ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25a15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1C1QT8_HUMAN (P60827) Complement C1q tumor necrosis factor-relate... 30 2.0
2SP2G_CLOAB (Q45832) Probable sporulation sigma-E factor processi... 28 4.5
3ESR2_SPAAU (Q9W6M2) Estrogen receptor beta (ER-beta) 28 5.9

>C1QT8_HUMAN (P60827) Complement C1q tumor necrosis factor-related protein 8|
           precursor
          Length = 262

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 287 WPARPRGPGIRGATRCWLPGPVRRLPEPDV 198
           WP  PR P +      W PGP  R+ + D+
Sbjct: 18  WPGLPRRPCVHCCRPAWPPGPYARVSDRDL 47



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>SP2G_CLOAB (Q45832) Probable sporulation sigma-E factor processing peptidase|
           (EC 3.4.23.-)
          Length = 266

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 148 KAFVAFSKPDLTFLSGSNYFSVSCTIVVRAFHLLVAGLCFFIFLVXT 8
           K   AF    + F   S  F++    V+  + ++ AGLCFFI L  T
Sbjct: 64  KIIAAFLMIIICFRKKSLRFNIKALAVLIMYSMVTAGLCFFIELNNT 110



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>ESR2_SPAAU (Q9W6M2) Estrogen receptor beta (ER-beta)|
          Length = 559

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -1

Query: 284 PARPRGPGIRGATRCWLPGPVRRLPEP 204
           PARP  PG  G T  W P       EP
Sbjct: 532 PARPHSPGTSGPTNTWTPSCTGGRGEP 558


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,925,251
Number of Sequences: 219361
Number of extensions: 600212
Number of successful extensions: 1799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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