ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AROK_ARCFU (O29730) Shikimate kinase (EC 2.7.1.71) (SK) 31 1.8
2CATA2_MAIZE (P12365) Catalase isozyme 2 (EC 1.11.1.6) 30 2.3
3TRXM3_ARATH (Q9SEU7) Thioredoxin M-type 3, chloroplast precursor... 30 3.1
4AKR1_ASPFU (Q4X251) Palmitoyltransferase akr1 (EC 2.3.1.-) (Anky... 29 6.8
5VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-depen... 28 8.9

>AROK_ARCFU (O29730) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 280

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +1

Query: 223 TRLTGTPLGIGLAIILFIHEVSFTSAADEARXAVDGILRRTTLEEACGCTHKEVLQLMXV 402
           T L   P GIG A  + +H +     +DE +  V+G+ RR+ + E    +     +++  
Sbjct: 11  TVLNALPTGIGSAFGIEMHTIVKLRPSDELKVFVNGVERRSIVAERILNSMDVTAEVIVE 70

Query: 403 EALAGGHHIDDSS 441
             + GG  +  SS
Sbjct: 71  SEIPGGSGLGSSS 83



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>CATA2_MAIZE (P12365) Catalase isozyme 2 (EC 1.11.1.6)|
          Length = 491

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 396 HQLQNLLVSAPACLFQCGSSQDAVDGXTSFIRRRGEGDLMDEEYDSESNA*RSP 235
           H+L    +  PA   +C    +  DG  +F+ R  E D     YD+  NA R P
Sbjct: 353 HRLGPNYLLLPANAPKCAHHNNHYDGSMNFMHRHEEVDYFPSRYDAVRNAPRYP 406



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>TRXM3_ARATH (Q9SEU7) Thioredoxin M-type 3, chloroplast precursor (TRX-M3)|
          Length = 173

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 356 SSSVVRRRMPSTAXRASSAAEVKETSWMKSMIASPMP 246
           SSS  R R+     R S AAEV + SW  S++ S  P
Sbjct: 50  SSSASRLRLSPLCVRDSRAAEVTQRSWEDSVLKSETP 86



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>AKR1_ASPFU (Q4X251) Palmitoyltransferase akr1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein akr1)
          Length = 738

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 278 WMKSMIASPMPRGVPVSLVILESAVVLFXH--FRHHK*IVKPHSHACHVVVLKPCHFAL 108
           W+ + + +   R   + ++ LE  ++LF    +R+   +  P  HAC+++  + C F L
Sbjct: 487 WIDNCVGANNLRHFVLYIICLEIGIILFLQLTYRYINILPAPVEHACNIINEELCGFVL 545



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>VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 604

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = -1

Query: 432 IDVVAAGECLHXHQLQNLLVSAPACLFQCGSSQDAV---DGXTSFIRRRGEGDLMDEEYD 262
           IDV A    L+ H           C  + G     +   D  + F+R  G  DL+DEE D
Sbjct: 523 IDVQAEERYLYLHSRVQTFRFEQPCTDESGEQPFTITDADWKSFFVRLWGRLDLVDEEED 582

Query: 261 SESN 250
           SE +
Sbjct: 583 SEED 586


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,526,577
Number of Sequences: 219361
Number of extensions: 1166490
Number of successful extensions: 3090
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3090
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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