ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24k05 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | YCF2_SILLA (Q589A6) Protein ycf2 | 35 | 0.16 | 2 | YCF2_NYMAL (Q6EVY7) Protein ycf2 | 33 | 1.0 | 3 | YCF2_SPIOL (P08973) Protein ycf2 | 32 | 2.3 | 4 | YCF2_LOTJA (Q9B1K6) Protein ycf2 | 32 | 2.3 | 5 | LSB6_YEAST (P42951) Phosphatidylinositol 4-kinase LSB6 (EC 2.7.1... | 31 | 3.8 | 6 | AGUA_VIBPA (Q87NU5) Putative agmatine deiminase (EC 3.5.3.12) (A... | 31 | 3.8 | 7 | AGUA_ARATH (Q8GWW7) Agmatine deiminase (EC 3.5.3.12) (Agmatine i... | 30 | 5.0 | 8 | YCF2_OENHO (Q9MEF2) Protein ycf2 | 30 | 5.0 | 9 | MUKB_ECOLI (P22523) Chromosome partition protein mukB (Structura... | 30 | 6.6 | 10 | YCF2_LYCES (P61242) Protein ycf2 | 30 | 6.6 | 11 | YCF2B_ATRBE (Q8S8U1) Protein ycf2 | 30 | 6.6 | 12 | YCF2A_ATRBE (Q8S8V2) Protein ycf2 | 30 | 6.6 | 13 | YCF2_TOBAC (P09976) Protein ycf2 | 30 | 6.6 | 14 | CYSP1_MAIZE (Q10716) Cysteine proteinase 1 precursor (EC 3.4.22.-) | 30 | 8.6 |
|---|
>YCF2_SILLA (Q589A6) Protein ycf2| Length = 2223 Score = 35.4 bits (80), Expect = 0.16 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 17/141 (12%) Frame = -1 Query: 637 LHRGKSFKFGSLQMFMENDGSCEDMGPRAFPVKEVHKIAVLDIRLANADRHAGNILVSKE 458 + R + G L + M + G D + F ++++ V + L + + + + Sbjct: 94 VERKNLYLIGLLPIPMNSIGPRNDTLEKPFWSSNINRLIVSLLYLPKGKNISASCFLDPK 153 Query: 457 DGATCKLIPIDHGYCLPEKFEDCTFEWLYWPQARE----RFSNETIAYIESLDAEEDIKL 290 + + +PI +PE + W W + + SNET+A IE E+DIK Sbjct: 154 ESTSTWFLPITKKCIMPESNRGSQW-WRNWIGKKRDSSCKISNETVAGIEISFKEKDIKY 212 Query: 289 LRF-------------HGWEL 266 L F H WEL Sbjct: 213 LEFLFVYYMDDPISKDHDWEL 233
>YCF2_NYMAL (Q6EVY7) Protein ycf2| Length = 2253 Score = 32.7 bits (73), Expect = 1.0 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 17/141 (12%) Frame = -1 Query: 637 LHRGKSFKFGSLQMFMENDGSCEDMGPRAFPVKEVHKIAVLDIRLANADRHAGNILVSKE 458 + R + G L + M + G D +F ++++ V + L + + + + + Sbjct: 98 VERKNLYLMGLLPIPMNSIGPRNDTLEESFWSPNINRLIVSLLYLPKGKKISESCFMDPK 157 Query: 457 DGATCKLIPIDHGYCLPEKFEDCTFEWLYWPQARE----RFSNETIAYIESLDAEEDIKL 290 + ++PI +PE + W W + + SNET+A IE E+DIK Sbjct: 158 ESTW--VLPITQKCIMPESNWGSRW-WRNWIGKKRDSSCKISNETVAGIEISFKEKDIKY 214 Query: 289 LRF-------------HGWEL 266 L F HGWEL Sbjct: 215 LEFLFVSYMDDPIRKDHGWEL 235
>YCF2_SPIOL (P08973) Protein ycf2| Length = 2131 Score = 31.6 bits (70), Expect = 2.3 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 17/150 (11%) Frame = -1 Query: 637 LHRGKSFKFGSLQMFMENDGSCEDMGPRAFPVKEVHKIAVLDIRLANADRHAGNILVSKE 458 + R + G + M + G D ++F ++++ V + L + + + + + Sbjct: 98 VERKNLYLIGLFPIPMNSIGPRNDTLEKSFGSSNINRLIVSLLYLPKGKKISESYFLDPK 157 Query: 457 DGATCKLIPIDHGYCLPEKFEDCTFEWLYWPQARE----RFSNETIAYIESLDAEEDIKL 290 + +PI +PE + W W R + SNET+A IE E+DI+ Sbjct: 158 ESTW--FLPITKKCIMPESNRGSRW-WRNWIGKRRDSSCKISNETVAGIEISFKEKDIQY 214 Query: 289 LRF-------------HGWELSSSCARVLR 239 L F H WEL + LR Sbjct: 215 LEFPFVYYMDDPIRKDHDWELFDCLSLFLR 244
>YCF2_LOTJA (Q9B1K6) Protein ycf2| Length = 2298 Score = 31.6 bits (70), Expect = 2.3 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 17/143 (11%) Frame = -1 Query: 643 RSLHRGKSFKFGSLQMFMENDGSCEDMGPRAFPVKEVHKIAVLDIRLANADRHAGNILVS 464 + + R + G L + M + G D +F ++++ V + L + + + + Sbjct: 96 KMVERKNLYLTGLLPIPMNSIGPRNDTLEESFESSNINRLIVPLLYLPKEKKISESSFLD 155 Query: 463 KEDGATCKLIPIDHGYCLPEKFEDCTFEWLYWPQARE----RFSNETIAYIESLDAEEDI 296 ++ +++PI +PE + W W + + + SNET+A IE E+DI Sbjct: 156 PKEST--QVLPITKKCIMPESNWGSRW-WRDWIRKKRDSSCKISNETVAGIEISFKEKDI 212 Query: 295 KLLRF-------------HGWEL 266 K L F H WEL Sbjct: 213 KYLEFPFVYYMDDPIRKDHDWEL 235
>LSB6_YEAST (P42951) Phosphatidylinositol 4-kinase LSB6 (EC 2.7.1.67)| (PI4-kinase) (PtdIns-4-kinase) Length = 607 Score = 30.8 bits (68), Expect = 3.8 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%) Frame = -1 Query: 538 EVHKIAVLDIRLANADRHAGNILVS----KEDGATCKLIPIDHGYCLPEKFED----CTF 383 E+ K+ +LD + N DR N +V + KL ID+G P K D + Sbjct: 372 ELEKLIILDYIMRNTDRGLDNWMVKLIKLSNNKWRLKLAAIDNGLSFPWKHPDEWRLYPY 431 Query: 382 EWLYWP 365 WLY P Sbjct: 432 GWLYLP 437
>AGUA_VIBPA (Q87NU5) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine| iminohydrolase) Length = 360 Score = 30.8 bits (68), Expect = 3.8 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Frame = -1 Query: 433 PIDHGYCLPEKFEDCTFEWLYWPQARERF------SNETIAYIESLDAE 305 P G+ P +F+ + WL WP+ ++ + + ET A I +L AE Sbjct: 7 PAQDGFYFPAEFQPVSEVWLAWPERKDNWRDDALPAQETFARIANLIAE 55
>AGUA_ARATH (Q8GWW7) Agmatine deiminase (EC 3.5.3.12) (Agmatine iminohydrolase)| Length = 383 Score = 30.4 bits (67), Expect = 5.0 Identities = 8/34 (23%), Positives = 20/34 (58%) Frame = -1 Query: 433 PIDHGYCLPEKFEDCTFEWLYWPQARERFSNETI 332 P +HGY +P +++ W+ WP+ ++ + + + Sbjct: 8 PAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNAL 41
>YCF2_OENHO (Q9MEF2) Protein ycf2| Length = 2280 Score = 30.4 bits (67), Expect = 5.0 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 17/56 (30%) Frame = -1 Query: 382 EWLYWPQARE----RFSNETIAYIESLDAEEDIKLLRF-------------HGWEL 266 +W W R + SNET+A IE L E+D+K L F H WEL Sbjct: 156 KWRNWIGKRRDSSCKISNETVAGIEILFKEKDLKYLEFLFVYYMDDPIRKDHDWEL 211
>MUKB_ECOLI (P22523) Chromosome partition protein mukB (Structural maintenance| of chromosome related protein) Length = 1486 Score = 30.0 bits (66), Expect = 6.6 Identities = 24/95 (25%), Positives = 43/95 (45%) Frame = -1 Query: 412 LPEKFEDCTFEWLYWPQARERFSNETIAYIESLDAEEDIKLLRFHGWELSSSCARVLRIS 233 LP+ DC EWL QA+E + E + L E+ + + + + + V+ I+ Sbjct: 432 LPDLTADCAAEWLETFQAKELEATE-----KMLSLEQKMSMAQTAHSQFEQAYQLVVAIN 486 Query: 232 TMLXKKGAARGLTPYDIGRILCRETVNRDSVIEDI 128 L + A +D+ R L RE V++ + E + Sbjct: 487 GPLARNEA------WDVARELLREGVDQRHLAEQV 515
>YCF2_LYCES (P61242) Protein ycf2| Length = 2278 Score = 30.0 bits (66), Expect = 6.6 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 17/141 (12%) Frame = -1 Query: 637 LHRGKSFKFGSLQMFMENDGSCEDMGPRAFPVKEVHKIAVLDIRLANADRHAGNILVSKE 458 + R + G L + M + G D + ++++ V + L + + + ++ + Sbjct: 98 VERKNLYLIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVSLLYLPKGKKISESCFLNPK 157 Query: 457 DGATCKLIPIDHGYCLPEKFEDCTFEWLYWPQARE----RFSNETIAYIESLDAEEDIKL 290 + ++PI +PE + W W + + SNET+A IE L E+D+K Sbjct: 158 ESTW--VLPITKKCSMPESNWGSRW-WRNWIGKKRDSSCKISNETVAGIEILFKEKDLKY 214 Query: 289 LRF-------------HGWEL 266 L F H WEL Sbjct: 215 LEFLFVYYMDDPIRKDHDWEL 235
>YCF2B_ATRBE (Q8S8U1) Protein ycf2| Length = 2291 Score = 30.0 bits (66), Expect = 6.6 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 17/141 (12%) Frame = -1 Query: 637 LHRGKSFKFGSLQMFMENDGSCEDMGPRAFPVKEVHKIAVLDIRLANADRHAGNILVSKE 458 + R + G L + M + G D + ++++ V + L + + + ++ + Sbjct: 98 VERKNLYLIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVSLLYLPKGKKISESCFLNPK 157 Query: 457 DGATCKLIPIDHGYCLPEKFEDCTFEWLYWPQARE----RFSNETIAYIESLDAEEDIKL 290 + ++PI +PE + W W + + SNET+A IE L E+D+K Sbjct: 158 ESTW--VLPITKKCSMPESNWGSRW-WRNWIGKKRDSSCKISNETVAGIEILFKEKDLKY 214 Query: 289 LRF-------------HGWEL 266 L F H WEL Sbjct: 215 LEFLFVYYMDDPIRKDHDWEL 235
>YCF2A_ATRBE (Q8S8V2) Protein ycf2| Length = 2291 Score = 30.0 bits (66), Expect = 6.6 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 17/141 (12%) Frame = -1 Query: 637 LHRGKSFKFGSLQMFMENDGSCEDMGPRAFPVKEVHKIAVLDIRLANADRHAGNILVSKE 458 + R + G L + M + G D + ++++ V + L + + + ++ + Sbjct: 98 VERKNLYLIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVSLLYLPKGKKISESCFLNPK 157 Query: 457 DGATCKLIPIDHGYCLPEKFEDCTFEWLYWPQARE----RFSNETIAYIESLDAEEDIKL 290 + ++PI +PE + W W + + SNET+A IE L E+D+K Sbjct: 158 ESTW--VLPITKKCSMPESNWGSRW-WRNWIGKKRDSSCKISNETVAGIEILFKEKDLKY 214 Query: 289 LRF-------------HGWEL 266 L F H WEL Sbjct: 215 LEFLFVYYMDDPIRKDHDWEL 235
>YCF2_TOBAC (P09976) Protein ycf2| Length = 2280 Score = 30.0 bits (66), Expect = 6.6 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 17/141 (12%) Frame = -1 Query: 637 LHRGKSFKFGSLQMFMENDGSCEDMGPRAFPVKEVHKIAVLDIRLANADRHAGNILVSKE 458 + R + G L + M + G D + ++++ V + L + + + ++ + Sbjct: 98 VERKNLYLIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVSLLYLPKGKKISESCFLNPK 157 Query: 457 DGATCKLIPIDHGYCLPEKFEDCTFEWLYWPQARE----RFSNETIAYIESLDAEEDIKL 290 + ++PI +PE + W W + + SNET+A IE L E+D+K Sbjct: 158 ESTW--VLPITKKCSMPESNWGSRW-WRNWIGKKRDSSCKISNETVAGIEILFKEKDLKY 214 Query: 289 LRF-------------HGWEL 266 L F H WEL Sbjct: 215 LEFLFVYYMDDPIRKDHDWEL 235
>CYSP1_MAIZE (Q10716) Cysteine proteinase 1 precursor (EC 3.4.22.-)| Length = 371 Score = 29.6 bits (65), Expect = 8.6 Identities = 20/64 (31%), Positives = 29/64 (45%) Frame = +2 Query: 56 DLRHGLQEQVLTRPRENGVLRFLDDVLDHRVSIHSFPAQYTSYVIGCETSRSALLXEHGA 235 +LR + Q+L E+GV +F D PA++ +G SR ALL E G Sbjct: 75 NLRRARRHQLLDPSAEHGVTKFSDLT----------PAEFRRTYLGLRKSRRALLRELGE 124 Query: 236 DAQD 247 A + Sbjct: 125 SAHE 128 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,715,770 Number of Sequences: 219361 Number of extensions: 1946600 Number of successful extensions: 6032 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5693 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6032 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
