ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SERB_ARATH (O82796) Phosphoserine phosphatase, chloroplast precu... 171 1e-42
2SERB_RAT (Q5M819) Phosphoserine phosphatase (EC 3.1.3.3) (PSP) (... 107 3e-23
3SERB_PONPY (Q5RB83) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)... 106 4e-23
4SERB_HUMAN (P78330) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)... 106 4e-23
5SERB_MOUSE (Q99LS3) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)... 105 7e-23
6SERB_DROME (Q9VSY6) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)... 95 2e-19
7GTR3_CANFA (P47842) Solute carrier family 2, facilitated glucose... 31 3.0
8YTMN_BACSU (O34900) Probable amino-acid ABC transporter ATP-bind... 30 4.0
9MLX_HUMAN (Q9UH92) Max-like protein X (Max-like bHLHZip protein)... 30 5.2
10PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM ... 29 8.8

>SERB_ARATH (O82796) Phosphoserine phosphatase, chloroplast precursor (EC|
           3.1.3.3) (PSP) (O-phosphoserine phosphohydrolase)
           (PSPase)
          Length = 295

 Score =  171 bits (433), Expect = 1e-42
 Identities = 85/113 (75%), Positives = 94/113 (83%)
 Frame = -3

Query: 587 RQMIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYK 408
           RQMI  VA  LGIP ENI AN LLFG SGE+ GFD  EPTSRSGGKA AVQQIR+ R YK
Sbjct: 182 RQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPTSRSGGKAKAVQQIRKGRLYK 241

Query: 407 TLVMIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISEL 249
           T+ MIGDGATDLEAR+PGGADLFICYAGVQ+REAVAA ADW +F+F+ LI+ L
Sbjct: 242 TMAMIGDGATDLEARKPGGADLFICYAGVQLREAVAANADWLIFKFESLINSL 294



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>SERB_RAT (Q5M819) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)|
           (O-phosphoserine phosphohydrolase) (PSPase)
          Length = 225

 Score =  107 bits (266), Expect = 3e-23
 Identities = 54/115 (46%), Positives = 76/115 (66%)
 Frame = -3

Query: 587 RQMIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYK 408
           R ++E VA +L IPT N+ ANRL F  +GEYAGFD T+PT+ SGGK   +  +++   +K
Sbjct: 113 RSIVEHVAAKLNIPTTNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIGFLKEKFHFK 172

Query: 407 TLVMIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISELPQ 243
            ++MIGDGATD+EA  P  AD FI + G  +R+ V   A W + +F EL+ EL +
Sbjct: 173 KIIMIGDGATDMEACPP--ADAFIGFGGNVIRQQVKDNAKWYITDFVELLGELEE 225



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>SERB_PONPY (Q5RB83) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)|
           (O-phosphoserine phosphohydrolase) (PSPase)
          Length = 225

 Score =  106 bits (265), Expect = 4e-23
 Identities = 53/115 (46%), Positives = 76/115 (66%)
 Frame = -3

Query: 587 RQMIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYK 408
           R ++E VA +L IP  N+ ANRL F  +GEYAGFD T+PT+ SGGK   ++ +++   +K
Sbjct: 113 RSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFK 172

Query: 407 TLVMIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISELPQ 243
            ++MIGDGATD+EA  P  AD FI + G  +R+ V   A W + +F EL+ EL +
Sbjct: 173 KIIMIGDGATDMEACPP--ADAFIGFGGNVIRQQVKDNAKWYITDFVELLGELEE 225



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>SERB_HUMAN (P78330) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)|
           (O-phosphoserine phosphohydrolase) (PSPase)
           (L-3-phosphoserine phosphatase)
          Length = 225

 Score =  106 bits (265), Expect = 4e-23
 Identities = 53/115 (46%), Positives = 76/115 (66%)
 Frame = -3

Query: 587 RQMIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYK 408
           R ++E VA +L IP  N+ ANRL F  +GEYAGFD T+PT+ SGGK   ++ +++   +K
Sbjct: 113 RSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFK 172

Query: 407 TLVMIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISELPQ 243
            ++MIGDGATD+EA  P  AD FI + G  +R+ V   A W + +F EL+ EL +
Sbjct: 173 KIIMIGDGATDMEACPP--ADAFIGFGGNVIRQQVKDNAKWYITDFVELLGELEE 225



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>SERB_MOUSE (Q99LS3) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)|
           (O-phosphoserine phosphohydrolase) (PSPase)
          Length = 225

 Score =  105 bits (263), Expect = 7e-23
 Identities = 53/115 (46%), Positives = 76/115 (66%)
 Frame = -3

Query: 587 RQMIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYK 408
           R ++E VA +L IPT N+ ANRL F  +GEYAGFD  +PT+ SGGK   ++ +++   +K
Sbjct: 113 RSIVEHVAAKLNIPTTNVFANRLKFYFNGEYAGFDEMQPTAESGGKGKVIRFLKEKFHFK 172

Query: 407 TLVMIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISELPQ 243
            ++MIGDGATD+EA  P  AD FI + G  +R+ V   A W + +F EL+ EL +
Sbjct: 173 KIIMIGDGATDMEACPP--ADAFIGFGGNVIRQQVKDNAKWYITDFVELLGELEE 225



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>SERB_DROME (Q9VSY6) Phosphoserine phosphatase (EC 3.1.3.3) (PSP)|
           (O-phosphoserine phosphohydrolase) (PSPase)
          Length = 270

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
 Frame = -3

Query: 581 MIEXVAFELGIPTENIIANRLLFGTSGEYAGFDTTEPTSRSGGKAVAVQQIRQDRGYKTL 402
           +I  VA ELGIP +N+ AN++LF   GEY  FD  +PTSRSGGKA A+  IR++    +L
Sbjct: 162 LIAPVANELGIPLKNVYANKMLFDYLGEYDSFDINQPTSRSGGKAEAIALIRKENSDDSL 221

Query: 401 V-MIGDGATDLEARQPGGADLFICYAGVQMREAVAAKADWTVFEFQELISE 252
           + MIGDGATDLEA  P  A+ FI + G  +R  V  +A + V +F++L+ +
Sbjct: 222 ITMIGDGATDLEAVPP--ANYFIGFGGNVVRPEVYRRAQYYVTDFEQLMGQ 270



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>GTR3_CANFA (P47842) Solute carrier family 2, facilitated glucose transporter|
           member 3 (Glucose transporter type 3, brain)
          Length = 495

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
 Frame = -3

Query: 116 CFSWSSNLTVSFLKP------GGYVFFSFAGLVVMXLI 21
           C +W+SN  V  L P      G YVF  F G +++ L+
Sbjct: 407 CSNWTSNFLVGLLFPSAAFYLGAYVFIIFTGFLIVFLV 444



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>YTMN_BACSU (O34900) Probable amino-acid ABC transporter ATP-binding protein|
           ytmN
          Length = 259

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 292 LTGPSLNFKN*FLNCRSLIPCSDSEPISVHTVKDNCMFSS 173
           + GPS + K  FL C +L+   D   IS+H    NC F S
Sbjct: 32  IIGPSGSGKTTFLRCLNLLERPDEGIISIHDKVINCRFPS 71



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>MLX_HUMAN (Q9UH92) Max-like protein X (Max-like bHLHZip protein) (BigMax|
           protein) (Protein Mlx) (Transcription factor-like
           protein 4)
          Length = 298

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 106 QLKHHLIKGMMEM*NKVMQLNTGLRTYNYLSRCEH*WVQNHCK 234
           Q+K ++ +G+M+   +    +  + ++  LS C   W++ HCK
Sbjct: 236 QVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHCK 278



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>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +1

Query: 280 TVQSALAATASLIWTPA*QMNKSAPPGCRASRSVAPSPIITSVL*PRSCLICCTATALPP 459
           T  S+ AA A+   +P  +   +APP         P P +T+     S L   T+T  P 
Sbjct: 688 TSPSSPAAPAASSASPMFKPIFTAPPKSEKEGPTPPGPSVTATAPSSSSLPTTTSTTAPT 747

Query: 460 LREVGSVVSNPAYSP 504
            + V S +  PA  P
Sbjct: 748 FQPVFSSMGPPASVP 762


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,737,189
Number of Sequences: 219361
Number of extensions: 1770787
Number of successful extensions: 4308
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4307
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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