 42/48 (87%) Strand = Plus / Minus Query: 463 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaagta 510 ||||||||| ||||| ||||||||||| ||||| || || |||||||| Sbjct: 97628 gaagacgataatttcatcgagacggttcagaaattcaggacggaagta 97581
>gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete sequence Length = 129513 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 529 caccaagctcttgatcctgccatagctgctgtccttctc 567 ||||||||||||||| ||| ||| |||||||||||||| Sbjct: 36329 caccaagctcttgattctgttataactgctgtccttctc 36367
>emb|BX649451.4| Zebrafish DNA sequence from clone DKEY-206M7 in linkage group 10, complete sequence Length = 97299 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 5 tattactgtatattttatacagttac 30 ||||||||||||||||||||| |||| Sbjct: 80111 tattactgtatattttatacatttac 80136
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 44.1 bits (22), Expect = 0.51 Identities = 46/54 (85%) Strand = Plus / Minus Query: 463 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaagtactgctt 516 |||||| || || |||||||| || ||||| ||||| || |||||||||||||| Sbjct: 2217650 gaagacaatgatctcgtcgaggcgattgaggaactcggggcggaagtactgctt 2217597 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Minus Query: 463 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaag 508 ||||||||||| |||||||| |||||||| ||||| || |||||| Sbjct: 1664658 gaagacgatcacctcgtcgaggcggttgaggaactcggggcggaag 1664613
>gb|AC140431.4| Mus musculus BAC clone RP24-172K3 from chromosome 7, complete sequence Length = 172958 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 434 tctttgacttccagcttggtc 454 ||||||||||||||||||||| Sbjct: 11332 tctttgacttccagcttggtc 11352
>gb|AC131706.4| Mus musculus BAC clone RP24-136E12 from chromosome 7, complete sequence Length = 127581 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 434 tctttgacttccagcttggtc 454 ||||||||||||||||||||| Sbjct: 117932 tctttgacttccagcttggtc 117952 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 434 tctttgacttccagcttggtc 454 ||||||||||||||||||||| Sbjct: 95665 tctttgacttccagcttggtc 95685
>emb|CR450771.10| Zebrafish DNA sequence from clone CH211-152D1 in linkage group 2, complete sequence Length = 152893 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 tgaaatgaaaatgctgaattg 97 ||||||||||||||||||||| Sbjct: 132225 tgaaatgaaaatgctgaattg 132245
>ref|XM_504490.1| Yarrowia lipolytica CLIB122, YALI0E27962g predicted mRNA Length = 2664 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 485 cggttgagaaactccggtcggaagt 509 |||||||||||||| |||||||||| Sbjct: 2276 cggttgagaaactcgggtcggaagt 2252
>gb|AE004483.1| Pseudomonas aeruginosa PAO1, section 44 of 529 of the complete genome Length = 10202 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 463 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaa 507 ||||||||||| |||||||| |||||||| || ||||| ||||| Sbjct: 9696 gaagacgatcacctcgtcgaggcggttgaggaattccgggcggaa 9652
>ref|XM_218523.3| PREDICTED: Rattus norvegicus CD22 antigen (predicted) (Cd22_predicted), mRNA Length = 3042 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 219 tcacagagtcgccctccttgacctc 243 ||||||||| ||||||||||||||| Sbjct: 1273 tcacagagttgccctccttgacctc 1249
>emb|BX004962.10| Zebrafish DNA sequence from clone CH211-93N23, complete sequence Length = 170736 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 gtgtattactgtatattttat 22 ||||||||||||||||||||| Sbjct: 331 gtgtattactgtatattttat 351
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 485 cggttgagaaactccggtcggaagt 509 |||||||||||||| |||||||||| Sbjct: 3309197 cggttgagaaactcgggtcggaagt 3309221
>ref|NM_114746.2| Arabidopsis thaliana ATCLPC; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding AT3G48870 (ATCLPC) mRNA, complete cds Length = 3130 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 431 atctctttgacttccagcttggtcagctgtctgaagacgatcat 474 ||||| |||||||||||||| || | ||||||||| || ||||| Sbjct: 2643 atctccttgacttccagctttgttaactgtctgaaaacaatcat 2600
>gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome 12, complete sequence Length = 239046 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ctttcccctccgagtccaca 211 |||||||||||||||||||| Sbjct: 31244 ctttcccctccgagtccaca 31225
>gb|AC150386.2| Branchiostoma floridae clone CH302-103G16, complete sequence Length = 195926 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tccttgaacttctccgtcac 369 |||||||||||||||||||| Sbjct: 2257 tccttgaacttctccgtcac 2276
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 7.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 463 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaagtactgcttca 518 ||||||||| || || || ||||||||||| || || || |||||||| ||||||| Sbjct: 1102711 gaagacgataatctcatctagacggttgaggaattcaggacggaagtattgcttca 1102766
>gb|AC153919.8| Mus musculus 10 BAC RP23-91E23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 264561 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 cctccttgacctccccgccc 250 |||||||||||||||||||| Sbjct: 262803 cctccttgacctccccgccc 262784
>emb|Z71261.1|CEF21C3 Caenorhabditis elegans Cosmid F21C3, complete sequence Length = 26195 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tatacagttacaattatata 39 |||||||||||||||||||| Sbjct: 7289 tatacagttacaattatata 7308
>gb|AC159474.9| Mus musculus 10 BAC RP23-28P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 230201 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 cctccttgacctccccgccc 250 |||||||||||||||||||| Sbjct: 181951 cctccttgacctccccgccc 181932
>emb|AL596451.4| Human DNA sequence from clone RP11-75C9 on chromosome 9 Contains 2 novel genes, complete sequence Length = 130513 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gaatgaaatgaaaatgctga 93 |||||||||||||||||||| Sbjct: 96698 gaatgaaatgaaaatgctga 96717
>emb|AL121905.23|HSDJ534B8 Human DNA sequence from clone RP4-534B8 on chromosome 20 Contains the 3' end of the PTPRA gene for protein tyrosine phosphatase receptor type A, the GNRH2 gene for gonadotropin-releasing hormone 2, a novel gene and two CpG islands, complete sequence Length = 126679 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 cctcatgatcgccctcctca 302 |||||||||||||||||||| Sbjct: 4562 cctcatgatcgccctcctca 4581
>emb|AL009177.1|HS365E2 Human DNA sequence from clone RP3-365E2 on chromosome 6p22.3-24.1, complete sequence Length = 137730 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 acaatctatctatataccaactac 129 |||||||| ||||||||||||||| Sbjct: 99131 acaatctaactatataccaactac 99154
>emb|CR381700.6| Zebrafish DNA sequence from clone CH211-198F4 in linkage group 14, complete sequence Length = 203630 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tactgtatattttatacagt 27 |||||||||||||||||||| Sbjct: 196179 tactgtatattttatacagt 196198
>emb|BX251412.1| Tropheryma whipplei TW08/27, complete genome; segment 3/3 Length = 302938 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 cctcctcaatggccgcgctccgta 318 |||||||||||||||||| ||||| Sbjct: 231785 cctcctcaatggccgcgcgccgta 231808
>emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome 3, BAC clone T21J18 Length = 82912 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 431 atctctttgacttccagcttggtcagctgtctgaagacgatcat 474 ||||| |||||||||||||| || | ||||||||| || ||||| Sbjct: 71124 atctccttgacttccagctttgttaactgtctgaaaacaatcat 71167
>gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, complete sequence Length = 170969 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 tctatctatataccaactacttat 133 ||||||||||||| |||||||||| Sbjct: 105274 tctatctatatactaactacttat 105251
>emb|BX005068.13| Zebrafish DNA sequence from clone DKEY-40H17 in linkage group 1, complete sequence Length = 215007 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tattactgtatattttatac 24 |||||||||||||||||||| Sbjct: 176090 tattactgtatattttatac 176071
>gb|AC108931.4| Homo sapiens BAC clone RP11-284E20 from 4, complete sequence Length = 114175 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 actgtatattttatacagtt 28 |||||||||||||||||||| Sbjct: 35213 actgtatattttatacagtt 35194
>gb|AC112205.2| Homo sapiens chromosome 5 clone RP11-80G7, complete sequence Length = 137376 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tacctatgaagagatgtgct 72 |||||||||||||||||||| Sbjct: 65211 tacctatgaagagatgtgct 65192
>gb|AC155937.4| Mus musculus 10 BAC RP24-535C14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 152468 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 cctccttgacctccccgccc 250 |||||||||||||||||||| Sbjct: 118716 cctccttgacctccccgccc 118735
>gb|AY056787.1| Arabidopsis thaliana AT3g48870/T21J18_140 mRNA, complete cds Length = 3105 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 431 atctctttgacttccagcttggtcagctgtctgaagacgatcat 474 ||||| |||||||||||||| || | ||||||||| || ||||| Sbjct: 2644 atctccttgacttccagctttgttaactgtctgaaaacaatcat 2601
>gb|AC092217.1|AC092217 Drosophila melanogaster, chromosome 2L, region 24D-24E, BAC clone BACR11D14, complete sequence Length = 158347 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gctggaatgaaatgaaaatg 89 |||||||||||||||||||| Sbjct: 127206 gctggaatgaaatgaaaatg 127225
>ref|NM_059653.3| Caenorhabditis elegans TWiK family of potassium channels family member (twk-1) (twk-1) mRNA, complete cds Length = 1440 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tatacagttacaattatata 39 |||||||||||||||||||| Sbjct: 674 tatacagttacaattatata 655
>gb|AC008723.8|AC008723 Homo sapiens chromosome 5 clone CTB-95B16, complete sequence Length = 109616 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tacctatgaagagatgtgct 72 |||||||||||||||||||| Sbjct: 95711 tacctatgaagagatgtgct 95692
>gb|AC105054.6| Homo sapiens BAC clone RP11-722I12 from 2, complete sequence Length = 203061 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tgtgctggaatgaaatgaaa 86 |||||||||||||||||||| Sbjct: 67326 tgtgctggaatgaaatgaaa 67307
>gb|AC079954.18| Homo sapiens 12 BAC RP11-179A1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158785 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 tattactgtatattttatac 24 |||||||||||||||||||| Sbjct: 134513 tattactgtatattttatac 134532
>gb|AC008062.3| Homo sapiens BAC clone RP11-68L6 from 2, complete sequence Length = 131250 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ggaatgaaatgaaaatgctg 92 |||||||||||||||||||| Sbjct: 106572 ggaatgaaatgaaaatgctg 106553
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.9 Identities = 47/56 (83%) Strand = Plus / Minus Query: 463 gaagacgatcatttcgtcgagacggttgagaaactccggtcggaagtactgcttca 518 ||||||||||| ||||||| |||||||| ||||| || ||||||| || ||||| Sbjct: 435610 gaagacgatcacgtcgtcgatgcggttgaggaactcgggccggaagtgcttcttca 435555
>dbj|AB022324.1| Arabidopsis thaliana mRNA for AtClpC, complete cds Length = 3090 Score = 40.1 bits (20), Expect = 7.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 431 atctctttgacttccagcttggtcagctgtctgaagacgatcat 474 ||||| |||||||||||||| || | ||||||||| || ||||| Sbjct: 2628 atctccttgacttccagctttgttaactgtctgaaaacaatcat 2585
>gb|AC147906.2| Xenopus tropicalis clone CH216-71H3, complete sequence Length = 147503 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gtattactgtatattttata 23 |||||||||||||||||||| Sbjct: 80011 gtattactgtatattttata 79992
>gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome Length = 927303 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 cctcctcaatggccgcgctccgta 318 |||||||||||||||||| ||||| Sbjct: 856097 cctcctcaatggccgcgcgccgta 856120
>emb|BX548009.4| Zebrafish DNA sequence from clone CH211-237K17 in linkage group 3, complete sequence Length = 128639 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 gaatgaaatgaaaatgctgaattg 97 ||||||||||||| |||||||||| Sbjct: 36109 gaatgaaatgaaagtgctgaattg 36132
>emb|CR391939.4| Zebrafish DNA sequence from clone CH211-269G3 in linkage group 18, complete sequence Length = 83565 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gtattactgtatattttata 23 |||||||||||||||||||| Sbjct: 44066 gtattactgtatattttata 44047
>gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14 of 83 of the complete sequence Length = 290034 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gctggaatgaaatgaaaatg 89 |||||||||||||||||||| Sbjct: 124401 gctggaatgaaatgaaaatg 124382
>gb|DQ332898.1| Synthetic construct Saccharomyces cerevisiae clone FLH113431.01X MSR1 gene, complete sequence Length = 1932 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 aaatgctgaattggctgctt 104 |||||||||||||||||||| Sbjct: 767 aaatgctgaattggctgctt 748
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 462 tgaagacgatcatttcgtcgagacggttgagaaactccgg 501 |||||||||||| |||||||| ||||| || |||||||| Sbjct: 1656830 tgaagacgatcacgtcgtcgagccggttcaggaactccgg 1656869
>gb|AF033001.1|AF033001 Cerebratulus lacteus neural globin gene, complete cds Length = 4019 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 cgcccaaaatcttctccgcg 265 |||||||||||||||||||| Sbjct: 236 cgcccaaaatcttctccgcg 217
>gb|AC164879.2| Mus musculus BAC clone RP23-354H10 from chromosome 14, complete sequence Length = 210602 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 cttaacaatctatctatata 121 |||||||||||||||||||| Sbjct: 111330 cttaacaatctatctatata 111349
>gb|AC004371.1|AC004371 Drosophila melanogaster DNA sequence (P1 DS06482 (D76)), complete sequence Length = 87124 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gctggaatgaaatgaaaatg 89 |||||||||||||||||||| Sbjct: 34631 gctggaatgaaatgaaaatg 34612
>gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, complete sequence Length = 87978 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 tctatctatataccaactacttat 133 ||||||||||||| |||||||||| Sbjct: 4425 tctatctatatactaactacttat 4402
>gb|U00060.1|YSCH9332 Saccharomyces cerevisiae chromosome VIII cosmid 9332 Length = 36176 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aaatgctgaattggctgctt 104 |||||||||||||||||||| Sbjct: 8131 aaatgctgaattggctgctt 8150
>gb|L39019.1|YSCMSR1A Saccharomyces cerevisiae nuclear-encoded mitochondrial arginyl-tRNA synthetase (MSR1) gene, complete cds Length = 2070 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 aaatgctgaattggctgctt 104 |||||||||||||||||||| Sbjct: 896 aaatgctgaattggctgctt 877
>gb|AC151981.3| Mus musculus BAC clone RP24-66K3 from chromosome 12, complete sequence Length = 185710 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ctttcccctccgagtccaca 211 |||||||||||||||||||| Sbjct: 120624 ctttcccctccgagtccaca 120605 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,125,071 Number of Sequences: 3902068 Number of extensions: 5125071 Number of successful extensions: 106510 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105857 Number of HSP's gapped (non-prelim): 650 length of query: 581 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 558 effective length of database: 17,143,297,704 effective search space: 9565960118832 effective search space used: 9565960118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
