Clone Information

BLAST Search Result

Clone Name	rbasd24l03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_193723.1\| Oryza sativa (japonica cultivar-group), predic...	333	5e-88
2	dbj\|AK099867.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	333	5e-88
3	gb\|AY109130.1\| Zea mays PCO125769 mRNA sequence	204	3e-49
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	178	2e-41
5	dbj\|AP003217.3\| Oryza sativa (japonica cultivar-group) genomic D...	178	2e-41
6	emb\|AL672023.7\| Mouse DNA sequence from clone RP23-339O19 on chr...	46	0.15
7	gb\|U87293.1\|U87293 Bulinus senegalensis clone SEN239M species-sp...	44	0.61
8	gb\|AC092728.2\| Canis familiaris clone RP81-237O17, complete sequ...	42	2.4
9	emb\|AL645808.13\| Mouse DNA sequence from clone RP23-427P14 on ch...	42	2.4
10	gb\|AC027308.5\| Homo sapiens chromosome 5 clone CTB-56J15, comple...	42	2.4
11	gb\|L22945.1\|HIV1SE365A Human immunodeficiency virus type 1 (SE36...	42	2.4
12	ref\|NM_122000.2\| Arabidopsis thaliana unknown protein AT5G19930 ...	40	9.5
13	gb\|AC164597.11\| Mus musculus chromosome 15, clone RP23-108H23, c...	40	9.5
14	ref\|XM_638972.1\| Dictyostelium discoideum hypothetical protein (...	40	9.5
15	ref\|XM_477643.1\| Oryza sativa (japonica cultivar-group), mRNA	40	9.5
16	gb\|BT014374.1\| Lycopersicon esculentum clone 133662F, mRNA sequence	40	9.5
17	gb\|DP000012.1\| Macropus eugenii target 1 genomic scaffold	40	9.5
18	emb\|AL731585.5\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	40	9.5
19	emb\|CR339051.6\| Zebrafish DNA sequence from clone DKEY-223N8 in ...	40	9.5
20	emb\|AL662989.3\|OSJN00190 Oryza sativa genomic DNA, chromosome 4,...	40	9.5
21	emb\|AJ302074.2\|SPN302074 Streptococcus pneumoniae bacteriophage ...	40	9.5
22	gb\|AC010026.7\| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell...	40	9.5
23	gb\|AC011907.4\| Drosophila melanogaster 3L BAC RP98-18B21 (Roswel...	40	9.5
24	gb\|AC112516.2\| Homo sapiens chromosome 3 clone RP11-350F11, comp...	40	9.5
25	gb\|AC121493.1\| Homo sapiens chromosome 3 clone RP11-88H12, compl...	40	9.5
26	dbj\|AB096061.2\| Phragmites australis NRT2 mRNA for putative high...	40	9.5
27	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
28	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
29	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
30	emb\|BX833886.1\|CNS0A1RS Arabidopsis thaliana Full-length cDNA Co...	40	9.5
31	emb\|BX830437.1\|CNS0A18F Arabidopsis thaliana Full-length cDNA Co...	40	9.5
32	gb\|AC105422.3\| Homo sapiens BAC clone RP11-707O8 from 2, complet...	40	9.5
33	gb\|AC130823.4\| Mus musculus BAC clone RP23-320F5 from chromosome...	40	9.5
34	gb\|AY085046.1\| Arabidopsis thaliana clone 12566 mRNA, complete s...	40	9.5
35	gb\|AE013218.1\| Buchnera aphidicola str. Sg (Schizaphis graminum)...	40	9.5
36	gb\|AF296836.1\|F28I16 Arabidopsis thaliana BAC F28I16	40	9.5
37	gb\|AC145409.3\| Macropus eugenii clone ME_KBa-528O13, complete se...	40	9.5
38	dbj\|AP006237.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
39	dbj\|AP005462.5\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
40	dbj\|AP005063.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
41	dbj\|AP002462.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	9.5
42	emb\|AL845372.6\| Zebrafish DNA sequence from clone DKEYP-113C1 in...	40	9.5
43	gb\|AE003468.3\| Drosophila melanogaster chromosome 3L, section 2 ...	40	9.5
44	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.5
45	emb\|AL713929.5\|CNS07YP6 Oryza sativa chromosome 12, . BAC OSJNBb...	40	9.5

>ref|NM_193723.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 798

 Score =  333 bits (168), Expect = 5e-88
 Identities = 357/420 (85%)
 Strand = Plus / Minus

                                                                       
Query: 226 cttcagggtagtgacaagccgtggttgttcatcactaagcacaccgatttcagatgacca 285
           |||||| ||||| | ||| ||||| |||||||||||||||||||| | ||| ||||||||
Sbjct: 495 cttcagagtagtaataagacgtggctgttcatcactaagcacaccaagttcggatgacca 436

                                                                       
Query: 286 agtgtctccattgcagcagcaataatggccaataatagcacctattataccagttataac 345
           ||| |||||||||||||||||||| || ||||| ||  |||| || ||||||||||||||
Sbjct: 435 agtatctccattgcagcagcaatagtgaccaatgatgccaccaataataccagttataac 376

                                                                       
Query: 346 ctttgaaccatttgagtccaagcattgatcttgacccccagtcattatcgccaatacaat 405
           ||||||  |||  ||||||| |||||||||||| || || |||||| | |||||||  ||
Sbjct: 375 ctttgactcatgggagtccaggcattgatcttgtcctccggtcattgttgccaatatgat 316

                                                                       
Query: 406 aaccaatacagttgctattgcactatttgccagaacttggatccagttgcgctggccacc 465
            ||||||| ||| ||||||   |||||||| || ||||||||||||||||||||||| ||
Sbjct: 315 gaccaatatagtagctattaagctatttgctaggacttggatccagttgcgctggccgcc 256

                                                                       
Query: 466 ctccttgaagtcctcctcaacgcgtcgcttgcggtcctcgccgatcttggtcaccttgga 525
           |||||||||||| ||||| | ||| ||||| | |||| |||||||||||||| |||||||
Sbjct: 255 ctccttgaagtcgtcctcgatgcggcgcttcctgtccgcgccgatcttggtcgccttgga 196

                                                                       
Query: 526 cgaggtgaagaagaaagccagcagcagcgctccgtacctatagccgcaggcaaggtggag 585
           ||||||||||||||| |||||||  ||||| |||||||| || |||||||| ||||||| 
Sbjct: 195 cgaggtgaagaagaaggccagcacgagcgcgccgtacctgtacccgcaggcgaggtggat 136

                                                                       
Query: 586 cgccatcacggcaaacccggcagctccgcccgaggcgtctagcgagcgccgccggacggc 645
           |||||| ||| | |||||||| || ||||| ||| |||| |||||||| || ||||||||
Sbjct: 135 cgccatgacgacgaacccggctgccccgccggagccgtccagcgagcggcggcggacggc 76

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>dbj|AK099867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111E19, full
           insert sequence
          Length = 1424

 Score =  333 bits (168), Expect = 5e-88
 Identities = 357/420 (85%)
 Strand = Plus / Minus

                                                                       
Query: 226 cttcagggtagtgacaagccgtggttgttcatcactaagcacaccgatttcagatgacca 285
           |||||| ||||| | ||| ||||| |||||||||||||||||||| | ||| ||||||||
Sbjct: 572 cttcagagtagtaataagacgtggctgttcatcactaagcacaccaagttcggatgacca 513

                                                                       
Query: 286 agtgtctccattgcagcagcaataatggccaataatagcacctattataccagttataac 345
           ||| |||||||||||||||||||| || ||||| ||  |||| || ||||||||||||||
Sbjct: 512 agtatctccattgcagcagcaatagtgaccaatgatgccaccaataataccagttataac 453

                                                                       
Query: 346 ctttgaaccatttgagtccaagcattgatcttgacccccagtcattatcgccaatacaat 405
           ||||||  |||  ||||||| |||||||||||| || || |||||| | |||||||  ||
Sbjct: 452 ctttgactcatgggagtccaggcattgatcttgtcctccggtcattgttgccaatatgat 393

                                                                       
Query: 406 aaccaatacagttgctattgcactatttgccagaacttggatccagttgcgctggccacc 465
            ||||||| ||| ||||||   |||||||| || ||||||||||||||||||||||| ||
Sbjct: 392 gaccaatatagtagctattaagctatttgctaggacttggatccagttgcgctggccgcc 333

                                                                       
Query: 466 ctccttgaagtcctcctcaacgcgtcgcttgcggtcctcgccgatcttggtcaccttgga 525
           |||||||||||| ||||| | ||| ||||| | |||| |||||||||||||| |||||||
Sbjct: 332 ctccttgaagtcgtcctcgatgcggcgcttcctgtccgcgccgatcttggtcgccttgga 273

                                                                       
Query: 526 cgaggtgaagaagaaagccagcagcagcgctccgtacctatagccgcaggcaaggtggag 585
           ||||||||||||||| |||||||  ||||| |||||||| || |||||||| ||||||| 
Sbjct: 272 cgaggtgaagaagaaggccagcacgagcgcgccgtacctgtacccgcaggcgaggtggat 213

                                                                       
Query: 586 cgccatcacggcaaacccggcagctccgcccgaggcgtctagcgagcgccgccggacggc 645
           |||||| ||| | |||||||| || ||||| ||| |||| |||||||| || ||||||||
Sbjct: 212 cgccatgacgacgaacccggctgccccgccggagccgtccagcgagcggcggcggacggc 153



 Score =  167 bits (84), Expect = 6e-38
 Identities = 114/124 (91%)
 Strand = Plus / Minus

                                                                       
Query: 106 aatgcacgcataagctgtaatcacagatgttagcagcacagacactgcattaacagcatc 165
           |||||||||||||||||||| | ||| |||||| |||||||| || |||||||| |||||
Sbjct: 941 aatgcacgcataagctgtaaccgcagttgttagtagcacagatacagcattaaccgcatc 882

                                                                       
Query: 166 attatcaaggatagtcattccagaaatcttggtgacggtaggtccccgtttactgaccac 225
           |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 881 attatccaggatagtcattccagaaatcttggtgactgtagggccccgtttactgaccac 822

               
Query: 226 cttc 229
           ||||
Sbjct: 821 cttc 818

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>gb|AY109130.1| Zea mays PCO125769 mRNA sequence
          Length = 757

 Score =  204 bits (103), Expect = 3e-49
 Identities = 208/243 (85%)
 Strand = Plus / Minus

                                                                       
Query: 241 aagccgtggttgttcatcactaagcacaccgatttcagatgaccaagtgtctccattgca 300
           ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 257 aagccttggttgttcattactaagcacaccgatttcagatgaccaagtatctccattgca 198

                                                                       
Query: 301 gcagcaataatggccaataatagcacctattataccagttataacctttgaaccatttga 360
           ||| || || |||||||| ||| ||||||| || |||||||||| |||||||||||||||
Sbjct: 197 gcaacagtagtggccaatgataccacctatgatgccagttataagctttgaaccatttga 138

                                                                       
Query: 361 gtccaagcattgatcttgacccccagtcattatcgccaatacaataaccaatacagttgc 420
           ||||| ||| |||||||| || ||||||||||  || ||||  | ||||| |||||| ||
Sbjct: 137 gtccatgcactgatcttgccctccagtcattagtgcaaatatcacaaccagtacagtagc 78

                                                                       
Query: 421 tattgcactatttgccagaacttggatccagttgcgctggccaccctccttgaagtcctc 480
            |||    ||| ||  |||||||||||||||||||| || || ||||||||||||| |||
Sbjct: 77  aattatcatatgtggtagaacttggatccagttgcgatgcccgccctccttgaagttctc 18

              
Query: 481 ctc 483
           |||
Sbjct: 17  ctc 15



 Score =  115 bits (58), Expect = 2e-22
 Identities = 118/138 (85%)
 Strand = Plus / Minus

                                                                       
Query: 92  ttctaaaagaagaaaatgcacgcataagctgtaatcacagatgttagcagcacagacact 151
           |||||||||| | |||||||  ||||||||||||  |||| ||||||||| | ||| |||
Sbjct: 655 ttctaaaagatgcaaatgcatacataagctgtaagtacagttgttagcagaatagatact 596

                                                                       
Query: 152 gcattaacagcatcattatcaaggatagtcattccagaaatcttggtgacggtaggtccc 211
           |||||||||||||| || || ||||||||||| ||||||||||| || || ||||| |||
Sbjct: 595 gcattaacagcatcgttgtccaggatagtcatcccagaaatctttgtaaccgtagggccc 536

                             
Query: 212 cgtttactgaccaccttc 229
           | ||| ||||||||||||
Sbjct: 535 cttttgctgaccaccttc 518

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  178 bits (90), Expect = 2e-41
 Identities = 171/198 (86%)
 Strand = Plus / Minus

                                                                            
Query: 448      ccagttgcgctggccaccctccttgaagtcctcctcaacgcgtcgcttgcggtcctcgcc 507
                ||||||||||||||| |||||||||||||| ||||| | ||| ||||| | |||| ||||
Sbjct: 17693604 ccagttgcgctggccgccctccttgaagtcgtcctcgatgcggcgcttcctgtccgcgcc 17693545

                                                                            
Query: 508      gatcttggtcaccttggacgaggtgaagaagaaagccagcagcagcgctccgtacctata 567
                |||||||||| |||||||||||||||||||||| |||||||  ||||| |||||||| ||
Sbjct: 17693544 gatcttggtcgccttggacgaggtgaagaagaaggccagcacgagcgcgccgtacctgta 17693485

                                                                            
Query: 568      gccgcaggcaaggtggagcgccatcacggcaaacccggcagctccgcccgaggcgtctag 627
                 |||||||| ||||||| |||||| ||| | |||||||| || ||||| ||| |||| ||
Sbjct: 17693484 cccgcaggcgaggtggatcgccatgacgacgaacccggctgccccgccggagccgtccag 17693425

                                  
Query: 628      cgagcgccgccggacggc 645
                |||||| || ||||||||
Sbjct: 17693424 cgagcggcggcggacggc 17693407



 Score =  163 bits (82), Expect = 1e-36
 Identities = 112/122 (91%)
 Strand = Plus / Minus

                                                                            
Query: 106      aatgcacgcataagctgtaatcacagatgttagcagcacagacactgcattaacagcatc 165
                |||||||||||||||||||| | ||| |||||| |||||||| || |||||||| |||||
Sbjct: 17701990 aatgcacgcataagctgtaaccgcagttgttagtagcacagatacagcattaaccgcatc 17701931

                                                                            
Query: 166      attatcaaggatagtcattccagaaatcttggtgacggtaggtccccgtttactgaccac 225
                |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 17701930 attatccaggatagtcattccagaaatcttggtgactgtagggccccgtttactgaccac 17701871

                  
Query: 226      ct 227
                ||
Sbjct: 17701870 ct 17701869



 Score =  163 bits (82), Expect = 1e-36
 Identities = 190/226 (84%)
 Strand = Plus / Minus

                                                                            
Query: 224      accttcagggtagtgacaagccgtggttgttcatcactaagcacaccgatttcagatgac 283
                |||||||| ||||| | ||| ||||| |||||||||||||||||||| | ||| ||||||
Sbjct: 17694522 accttcagagtagtaataagacgtggctgttcatcactaagcacaccaagttcggatgac 17694463

                                                                            
Query: 284      caagtgtctccattgcagcagcaataatggccaataatagcacctattataccagttata 343
                ||||| |||||||||||||||||||| || ||||| ||  |||| || ||||||||||||
Sbjct: 17694462 caagtatctccattgcagcagcaatagtgaccaatgatgccaccaataataccagttata 17694403

                                                                            
Query: 344      acctttgaaccatttgagtccaagcattgatcttgacccccagtcattatcgccaataca 403
                ||||||||  |||  ||||||| |||||||||||| || || |||||| | |||||||  
Sbjct: 17694402 acctttgactcatgggagtccaggcattgatcttgtcctccggtcattgttgccaatatg 17694343

                                                              
Query: 404      ataaccaatacagttgctattgcactatttgccagaacttggatcc 449
                || ||||||| ||| ||||||   |||||||| || ||||||||||
Sbjct: 17694342 atgaccaatatagtagctattaagctatttgctaggacttggatcc 17694297



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 466      ctccttgaagtcctcctcaa 485
                ||||||||||||||||||||
Sbjct: 16281874 ctccttgaagtcctcctcaa 16281855

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>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0094H06
          Length = 147245

 Score =  178 bits (90), Expect = 2e-41
 Identities = 171/198 (86%)
 Strand = Plus / Minus

                                                                         
Query: 448   ccagttgcgctggccaccctccttgaagtcctcctcaacgcgtcgcttgcggtcctcgcc 507
             ||||||||||||||| |||||||||||||| ||||| | ||| ||||| | |||| ||||
Sbjct: 75139 ccagttgcgctggccgccctccttgaagtcgtcctcgatgcggcgcttcctgtccgcgcc 75080

                                                                         
Query: 508   gatcttggtcaccttggacgaggtgaagaagaaagccagcagcagcgctccgtacctata 567
             |||||||||| |||||||||||||||||||||| |||||||  ||||| |||||||| ||
Sbjct: 75079 gatcttggtcgccttggacgaggtgaagaagaaggccagcacgagcgcgccgtacctgta 75020

                                                                         
Query: 568   gccgcaggcaaggtggagcgccatcacggcaaacccggcagctccgcccgaggcgtctag 627
              |||||||| ||||||| |||||| ||| | |||||||| || ||||| ||| |||| ||
Sbjct: 75019 cccgcaggcgaggtggatcgccatgacgacgaacccggctgccccgccggagccgtccag 74960

                               
Query: 628   cgagcgccgccggacggc 645
             |||||| || ||||||||
Sbjct: 74959 cgagcggcggcggacggc 74942



 Score =  163 bits (82), Expect = 1e-36
 Identities = 112/122 (91%)
 Strand = Plus / Minus

                                                                         
Query: 106   aatgcacgcataagctgtaatcacagatgttagcagcacagacactgcattaacagcatc 165
             |||||||||||||||||||| | ||| |||||| |||||||| || |||||||| |||||
Sbjct: 83525 aatgcacgcataagctgtaaccgcagttgttagtagcacagatacagcattaaccgcatc 83466

                                                                         
Query: 166   attatcaaggatagtcattccagaaatcttggtgacggtaggtccccgtttactgaccac 225
             |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 83465 attatccaggatagtcattccagaaatcttggtgactgtagggccccgtttactgaccac 83406

               
Query: 226   ct 227
             ||
Sbjct: 83405 ct 83404



 Score =  163 bits (82), Expect = 1e-36
 Identities = 190/226 (84%)
 Strand = Plus / Minus

                                                                         
Query: 224   accttcagggtagtgacaagccgtggttgttcatcactaagcacaccgatttcagatgac 283
             |||||||| ||||| | ||| ||||| |||||||||||||||||||| | ||| ||||||
Sbjct: 76057 accttcagagtagtaataagacgtggctgttcatcactaagcacaccaagttcggatgac 75998

                                                                         
Query: 284   caagtgtctccattgcagcagcaataatggccaataatagcacctattataccagttata 343
             ||||| |||||||||||||||||||| || ||||| ||  |||| || ||||||||||||
Sbjct: 75997 caagtatctccattgcagcagcaatagtgaccaatgatgccaccaataataccagttata 75938

                                                                         
Query: 344   acctttgaaccatttgagtccaagcattgatcttgacccccagtcattatcgccaataca 403
             ||||||||  |||  ||||||| |||||||||||| || || |||||| | |||||||  
Sbjct: 75937 acctttgactcatgggagtccaggcattgatcttgtcctccggtcattgttgccaatatg 75878

                                                           
Query: 404   ataaccaatacagttgctattgcactatttgccagaacttggatcc 449
             || ||||||| ||| ||||||   |||||||| || ||||||||||
Sbjct: 75877 atgaccaatatagtagctattaagctatttgctaggacttggatcc 75832

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>emb|AL672023.7| Mouse DNA sequence from clone RP23-339O19 on chromosome X, complete
              sequence
          Length = 160615

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 205    aggtccccgtttactgaccacct 227
              |||||||||||||||||||||||
Sbjct: 109063 aggtccccgtttactgaccacct 109085

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>gb|U87293.1|U87293 Bulinus senegalensis clone SEN239M species-specific RAPD marker
          Length = 519

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 340 tataacctttgaaccatttgag 361
           ||||||||||||||||||||||
Sbjct: 445 tataacctttgaaccatttgag 466

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>gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequence
          Length = 141578

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 668    agggcggcaccgagggccgag 688
              |||||||||||||||||||||
Sbjct: 122389 agggcggcaccgagggccgag 122409

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>emb|AL645808.13| Mouse DNA sequence from clone RP23-427P14 on chromosome 13 Contains the
              gene for a novel protein similar to myosin, light
              polypeptide kinase 2 Mylk2, a novel gene, the Wrnip gene
              for Werner syndrome homolog (human) interacting protein,
              the Serpinb1a gene for serine (or cysteine) proteinase
              inhibitor clade B (ovalbumin) member 1a, a Serpinb1
              pseudogene and a CpG island, complete sequence
          Length = 190673

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 286    agtgtctccattgcagcagca 306
              |||||||||||||||||||||
Sbjct: 128498 agtgtctccattgcagcagca 128518

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>gb|AC027308.5| Homo sapiens chromosome 5 clone CTB-56J15, complete sequence
          Length = 270154

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 89     tgcttctaaaagaagaaaatg 109
              |||||||||||||||||||||
Sbjct: 102802 tgcttctaaaagaagaaaatg 102822

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>gb|L22945.1|HIV1SE365A Human immunodeficiency virus type 1 (SE365) proviral DNA encoding
            env, tat, vpu, rev, and nef genes
          Length = 3315

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 319  aatagcacctattataccagttata 343
            ||||||||| |||||||||||||||
Sbjct: 1037 aatagcaccaattataccagttata 1061

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>ref|NM_122000.2| Arabidopsis thaliana unknown protein AT5G19930 mRNA, complete cds
          Length = 1221

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 281 gaccaagtgtctccattgcagcag 304
           ||||||||||||||||| ||||||
Sbjct: 496 gaccaagtgtctccattacagcag 473

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>gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, complete sequence
          Length = 190235

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   tccacattaacatgattgag 56
            ||||||||||||||||||||
Sbjct: 1303 tccacattaacatgattgag 1284

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>ref|XM_638972.1| Dictyostelium discoideum hypothetical protein (DDB0203238), partial
            mRNA
          Length = 3015

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 396  ccaatacaataaccaataca 415
            ||||||||||||||||||||
Sbjct: 1811 ccaatacaataaccaataca 1830

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>ref|XM_477643.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 219

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 466 ctccttgaagtcctcctcaa 485
           ||||||||||||||||||||
Sbjct: 102 ctccttgaagtcctcctcaa 83

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>gb|BT014374.1| Lycopersicon esculentum clone 133662F, mRNA sequence
          Length = 1140

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 281 gaccaagtgtctccattgcagcagcaataatggccaataatagcacctatta 332
           ||||| ||||| |||||||||||||| || || ||||| ||| |||| ||||
Sbjct: 511 gaccatgtgtccccattgcagcagcagtactgaccaatgataccaccaatta 460

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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tgaagtaaacatcagtcatt 22
              ||||||||||||||||||||
Sbjct: 128209 tgaagtaaacatcagtcatt 128228

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>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15,
             complete sequence
          Length = 185021

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 466   ctccttgaagtcctcctcaa 485
             ||||||||||||||||||||
Sbjct: 13954 ctccttgaagtcctcctcaa 13973

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>emb|CR339051.6| Zebrafish DNA sequence from clone DKEY-223N8 in linkage group 7, complete
              sequence
          Length = 176851

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    tcattatcgccaatacaata 406
              ||||||||||||||||||||
Sbjct: 138223 tcattatcgccaatacaata 138204

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>emb|AL662989.3|OSJN00190 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C12,
             complete sequence
          Length = 138715

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   ctccttgaagtcctcctcaa 485
             ||||||||||||||||||||
Sbjct: 61201 ctccttgaagtcctcctcaa 61182

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>emb|AJ302074.2|SPN302074 Streptococcus pneumoniae bacteriophage MM1 complete genome
          Length = 40248

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   aaaatgcacgcataagctgtaatc 127
             ||||||||||||| ||||||||||
Sbjct: 14087 aaaatgcacgcatgagctgtaatc 14064

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>gb|AC010026.7| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 179776

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 153  cattaacagcatcattatca 172
            ||||||||||||||||||||
Sbjct: 2246 cattaacagcatcattatca 2265

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>gb|AC011907.4| Drosophila melanogaster 3L BAC RP98-18B21 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 164597

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   cattaacagcatcattatca 172
             ||||||||||||||||||||
Sbjct: 74838 cattaacagcatcattatca 74819

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>gb|AC112516.2| Homo sapiens chromosome 3 clone RP11-350F11, complete sequence
          Length = 184868

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   atcacagatgttagcagcac 144
             ||||||||||||||||||||
Sbjct: 51259 atcacagatgttagcagcac 51278

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>gb|AC121493.1| Homo sapiens chromosome 3 clone RP11-88H12, complete sequence
          Length = 178780

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    atcacagatgttagcagcac 144
              ||||||||||||||||||||
Sbjct: 177764 atcacagatgttagcagcac 177783

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>dbj|AB096061.2| Phragmites australis NRT2 mRNA for putative high affinity nitrate
            transporter, complete cds
          Length = 1858

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 520  cttggacgaggtgaagaaga 539
            ||||||||||||||||||||
Sbjct: 1403 cttggacgaggtgaagaaga 1384

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 466      ctccttgaagtcctcctcaa 485
                ||||||||||||||||||||
Sbjct: 11691167 ctccttgaagtcctcctcaa 11691186



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 466     ctccttgaagtcctcctcaa 485
               ||||||||||||||||||||
Sbjct: 9463083 ctccttgaagtcctcctcaa 9463064

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 466      ctccttgaagtcctcctcaa 485
                ||||||||||||||||||||
Sbjct: 13617456 ctccttgaagtcctcctcaa 13617437

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 466      ctccttgaagtcctcctcaa 485
                ||||||||||||||||||||
Sbjct: 12392381 ctccttgaagtcctcctcaa 12392400

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>emb|BX833886.1|CNS0A1RS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL82ZA03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1051

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 281 gaccaagtgtctccattgcagcag 304
           ||||||||||||||||| ||||||
Sbjct: 485 gaccaagtgtctccattacagcag 462

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>emb|BX830437.1|CNS0A18F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB80ZG09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1017

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 281 gaccaagtgtctccattgcagcag 304
           ||||||||||||||||| ||||||
Sbjct: 470 gaccaagtgtctccattacagcag 447

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>gb|AC105422.3| Homo sapiens BAC clone RP11-707O8 from 2, complete sequence
          Length = 41655

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    atgattgagtattaggaaca 67
             ||||||||||||||||||||
Sbjct: 15180 atgattgagtattaggaaca 15199

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>gb|AC130823.4| Mus musculus BAC clone RP23-320F5 from chromosome 15, complete sequence
          Length = 193211

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     tccacattaacatgattgag 56
              ||||||||||||||||||||
Sbjct: 172817 tccacattaacatgattgag 172798

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>gb|AY085046.1| Arabidopsis thaliana clone 12566 mRNA, complete sequence
          Length = 1199

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 281 gaccaagtgtctccattgcagcag 304
           ||||||||||||||||| ||||||
Sbjct: 475 gaccaagtgtctccattacagcag 452

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>gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome
          Length = 641454

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     ttctaaaagaagaaaatgca 111
              ||||||||||||||||||||
Sbjct: 389184 ttctaaaagaagaaaatgca 389203

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>gb|AF296836.1|F28I16 Arabidopsis thaliana BAC F28I16
          Length = 84334

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 281   gaccaagtgtctccattgcagcag 304
             ||||||||||||||||| ||||||
Sbjct: 27197 gaccaagtgtctccattacagcag 27220

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>gb|AC145409.3| Macropus eugenii clone ME_KBa-528O13, complete sequence
          Length = 140426

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tgaagtaaacatcagtcatt 22
              ||||||||||||||||||||
Sbjct: 128209 tgaagtaaacatcagtcatt 128228

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>dbj|AP006237.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0008D07
          Length = 156874

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   ctccttgaagtcctcctcaa 485
             ||||||||||||||||||||
Sbjct: 43951 ctccttgaagtcctcctcaa 43932

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>dbj|AP005462.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0613B07
          Length = 191756

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 466   ctccttgaagtcctcctcaa 485
             ||||||||||||||||||||
Sbjct: 36663 ctccttgaagtcctcctcaa 36682

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>dbj|AP005063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0016I05
          Length = 140933

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 466    ctccttgaagtcctcctcaa 485
              ||||||||||||||||||||
Sbjct: 139541 ctccttgaagtcctcctcaa 139560

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>dbj|AP002462.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T8N9
          Length = 36329

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    ggaaaacccaaccaaaccct 88
             ||||||||||||||||||||
Sbjct: 25854 ggaaaacccaaccaaaccct 25873

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>emb|AL845372.6| Zebrafish DNA sequence from clone DKEYP-113C1 in linkage group 20,
             complete sequence
          Length = 80017

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   acactgcattaacagcatca 166
             ||||||||||||||||||||
Sbjct: 65252 acactgcattaacagcatca 65271

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>gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 of 83 of the complete
              sequence
          Length = 307657

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    cattaacagcatcattatca 172
              ||||||||||||||||||||
Sbjct: 240077 cattaacagcatcattatca 240058

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 466      ctccttgaagtcctcctcaa 485
                ||||||||||||||||||||
Sbjct: 13571730 ctccttgaagtcctcctcaa 13571711

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>emb|AL713929.5|CNS07YP6 Oryza sativa chromosome 12, . BAC OSJNBb0029H23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 119798

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 466   ctccttgaagtcctcctcaa 485
             ||||||||||||||||||||
Sbjct: 79768 ctccttgaagtcctcctcaa 79787


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,756,672
Number of Sequences: 3902068
Number of extensions: 5756672
Number of successful extensions: 114701
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114416
Number of HSP's gapped (non-prelim): 285
length of query: 692
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 669
effective length of database: 17,143,297,704
effective search space: 11468866163976
effective search space used: 11468866163976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result