Clone Name | rbasd24l05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | AROK_ARCFU (O29730) Shikimate kinase (EC 2.7.1.71) (SK) | 31 | 1.8 | 2 | CATA2_MAIZE (P12365) Catalase isozyme 2 (EC 1.11.1.6) | 30 | 2.3 | 3 | TRXM3_ARATH (Q9SEU7) Thioredoxin M-type 3, chloroplast precursor... | 30 | 3.1 | 4 | AKR1_ASPFU (Q4X251) Palmitoyltransferase akr1 (EC 2.3.1.-) (Anky... | 29 | 6.8 | 5 | VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-depen... | 28 | 8.9 |
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>AROK_ARCFU (O29730) Shikimate kinase (EC 2.7.1.71) (SK)| Length = 280 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/73 (26%), Positives = 34/73 (46%) Frame = +1 Query: 223 TRLTGTPLGIGLAIILFIHEVSFTSAADEARXAVDGILRRTTLEEACGCTHKEVLQLMXV 402 T L P GIG A + +H + +DE + V+G+ RR+ + E + +++ Sbjct: 11 TVLNALPTGIGSAFGIEMHTIVKLRPSDELKVFVNGVERRSIVAERILNSMDVTAEVIVE 70 Query: 403 EALAGGHHIDDSS 441 + GG + SS Sbjct: 71 SEIPGGSGLGSSS 83
>CATA2_MAIZE (P12365) Catalase isozyme 2 (EC 1.11.1.6)| Length = 491 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = -1 Query: 396 HQLQNLLVSAPACLFQCGSSQDAVDGXTSFIRRRGEGDLMDEEYDSESNA*RSP 235 H+L + PA +C + DG +F+ R E D YD+ NA R P Sbjct: 353 HRLGPNYLLLPANAPKCAHHNNHYDGSMNFMHRHEEVDYFPSRYDAVRNAPRYP 406
>TRXM3_ARATH (Q9SEU7) Thioredoxin M-type 3, chloroplast precursor (TRX-M3)| Length = 173 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -2 Query: 356 SSSVVRRRMPSTAXRASSAAEVKETSWMKSMIASPMP 246 SSS R R+ R S AAEV + SW S++ S P Sbjct: 50 SSSASRLRLSPLCVRDSRAAEVTQRSWEDSVLKSETP 86
>AKR1_ASPFU (Q4X251) Palmitoyltransferase akr1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein akr1) Length = 738 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = -2 Query: 278 WMKSMIASPMPRGVPVSLVILESAVVLFXH--FRHHK*IVKPHSHACHVVVLKPCHFAL 108 W+ + + + R + ++ LE ++LF +R+ + P HAC+++ + C F L Sbjct: 487 WIDNCVGANNLRHFVLYIICLEIGIILFLQLTYRYINILPAPVEHACNIINEELCGFVL 545
>VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 604 Score = 28.5 bits (62), Expect = 8.9 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Frame = -1 Query: 432 IDVVAAGECLHXHQLQNLLVSAPACLFQCGSSQDAV---DGXTSFIRRRGEGDLMDEEYD 262 IDV A L+ H C + G + D + F+R G DL+DEE D Sbjct: 523 IDVQAEERYLYLHSRVQTFRFEQPCTDESGEQPFTITDADWKSFFVRLWGRLDLVDEEED 582 Query: 261 SESN 250 SE + Sbjct: 583 SEED 586 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,526,577 Number of Sequences: 219361 Number of extensions: 1166490 Number of successful extensions: 3090 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3090 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)