ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KRA47_HUMAN (Q9BYR0) Keratin-associated protein 4-7 (Keratin-ass... 31 2.4
2GP157_HUMAN (Q5UAW9) Probable G-protein coupled receptor 157 31 2.4
3AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen r... 30 4.0
4LAMB3_HUMAN (Q13751) Laminin beta-3 chain precursor (Laminin 5 b... 30 6.9
5KR414_HUMAN (Q9BYQ6) Keratin-associated protein 4-14 (Keratin-as... 30 6.9
6VIPR2_RAT (P35000) Vasoactive intestinal polypeptide receptor 2 ... 30 6.9
7HUNB_DROVI (P13361) Protein hunchback 29 9.0

>KRA47_HUMAN (Q9BYR0) Keratin-associated protein 4-7 (Keratin-associated protein|
           4.7) (Ultrahigh sulfur keratin-associated protein 4.7)
          Length = 210

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = +3

Query: 219 SIAIDPGCGHSLLHAISLINIASCTRCGVRRFFIRLICCCSS*YLPRCGESMRFTPSC-- 392
           S+  D GCG  L            T C  R    R  CC SS   P+C +S+   P+C  
Sbjct: 8   SVCSDQGCGQVLCQETCCRPSCCQTTC-CRTTCYRPSCCVSSCCRPQCCQSVCCQPTCCR 66

Query: 393 -PCSKMQFSHP 422
             C +    HP
Sbjct: 67  PSCCETTCCHP 77



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>GP157_HUMAN (Q5UAW9) Probable G-protein coupled receptor 157|
          Length = 335

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 195 GGRCLRLPSIAIDPGCGHSLLHAISLINIASCTRCGVRRFFIRLICCCSS 344
           G   ++ P + +  G G++     + I    CTR    R F    CCCSS
Sbjct: 251 GSPAVQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRLFSLCCCCCSS 300



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>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)|
          Length = 860

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 364 ASR*GSLRHAPAAKCNFRIQSIHSPASMNG 453
           +SR  S++HAP+   + R+ +  SP SMNG
Sbjct: 726 SSRKNSIQHAPSTSISSRMNTSESPPSMNG 755



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>LAMB3_HUMAN (Q13751) Laminin beta-3 chain precursor (Laminin 5 beta 3) (Laminin|
           B1k chain) (Kalinin B1 chain)
          Length = 1172

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = +3

Query: 192 EGGRCLRLPSIAIDPGCGHSLLHAISLINIASCTRCGVRRFFIRLICCCSS*YLPRCGES 371
           E GRCL LP++ + P C     +   L +   C  C          C   +   P+C + 
Sbjct: 447 ESGRCLCLPNV-VGPKCDQCAPYHWKLASGQGCEPCA---------CDPHNSLSPQCNQ- 495

Query: 372 MRFTPSCPC 398
             FT  CPC
Sbjct: 496 --FTGQCPC 502



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>KR414_HUMAN (Q9BYQ6) Keratin-associated protein 4-14 (Keratin-associated|
           protein 4.14) (Ultrahigh sulfur keratin-associated
           protein 4.14)
          Length = 195

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 219 SIAIDPGCGHSLLHAISLINIASCTRCGVRRFFIRLICCCSS*YLPRCGESMRFTPSC 392
           S+    GCG  L    +    + C     R  + R  CC SS   P+C +S+   P+C
Sbjct: 8   SVCSHQGCGQDLCQE-TCCRPSCCETTCCRTTYCRPSCCVSSCCRPQCCQSVCCQPTC 64



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>VIPR2_RAT (P35000) Vasoactive intestinal polypeptide receptor 2 precursor|
           (VIP-R-2) (Pituitary adenylate cyclase-activating
           polypeptide type III receptor) (PACAP type III receptor)
           (PACAP-R-3)
          Length = 437

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 202 LPPSLVFYYYLLLSANQ*AVCLWSWVWTGMSTQ 104
           LPPS  F  YLL+     +VC+ +W+ T +S +
Sbjct: 234 LPPSRCFLAYLLIGWGIPSVCIGAWIATRLSLE 266



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>HUNB_DROVI (P13361) Protein hunchback|
          Length = 816

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = +2

Query: 95  QHLLGGHSSPNPTPQAHCLLIC*QQQIIVKDKGGREVPPFAIDSNRSRLWSQPSSCHQLN 274
           QH  GG+  P+P P            I   DK     PP  +   +S   SQ SS     
Sbjct: 163 QHYYGGNMRPSPQPTPTAAPTAVAAAIQTGDKLQALTPPMDVTPPKSPAKSQQSSAEPEK 222

Query: 275 QHRLL 289
           +H L+
Sbjct: 223 EHDLM 227


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,749,494
Number of Sequences: 219361
Number of extensions: 1535689
Number of successful extensions: 3250
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3246
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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