Clone Name | rbasd25a04 |
---|---|
Clone Library Name | barley_pub |
>SERB_ARATH (O82796) Phosphoserine phosphatase, chloroplast precursor (EC| 3.1.3.3) (PSP) (O-phosphoserine phosphohydrolase) (PSPase) Length = 295 Score = 171 bits (433), Expect = 1e-42 Identities = 85/113 (75%), Positives = 94/113 (83%) Frame = -3 Query: 587 RQMIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYK 408 RQMI VA LGIP ENI AN LLFG SGE+ GFD EPTSRSGGKA AVQQIR+ R YK Sbjct: 182 RQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPTSRSGGKAKAVQQIRKGRLYK 241 Query: 407 TLVMIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISEL 249 T+ MIGDGATDLEAR+PGGADLFICYAGVQ+REAVAA ADW +F+F+ LI+ L Sbjct: 242 TMAMIGDGATDLEARKPGGADLFICYAGVQLREAVAANADWLIFKFESLINSL 294
>SERB_RAT (Q5M819) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)| (O-phosphoserine phosphohydrolase) (PSPase) Length = 225 Score = 107 bits (266), Expect = 3e-23 Identities = 54/115 (46%), Positives = 76/115 (66%) Frame = -3 Query: 587 RQMIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYK 408 R ++E VA +L IPT N+ ANRL F +GEYAGFD T+PT+ SGGK + +++ +K Sbjct: 113 RSIVEHVAAKLNIPTTNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIGFLKEKFHFK 172 Query: 407 TLVMIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISELPQ 243 ++MIGDGATD+EA P AD FI + G +R+ V A W + +F EL+ EL + Sbjct: 173 KIIMIGDGATDMEACPP--ADAFIGFGGNVIRQQVKDNAKWYITDFVELLGELEE 225
>SERB_PONPY (Q5RB83) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)| (O-phosphoserine phosphohydrolase) (PSPase) Length = 225 Score = 106 bits (265), Expect = 4e-23 Identities = 53/115 (46%), Positives = 76/115 (66%) Frame = -3 Query: 587 RQMIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYK 408 R ++E VA +L IP N+ ANRL F +GEYAGFD T+PT+ SGGK ++ +++ +K Sbjct: 113 RSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFK 172 Query: 407 TLVMIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISELPQ 243 ++MIGDGATD+EA P AD FI + G +R+ V A W + +F EL+ EL + Sbjct: 173 KIIMIGDGATDMEACPP--ADAFIGFGGNVIRQQVKDNAKWYITDFVELLGELEE 225
>SERB_HUMAN (P78330) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)| (O-phosphoserine phosphohydrolase) (PSPase) (L-3-phosphoserine phosphatase) Length = 225 Score = 106 bits (265), Expect = 4e-23 Identities = 53/115 (46%), Positives = 76/115 (66%) Frame = -3 Query: 587 RQMIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYK 408 R ++E VA +L IP N+ ANRL F +GEYAGFD T+PT+ SGGK ++ +++ +K Sbjct: 113 RSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFK 172 Query: 407 TLVMIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISELPQ 243 ++MIGDGATD+EA P AD FI + G +R+ V A W + +F EL+ EL + Sbjct: 173 KIIMIGDGATDMEACPP--ADAFIGFGGNVIRQQVKDNAKWYITDFVELLGELEE 225
>SERB_MOUSE (Q99LS3) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)| (O-phosphoserine phosphohydrolase) (PSPase) Length = 225 Score = 105 bits (263), Expect = 7e-23 Identities = 53/115 (46%), Positives = 76/115 (66%) Frame = -3 Query: 587 RQMIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYK 408 R ++E VA +L IPT N+ ANRL F +GEYAGFD +PT+ SGGK ++ +++ +K Sbjct: 113 RSIVEHVAAKLNIPTTNVFANRLKFYFNGEYAGFDEMQPTAESGGKGKVIRFLKEKFHFK 172 Query: 407 TLVMIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISELPQ 243 ++MIGDGATD+EA P AD FI + G +R+ V A W + +F EL+ EL + Sbjct: 173 KIIMIGDGATDMEACPP--ADAFIGFGGNVIRQQVKDNAKWYITDFVELLGELEE 225
>SERB_DROME (Q9VSY6) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)| (O-phosphoserine phosphohydrolase) (PSPase) Length = 270 Score = 94.7 bits (234), Expect = 2e-19 Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 1/111 (0%) Frame = -3 Query: 581 MIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYKTL 402 +I VA ELGIP +N+ AN++LF GEY FD +PTSRSGGKA A+ IR++ +L Sbjct: 162 LIAPVANELGIPLKNVYANKMLFDYLGEYDSFDINQPTSRSGGKAEAIALIRKENSDDSL 221 Query: 401 V-MIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISE 252 + MIGDGATDLEA P A+ FI + G +R V +A + V +F++L+ + Sbjct: 222 ITMIGDGATDLEAVPP--ANYFIGFGGNVVRPEVYRRAQYYVTDFEQLMGQ 270
>GTR3_CANFA (P47842) Solute carrier family 2, facilitated glucose transporter| member 3 (Glucose transporter type 3, brain) Length = 495 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%) Frame = -3 Query: 116 CFSWSSNLTVSFLKP------GGYVFFSFAGLVVMXLI 21 C +W+SN V L P G YVF F G +++ L+ Sbjct: 407 CSNWTSNFLVGLLFPSAAFYLGAYVFIIFTGFLIVFLV 444
>YTMN_BACSU (O34900) Probable amino-acid ABC transporter ATP-binding protein| ytmN Length = 259 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -1 Query: 292 LTGPSLNFKN*FLNCRSLIPCSDSEPISVHTVKDNCMFSS 173 + GPS + K FL C +L+ D IS+H NC F S Sbjct: 32 IIGPSGSGKTTFLRCLNLLERPDEGIISIHDKVINCRFPS 71
>MLX_HUMAN (Q9UH92) Max-like protein X (Max-like bHLHZip protein) (BigMax| protein) (Protein Mlx) (Transcription factor-like protein 4) Length = 298 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/43 (25%), Positives = 24/43 (55%) Frame = +1 Query: 106 QLKHHLIKGMMEM*NKVMQLNTGLRTYNYLSRCEH*WVQNHCK 234 Q+K ++ +G+M+ + + + ++ LS C W++ HCK Sbjct: 236 QVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHCK 278
>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1229 Score = 29.3 bits (64), Expect = 8.8 Identities = 22/75 (29%), Positives = 32/75 (42%) Frame = +1 Query: 280 TVQSALAATASLIWTPA*QMNKSAPPGCRASRSVAPSPIITSVL*PRSCLICCTATALPP 459 T S+ AA A+ +P + +APP P P +T+ S L T+T P Sbjct: 688 TSPSSPAAPAASSASPMFKPIFTAPPKSEKEGPTPPGPSVTATAPSSSSLPTTTSTTAPT 747 Query: 460 LREVGSVVSNPAYSP 504 + V S + PA P Sbjct: 748 FQPVFSSMGPPASVP 762 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,737,189 Number of Sequences: 219361 Number of extensions: 1770787 Number of successful extensions: 4308 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4307 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)