ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24k01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 876 bits (442), Expect = 0.0 Identities = 527/561 (93%), Gaps = 2/561 (0%) Strand = Plus / Plus Query: 1 caatactttatttaatttactcctatttattacttcctggaattatctatttatangnga 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || Sbjct: 32836 caatactttatttaatttactcctatttattact-cctggaattatctatttat-cggga 32893 Query: 61 cagataataccgcattctaggaagggctgagttgagtatgattaatttagaagatatgct 120 ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 32894 cagataataccccattctaggaagggctgagttgagtattattaatttagaagatatgct 32953 Query: 121 cgccttcttatttcccgtccttagtttaggaaagtggaaagttttttccttttattttag 180 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32954 caccttcttatttcccgtccttagtttaggaaagtggaaagttttttccttttattttag 33013 Query: 181 gaattttgggaacggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaa 240 ||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| ||| Sbjct: 33014 gaattttgggaacagaacatttcaacaaaggaagtctttcaccggtcaaacaagacgtaa 33073 Query: 241 gacttaatctaaaagaaattactagattgaatctatttgcattnnnnnnnccgatcaaaa 300 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 33074 gacttaatctaaaagaaattactagattgaatctatttgcattaaaaaaaccgatcaaaa 33133 Query: 301 aagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataagag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33134 aagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataagag 33193 Query: 361 gagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgctg 420 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 33194 gagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccgctg 33253 Query: 421 gcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33254 gcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtgg 33313 Query: 481 ttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaataga 540 |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 33314 ttggtgttttgattttttttggaaagggagtgtgtgcgagttgtctatttcaagaataga 33373 Query: 541 ttggatctatccggctgcact 561 ||||||||||||||||||||| Sbjct: 33374 ttggatctatccggctgcact 33394
>emb|X02595.1|CHTAATP1 T.aestivum chloroplast gene encoding ATP synthase CF-O subunit I & III Length = 2007 Score = 848 bits (428), Expect = 0.0 Identities = 527/563 (93%), Gaps = 4/563 (0%) Strand = Plus / Plus Query: 1 caatactttatttaatttactcctatttattacttcctggaattatctatttatangnga 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || Sbjct: 153 caatactttatttaatttactcctatttattact-cctggaattatctatttat-cggga 210 Query: 61 cagataataccgcattctaggaagggctg-agttg-agtatgattaatttagaagatatg 118 ||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 211 cagataataccccattctaggaagggctggagttggagtattattaatttagaagatatg 270 Query: 119 ctcgccttcttatttcccgtccttagtttaggaaagtggaaagttttttccttttatttt 178 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 ctcaccttcttatttcccgtccttagtttaggaaagtggaaagttttttccttttatttt 330 Query: 179 aggaattttgggaacggaacatttcaacaaaggaagcctttcaccggtcaaacntgacct 238 ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| | Sbjct: 331 aggaattttgggaacagaacatttcaacaaaggaagtctttcaccggtcaaacaagacgt 390 Query: 239 aagacttaatctaaaagaaattactagattgaatctatttgcattnnnnnnnccgatcaa 298 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 391 aagacttaatctaaaagaaattactagattgaatctatttgcattaaaaaaaccgatcaa 450 Query: 299 aaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataag 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 aaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataag 510 Query: 359 aggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgc 418 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 511 aggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccgc 570 Query: 419 tggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagt 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 tggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagt 630 Query: 479 ggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaata 538 |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 631 ggttggtgttttgattttttttggaaagggagtgtgtgcgagttgtctatttcaagaata 690 Query: 539 gattggatctatccggctgcact 561 ||||||||||||||||||||||| Sbjct: 691 gattggatctatccggctgcact 713
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 597 bits (301), Expect = e-167 Identities = 432/482 (89%), Gaps = 6/482 (1%) Strand = Plus / Minus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 61513 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 61454 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 61453 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 61399 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 61398 tttcaacaaaggagatctttcacaggtcaaacgagacctaagacttaatctaaaagaaat 61339 Query: 260 tactagattgaatctatttgcattnnnnnnnccgatcaaaaaagggcgagcgaagtaagt 319 || ||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 61338 tattagattgaatctatttgcattaaaaaaaccgatcaaaaaaggacgagcgaagtaagt 61279 Query: 320 gatcgaaaaactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 379 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61278 aatcgaaaaactttcttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 61219 Query: 380 aacccattctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaatac 439 |||||||||||| | |||||||||||||| |||||| ||||||||||||||||| Sbjct: 61218 aacccattcttttgtttttttagctcactggccattcgctgggagtttcgggcttaatac 61159 Query: 440 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgttttgannnnnnn 499 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 61158 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgtattgattttttt 61099 Query: 500 nggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 559 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61098 tggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 61039 Query: 560 ct 561 || Sbjct: 61038 ct 61037 Score = 42.1 bits (21), Expect = 1.9 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Minus Query: 1 caatacttta-tttaatttactcctatttatta 32 |||||||||| |||| ||||||||||||||||| Sbjct: 61617 caatactttactttactttactcctatttatta 61585
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 597 bits (301), Expect = e-167 Identities = 432/482 (89%), Gaps = 6/482 (1%) Strand = Plus / Plus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 34813 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 34872 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 34873 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 34927 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 34928 tttcaacaaaggagatctttcacaggtcaaacgagacctaagacttaatctaaaagaaat 34987 Query: 260 tactagattgaatctatttgcattnnnnnnnccgatcaaaaaagggcgagcgaagtaagt 319 || ||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 34988 tattagattgaatctatttgcattaaaaaaaccgatcaaaaaaggacgagcgaagtaagt 35047 Query: 320 gatcgaaaaactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 379 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35048 aatcgaaaaactttcttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 35107 Query: 380 aacccattctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaatac 439 |||||||||||| | |||||||||||||| |||||| ||||||||||||||||| Sbjct: 35108 aacccattcttttgtttttttagctcactggccattcgctgggagtttcgggcttaatac 35167 Query: 440 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgttttgannnnnnn 499 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 35168 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgtattgattttttt 35227 Query: 500 nggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 559 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35228 tggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 35287 Query: 560 ct 561 || Sbjct: 35288 ct 35289
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 597 bits (301), Expect = e-167 Identities = 432/482 (89%), Gaps = 6/482 (1%) Strand = Plus / Plus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 34811 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 34870 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 34871 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 34925 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 34926 tttcaacaaaggagatctttcacaggtcaaacgagacctaagacttaatctaaaagaaat 34985 Query: 260 tactagattgaatctatttgcattnnnnnnnccgatcaaaaaagggcgagcgaagtaagt 319 || ||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 34986 tattagattgaatctatttgcattaaaaaaaccgatcaaaaaaggacgagcgaagtaagt 35045 Query: 320 gatcgaaaaactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 379 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35046 aatcgaaaaactttcttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 35105 Query: 380 aacccattctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaatac 439 |||||||||||| | |||||||||||||| |||||| ||||||||||||||||| Sbjct: 35106 aacccattcttttgtttttttagctcactggccattcgctgggagtttcgggcttaatac 35165 Query: 440 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgttttgannnnnnn 499 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 35166 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgtattgattttttt 35225 Query: 500 nggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 559 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35226 tggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 35285 Query: 560 ct 561 || Sbjct: 35286 ct 35287
>gb|BT024124.1| Zea mays clone EL01N0450D02 mRNA sequence Length = 1622 Score = 583 bits (294), Expect = e-163 Identities = 432/483 (89%), Gaps = 7/483 (1%) Strand = Plus / Plus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 453 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 512 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 513 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 567 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 568 tttcaacaaaggagatctttcacaggtcaaacgagacctaagacttaatctaaaagaaat 627 Query: 260 tactagattgaatctatttgcattnnnnnnnccgatcaaaaaagggcgagcgaagtaagt 319 || ||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 628 tattagattgaatctatttgcattaaaaaaaccgatcaaaaaaggacgagcgaagtaagt 687 Query: 320 gatcgaaaaactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 379 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 688 aatcgaaaaactttcttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 747 Query: 380 aacccattctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaatac 439 |||||||||||| | |||||||||||||| |||||| ||||||||||||||||| Sbjct: 748 aacccattcttttgtttttttagctcactggccattcgctgggagtttcgggcttaatac 807 Query: 440 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgttttga-nnnnnn 498 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 808 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgtattgattttttt 867 Query: 499 nnggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgc 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 868 ttggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgc 927 Query: 559 act 561 ||| Sbjct: 928 act 930
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32671 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 32730 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32731 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 32790 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32791 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 32850 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 32851 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 32910 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 32911 agattggatctatccggctgcact 32934 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 32380 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 32437 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 32438 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 32497 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32498 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 32557 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 32558 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 32612 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 32613 agaaattactaaattgaatctattt 32637
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32671 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 32730 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32731 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 32790 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32791 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 32850 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 32851 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 32910 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 32911 agattggatctatccggctgcact 32934 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 32380 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 32437 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 32438 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 32497 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32498 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 32557 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 32558 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 32612 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 32613 agaaattactaaattgaatctattt 32637
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32629 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 32688 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32689 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 32748 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32749 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 32808 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 32809 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 32868 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 32869 agattggatctatccggctgcact 32892 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 32338 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 32395 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 32396 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 32455 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32456 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 32515 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 32516 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 32570 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 32571 agaaattactaaattgaatctattt 32595
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146260 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 146319 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 146320 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 146379 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146380 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 146439 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 146440 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 146499 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 146500 agattggatctatccggctgcact 146523 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 145969 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 146026 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 146027 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 146086 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 146087 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 146146 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 146147 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 146201 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 146202 agaaattactaaattgaatctattt 146226
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37954 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 38013 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 38014 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 38073 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38074 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 38133 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 38134 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 38193 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 38194 agattggatctatccggctgcact 38217 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 37663 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 37720 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 37721 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 37780 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 37781 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 37840 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 37841 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 37895 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 37896 agaaattactaaattgaatctattt 37920
>emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042F21, complete sequence Length = 167113 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164762 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 164821 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 164822 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 164881 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164882 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 164941 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 164942 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 165001 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 165002 agattggatctatccggctgcact 165025 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 164471 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 164528 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 164529 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 164588 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 164589 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 164648 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 164649 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 164703 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 164704 agaaattactaaattgaatctattt 164728
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30918 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 30977 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 30978 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 31037 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31038 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 31097 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 31098 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 31157 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 31158 agattggatctatccggctgcact 31181 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 30627 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 30684 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 30685 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 30744 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 30745 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 30804 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 30805 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 30859 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 30860 agaaattactaaattgaatctattt 30884
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105851 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 105910 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 105911 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 105970 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105971 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 106030 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 106031 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 106090 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 106091 agattggatctatccggctgcact 106114 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 105560 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 105617 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 105618 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 105677 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 105678 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 105737 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 105738 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 105792 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 105793 agaaattactaaattgaatctattt 105817
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9080028 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 9080087 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 9080088 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 9080147 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9080148 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 9080207 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 9080208 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 9080267 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 9080268 agattggatctatccggctgcact 9080291 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 9079737 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 9079794 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 9079795 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 9079854 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 9079855 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 9079914 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 9079915 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 9079969 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 9079970 agaaattactaaattgaatctattt 9079994
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Minus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19961930 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 19961871 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 19961870 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 19961811 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19961810 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 19961751 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 19961750 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 19961691 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 19961690 agattggatctatccggctgcact 19961667 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10324526 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 10324585 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 10324586 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 10324645 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10324646 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 10324705 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 10324706 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 10324765 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 10324766 agattggatctatccggctgcact 10324789 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Minus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 19962221 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 19962164 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 19962163 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 19962104 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 19962103 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 19962044 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 19962043 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 19961989 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 19961988 agaaattactaaattgaatctattt 19961964 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 10324235 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 10324292 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 10324293 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 10324352 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 10324353 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 10324412 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 10324413 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 10324467 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 10324468 agaaattactaaattgaatctattt 10324492
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24113 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 24172 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 24173 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 24232 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24233 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 24292 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 24293 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 24352 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 24353 agattggatctatccggctgcact 24376 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 23822 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 23879 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 23880 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 23939 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 23940 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 23999 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 24000 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 24054 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 24055 agaaattactaaattgaatctattt 24079
>dbj|AK121120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074F07, full insert sequence Length = 3220 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2287 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 2346 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2347 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 2406 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2407 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 2466 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2467 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 2526 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 2527 agattggatctatccggctgcact 2550 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 1996 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 2053 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 2054 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 2113 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2114 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 2173 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 2174 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 2228 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 2229 agaaattactaaattgaatctattt 2253
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Minus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19973206 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 19973147 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 19973146 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 19973087 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19973086 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 19973027 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 19973026 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 19972967 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 19972966 agattggatctatccggctgcact 19972943 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10330565 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 10330624 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 10330625 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 10330684 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10330685 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 10330744 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 10330745 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 10330804 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 10330805 agattggatctatccggctgcact 10330828 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Minus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 19973497 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 19973440 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 19973439 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 19973380 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 19973379 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 19973320 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 19973319 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 19973265 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 19973264 agaaattactaaattgaatctattt 19973240 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 10330274 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 10330331 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 10330332 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 10330391 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 10330392 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 10330451 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 10330452 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 10330506 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 10330507 agaaattactaaattgaatctattt 10330531
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 418 bits (211), Expect = e-114 Identities = 247/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32603 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 32662 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32663 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 32722 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32723 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 32782 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 32783 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 32842 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 32843 agattggatctatccggctgcact 32866 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 32312 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 32369 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 32370 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 32429 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32430 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 32489 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 32490 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 32544 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 32545 agaaattactaaattgaatctattt 32569
>dbj|AK110794.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-D06, full insert sequence Length = 1537 Score = 410 bits (207), Expect = e-111 Identities = 246/264 (93%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 81 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 82 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 141 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 142 ctgggagtttcgggcttgataccgatattttagcaacaaatctaataaatctaactgtag 201 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 202 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 261 Query: 538 agattggatctatccggctgcact 561 |||||||||||||||||||||||| Sbjct: 262 agattggatctatccggctgcact 285
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 408 bits (206), Expect = e-111 Identities = 251/271 (92%) Strand = Plus / Plus Query: 291 ccgatcaaaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtccta 350 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 97153 ccgatcaaaaaaggacgagcgaagtaagtgatcgaaaaactttcttctttgttcgtccta 97212 Query: 351 tctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactgg 410 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 97213 tctataagaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactgg 97272 Query: 411 ccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatcta 470 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97273 ccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatcta 97332 Query: 471 actgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctattt 530 ||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 97333 actgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgtctattt 97392 Query: 531 caagaatagattggatctatccggctgcact 561 ||||||||||||||||||||||||||||||| Sbjct: 97393 caagaatagattggatctatccggctgcact 97423 Score = 224 bits (113), Expect = 2e-55 Identities = 182/204 (89%), Gaps = 6/204 (2%) Strand = Plus / Plus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 96933 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 96992 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 96993 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 97047 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||| Sbjct: 97048 tttcaacaaaggagatctttcacaggtcaaacgagacctaagatttaatctaaaagaaat 97107 Query: 260 tactagattgaatctatttgcatt 283 || ||||||||||||||||||||| Sbjct: 97108 tattagattgaatctatttgcatt 97131
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 408 bits (206), Expect = e-111 Identities = 251/271 (92%) Strand = Plus / Plus Query: 291 ccgatcaaaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtccta 350 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 35526 ccgatcaaaaaaggacgagcgaagtaagtgatcgaaaaactttcttctttgttcgtccta 35585 Query: 351 tctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactgg 410 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 35586 tctataagaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactgg 35645 Query: 411 ccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatcta 470 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35646 ccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatcta 35705 Query: 471 actgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctattt 530 ||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 35706 actgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgtctattt 35765 Query: 531 caagaatagattggatctatccggctgcact 561 ||||||||||||||||||||||||||||||| Sbjct: 35766 caagaatagattggatctatccggctgcact 35796 Score = 224 bits (113), Expect = 2e-55 Identities = 182/204 (89%), Gaps = 6/204 (2%) Strand = Plus / Plus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 35306 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 35365 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 35366 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 35420 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||| Sbjct: 35421 tttcaacaaaggagatctttcacaggtcaaacgagacctaagatttaatctaaaagaaat 35480 Query: 260 tactagattgaatctatttgcatt 283 || ||||||||||||||||||||| Sbjct: 35481 tattagattgaatctatttgcatt 35504
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 404 bits (204), Expect = e-109 Identities = 247/265 (93%), Gaps = 1/265 (0%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaa-gtgatcgaaaaactttgttctttgttcgtcctatctata 356 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 32669 aaaaagggcgagcgaagtaaagtgatcgaaaaactttgttctttgttcgtcctatctata 32728 Query: 357 agaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatcc 416 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 32729 agaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatcc 32788 Query: 417 gctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgta 476 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32789 gctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgta 32848 Query: 477 gtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaa 536 ||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct: 32849 gtggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaa 32908 Query: 537 tagattggatctatccggctgcact 561 ||||||||||||||||||||||||| Sbjct: 32909 tagattggatctatccggctgcact 32933 Score = 182 bits (92), Expect = 8e-43 Identities = 225/265 (84%), Gaps = 9/265 (3%) Strand = Plus / Plus Query: 16 tttactccta-tttattacttcctggaattatctatttatangngacagataataccgca 74 |||||||||| ||||||||| ||| || || ||||||||| | |||||| |||||| || Sbjct: 32378 tttactcctaatttattact-cctagagttttctatttat-ggggacagacaatacccca 32435 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | ||||| ||||| ||||| ||||| |||||||| |||||| ||||| |||| ||| Sbjct: 32436 ccccaggaatagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttc 32495 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 193 ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32496 ccgccctttgtttagggcagtggaaagtatttttccttttattttaggaattttgggaac 32555 Query: 194 ggaacatttcaacaaaggaagcctttcaccggtcaaacntgacctaagacttaatctaaa 253 |||||||||||||| | ||||||| |||||||| || ||||||||||||||||| Sbjct: 32556 -----atttcaacaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaa 32610 Query: 254 agaaattactagattgaatctattt 278 ||||||||||| ||||||||||||| Sbjct: 32611 agaaattactaaattgaatctattt 32635
>dbj|AP006963.1| Saccharum spontaneum chloroplast gene for RNA polymerase betaII subunit, partial cds, strain: Jw385, clone: SJw-33kb Length = 381 Score = 240 bits (121), Expect = 4e-60 Identities = 146/157 (92%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cactggccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaata 60 Query: 465 aatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgt 524 ||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 61 aatctaactgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgt 120 Query: 525 ctatttcaagaatagattggatctatccggctgcact 561 ||||||||||||||||||||||||||||||||||||| Sbjct: 121 ctatttcaagaatagattggatctatccggctgcact 157
>dbj|AP006962.1| Saccharum spontaneum chloroplast gene for RNA polymerase betaII subunit, partial cds, strain: Glagah, clone: SGl-33kb Length = 381 Score = 240 bits (121), Expect = 4e-60 Identities = 146/157 (92%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cactggccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaata 60 Query: 465 aatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgt 524 ||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 61 aatctaactgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgt 120 Query: 525 ctatttcaagaatagattggatctatccggctgcact 561 ||||||||||||||||||||||||||||||||||||| Sbjct: 121 ctatttcaagaatagattggatctatccggctgcact 157
>dbj|AP006961.1| Saccharum officinarum chloroplast gene for RNA polymerase betaII subunit, partial cds, strain: Fiji40, clone: OFi-33kb Length = 381 Score = 240 bits (121), Expect = 4e-60 Identities = 146/157 (92%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cactggccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaata 60 Query: 465 aatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgt 524 ||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 61 aatctaactgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgt 120 Query: 525 ctatttcaagaatagattggatctatccggctgcact 561 ||||||||||||||||||||||||||||||||||||| Sbjct: 121 ctatttcaagaatagattggatctatccggctgcact 157
>dbj|AP006960.1| Saccharum officinarum chloroplast gene for RNA polymerase betaII subunit, partial cds, strain: Badila, clone: OBa-33kb Length = 381 Score = 240 bits (121), Expect = 4e-60 Identities = 146/157 (92%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cactggccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaata 60 Query: 465 aatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgt 524 ||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 61 aatctaactgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgt 120 Query: 525 ctatttcaagaatagattggatctatccggctgcact 561 ||||||||||||||||||||||||||||||||||||| Sbjct: 121 ctatttcaagaatagattggatctatccggctgcact 157
>emb|AJ010573.1|HVU010573 Hordeum vulgare chloroplast gene encoding ATP synthase CFO subunit I, exon 1 (partial) and exon 2 Length = 962 Score = 212 bits (107), Expect = 9e-52 Identities = 123/131 (93%) Strand = Plus / Plus Query: 431 gcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtttt 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtttt 60 Query: 491 gannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctat 550 || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gattttttttggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctat 120 Query: 551 ccggctgcact 561 ||||||||||| Sbjct: 121 ccggctgcact 131
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 210 bits (106), Expect = 4e-51 Identities = 181/211 (85%) Strand = Plus / Minus Query: 351 tctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactgg 410 |||||||||||| |||||||||||||||||||| ||||||||| | ||||||| Sbjct: 13440 tctataagaggaaagcatatgaaaaatgtaaccgattctttcgtttccttgggtcactgg 13381 Query: 411 ccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatcta 470 |||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 13380 ccattcgctgggagtttcgggtttaataccgatattttagcaacaaatctaataaatcta 13321 Query: 471 actgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctattt 530 | ||||||| ||||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 13320 agtgtagtgcttggtgtattgatcttttttggaaagggagtgtgtgcgagttgtgtattt 13261 Query: 531 caagaatagattggatctatccggctgcact 561 ||||||||| |||||| | ||||||||||| Sbjct: 13260 caagaataggctggatccaaccggctgcact 13230
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 196 bits (99), Expect = 5e-47 Identities = 127/139 (91%) Strand = Plus / Plus Query: 423 agtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggtt 482 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 6646958 agtttcgggcttaataccaatattttagcaacaaatctaataaatctaactgtagtggtt 6647017 Query: 483 ggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaatagatt 542 ||||| |||| ||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 6647018 ggtgtattgatttattttggaaaaggagcgtgtgcgagttgtctatttcaagaatagatt 6647077 Query: 543 ggatctatccggctgcact 561 ||||||||||||||||||| Sbjct: 6647078 ggatctatccggctgcact 6647096
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 196 bits (99), Expect = 5e-47 Identities = 127/139 (91%) Strand = Plus / Plus Query: 423 agtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggtt 482 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 81333 agtttcgggcttaataccaatattttagcaacaaatctaataaatctaactgtagtggtt 81392 Query: 483 ggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaatagatt 542 ||||| |||| ||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 81393 ggtgtattgatttattttggaaaaggagcgtgtgcgagttgtctatttcaagaatagatt 81452 Query: 543 ggatctatccggctgcact 561 ||||||||||||||||||| Sbjct: 81453 ggatctatccggctgcact 81471
>ref|NM_195981.1| Oryza sativa (japonica cultivar-group) putative ATPase I subunit from chromosome 10 chloroplast insertion (OSJNBb0075K12.31), mRNA Length = 552 Score = 194 bits (98), Expect = 2e-46 Identities = 134/151 (88%) Strand = Plus / Plus Query: 369 atgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgctggcagtttc 428 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 1 atgaaaaatgtaacccattctttcgtttttttagctcactggccatccgctgggagtttc 60 Query: 429 gggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtt 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgta 120 Query: 489 ttgannnnnnnnggaaagggagtgtgtgcga 519 |||| ||||||||||||||||||| Sbjct: 121 ttgatttattttggaaagggagtgtgtgcga 151
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 192 bits (97), Expect = 9e-46 Identities = 160/186 (86%) Strand = Plus / Minus Query: 354 ataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggcca 413 |||||||||||||||||||||||| ||||| ||||||||| | |||||||||| Sbjct: 14696 ataagaggagagcatatgaaaaatctaaccgattctttcgtttttttgggtcactggcca 14637 Query: 414 tccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaact 473 ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct: 14636 tccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaatctaagt 14577 Query: 474 gtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaa 533 |||||| ||||||| |||| |||||||||||||||||||||||| |||||||| Sbjct: 14576 gtagtgcttggtgtattgatcttttttggaaagggagtgtgtgcgagttgtgtatttcaa 14517 Query: 534 gaatag 539 |||||| Sbjct: 14516 gaatag 14511
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 192 bits (97), Expect = 9e-46 Identities = 196/234 (83%) Strand = Plus / Minus Query: 328 aactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgtaacccatt 387 |||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||| ||| Sbjct: 14094 aactctgttctttgttagtcctatctataaggggagagcatatgaaaaatataaccgatt 14035 Query: 388 ctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaataccgatattt 447 |||| | | ||||||||||||||||| ||||||| | ||||||||||||||| Sbjct: 14034 cttttgtttccgtggggcactggccatccgctgggagtttcgagtttaataccgatattt 13975 Query: 448 tagcaacaaatctaataaatctaactgtagtggttggtgttttgannnnnnnnggaaagg 507 |||||||||||| ||||||||||| |||||| | ||||| |||| ||||||| Sbjct: 13974 tagcaacaaatccaataaatctaagcgtagtgctgggtgtattgattttctttggaaagg 13915 Query: 508 gagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcact 561 ||||||||||||||||| ||||||||||||| |||||| || ||||||||||| Sbjct: 13914 gagtgtgtgcgagttgtgtatttcaagaatacgttggatttaaccggctgcact 13861
>ref|NM_197455.1| Oryza sativa (japonica cultivar-group) ATPase I subunit (OSJNBa0034L04.43), mRNA Length = 552 Score = 188 bits (95), Expect = 1e-44 Identities = 115/124 (92%) Strand = Plus / Plus Query: 369 atgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgctggcagtttc 428 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 1 atgaaaaatgtaacccattctttcgtttttttagctcactggccatccgctgggagtttc 60 Query: 429 gggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtt 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgta 120 Query: 489 ttga 492 |||| Sbjct: 121 ttga 124
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 188 bits (95), Expect = 1e-44 Identities = 164/192 (85%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| |||||||||||||||||| ||||||||| | |||| Sbjct: 14651 ctatctataagaggagatcatatgaaaaatgtaaccgattctttcgtttccttgggtcac 14592 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| || |||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 14591 tggccatccgccgggggtttcgggtttaataccgatattttagcaacaaatccaataaat 14532 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 14531 ctaagtgtagtgcttggtgtattgatcttttttggaaagggagtgtgtgcgagttgttta 14472 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 14471 tttcaagaatag 14460
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 188 bits (95), Expect = 1e-44 Identities = 179/212 (84%) Strand = Plus / Minus Query: 328 aactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgtaacccatt 387 |||| ||||||||||| | | |||||||||||||||| |||||||||||| ||||| ||| Sbjct: 13168 aactctgttctttgttagccatatctataagaggagaacatatgaaaaatataaccgatt 13109 Query: 388 ctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaataccgatattt 447 |||||| | |||||||||| ||| || ||||||||| ||||||||||||||| Sbjct: 13108 ctttcgtttccttgggccactggccattcgccgggagtttcgggtttaataccgatattt 13049 Query: 448 tagcaacaaatctaataaatctaactgtagtggttggtgttttgannnnnnnnggaaagg 507 |||||||||||||||||||||||| ||||||| ||||||| |||| ||||||| Sbjct: 13048 tagcaacaaatctaataaatctaagtgtagtgcttggtgtattgatcttttttggaaagg 12989 Query: 508 gagtgtgtgcgagttgtctatttcaagaatag 539 ||||||||||||||||| |||||||||||||| Sbjct: 12988 gagtgtgtgcgagttgtgtatttcaagaatag 12957
>emb|X03775.1|CHSOATP1 Spinach plastid genes atpI-H-F for ATP synthase CF(O) subunits IV, III and I Length = 4066 Score = 184 bits (93), Expect = 2e-43 Identities = 168/198 (84%) Strand = Plus / Plus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 |||||||||||||||| |||||||||||||||||| ||||||||| | ||||| Sbjct: 2414 tatctataagaggagatcatatgaaaaatgtaaccgattctttcgttttcttgggtcact 2473 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2474 ggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaatc 2533 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 | | ||||||| ||||||| |||| |||||||||||||||||| ||||| ||| Sbjct: 2534 tcagtgtagtgcttggtgtattgatcttttttggaaagggagtgtgtgcgggttgtttat 2593 Query: 529 ttcaagaatagattggat 546 ||||| ||||| |||||| Sbjct: 2594 ttcaaaaataggttggat 2611
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 184 bits (93), Expect = 2e-43 Identities = 168/198 (84%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 |||||||||||||||| |||||||||||||||||| ||||||||| | ||||| Sbjct: 12109 tatctataagaggagatcatatgaaaaatgtaaccgattctttcgttttcttgggtcact 12050 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 12049 ggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaatc 11990 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 | | ||||||| ||||||| |||| |||||||||||||||||| ||||| ||| Sbjct: 11989 tcagtgtagtgcttggtgtattgatcttttttggaaagggagtgtgtgcgggttgtttat 11930 Query: 529 ttcaagaatagattggat 546 ||||| ||||| |||||| Sbjct: 11929 ttcaaaaataggttggat 11912
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 182 bits (92), Expect = 8e-43 Identities = 119/129 (92%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 433 ttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgttttga 492 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 40123 ttaataccgatattttagcaacaaatctaataaatttaactgtagtggttggtgttttga 40182 Query: 493 nnnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatcc 552 |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 40183 ttttttt-ggaaagggagtgtgtgtgagttgtctatttcaagaatagattggatctatcc 40241 Query: 553 ggctgcact 561 ||||||||| Sbjct: 40242 ggctgcact 40250
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 180 bits (91), Expect = 3e-42 Identities = 163/192 (84%) Strand = Plus / Plus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||| ||||||| |||||||||||||||||| ||||||||| | ||| Sbjct: 26925 ctatctatacgaggagatcatatgaaaaatgtaaccgattctttcgtttctttgggccac 26984 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 26985 tggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaat 27044 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| |||| || |||| |||||||||||||||||||||||| || Sbjct: 27045 ctaagtgtagtgcttggggtcttgatcttttttggaaagggagtgtgtgcgagttgttta 27104 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 27105 tttcaagaatag 27116
>gb|AY865171.1| Lactuca sativa chloroplast inversion region Length = 28722 Score = 180 bits (91), Expect = 3e-42 Identities = 163/192 (84%) Strand = Plus / Plus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||| ||||||| |||||||||||||||||| ||||||||| | ||| Sbjct: 20863 ctatctatacgaggagatcatatgaaaaatgtaaccgattctttcgtttctttgggccac 20922 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 20923 tggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaat 20982 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| |||| || |||| |||||||||||||||||||||||| || Sbjct: 20983 ctaagtgtagtgcttggggtcttgatcttttttggaaagggagtgtgtgcgagttgttta 21042 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 21043 tttcaagaatag 21054
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 180 bits (91), Expect = 3e-42 Identities = 163/192 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| |||||||||||||||||| ||||||||| | ||| Sbjct: 14237 ctatctataagaggagatcatatgaaaaatgtaaccgattctttcgtttctttgggccac 14178 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 14177 tggccgtccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaat 14118 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| |||| || |||| |||||||||||||||||||||||| || Sbjct: 14117 ctaagtgtagtgcttggggtattgatcttttttggaaagggagtgtgtgcgagttgttta 14058 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 14057 tttcaagaatag 14046
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 180 bits (91), Expect = 3e-42 Identities = 163/192 (84%) Strand = Plus / Plus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||| ||||||| |||||||||||||||||| ||||||||| | ||| Sbjct: 26925 ctatctatacgaggagatcatatgaaaaatgtaaccgattctttcgtttctttgggccac 26984 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 26985 tggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaat 27044 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| |||| || |||| |||||||||||||||||||||||| || Sbjct: 27045 ctaagtgtagtgcttggggtcttgatcttttttggaaagggagtgtgtgcgagttgttta 27104 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 27105 tttcaagaatag 27116
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 176 bits (89), Expect = 5e-41 Identities = 167/198 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13201 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13142 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13141 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 13082 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13081 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13022 Query: 528 tttcaagaatagattgga 545 |||||||||||| ||||| Sbjct: 13021 tttcaagaataggttgga 13004
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 176 bits (89), Expect = 5e-41 Identities = 167/198 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13064 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13005 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13004 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 12945 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 12944 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 12885 Query: 528 tttcaagaatagattgga 545 |||||||||||| ||||| Sbjct: 12884 tttcaagaataggttgga 12867
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 176 bits (89), Expect = 5e-41 Identities = 167/198 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13061 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13002 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13001 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 12942 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 12941 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 12882 Query: 528 tttcaagaatagattgga 545 |||||||||||| ||||| Sbjct: 12881 tttcaagaataggttgga 12864
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 176 bits (89), Expect = 5e-41 Identities = 167/198 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13082 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13023 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13022 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 12963 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 12962 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 12903 Query: 528 tttcaagaatagattgga 545 |||||||||||| ||||| Sbjct: 12902 tttcaagaataggttgga 12885
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 172 bits (87), Expect = 8e-40 Identities = 162/192 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13478 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13419 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13418 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 13359 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13358 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13299 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 13298 tttcaagaatag 13287
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 172 bits (87), Expect = 8e-40 Identities = 162/192 (84%) Strand = Plus / Plus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||| ||||||| |||||||||||||||||| ||||||||| | ||| Sbjct: 27038 ctatctatatgaggagatcatatgaaaaatgtaaccgattctttcgtttctttgggccac 27097 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 27098 tggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaat 27157 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| |||||| |||| || |||| |||||||||||||||||||||||| || Sbjct: 27158 ctaagtgtagtacttggggtcttgatcttttttggaaagggagtgtgtgcgagttgttta 27217 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 27218 tttcaagaatag 27229
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 172 bits (87), Expect = 8e-40 Identities = 177/212 (83%) Strand = Plus / Plus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 |||||||||||||||| |||||||||||||||| ||||||||| | ||||| Sbjct: 53328 tatctataagaggagattgtatgaaaaatgtaaccgattctttcgtttccttggttcact 53387 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 |||||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 53388 ggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaatc 53447 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 ||| |||||| ||||||| |||| |||||||||||||||||||||||| ||| Sbjct: 53448 taagcgtagtgcttggtgtattgatctgttttggaaagggagtgtgtgcgagttgtttat 53507 Query: 529 ttcaagaatagattggatctatccggctgcac 560 ||||||||||| |||| | | |||||||||| Sbjct: 53508 ttcaagaataggctggacccaaccggctgcac 53539
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 172 bits (87), Expect = 8e-40 Identities = 162/192 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13476 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13417 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13416 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 13357 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13356 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13297 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 13296 tttcaagaatag 13285
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 172 bits (87), Expect = 8e-40 Identities = 162/192 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13413 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13354 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13353 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 13294 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13293 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13234 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 13233 tttcaagaatag 13222
>gb|M10124.1|TOBCPATPB Tobacco chloroplast ATPase subunits I and III gene, complete cds, and ATPase subunit alpha, 5' end Length = 2550 Score = 172 bits (87), Expect = 8e-40 Identities = 162/192 (84%) Strand = Plus / Plus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 1126 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 1185 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 1186 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 1245 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 1246 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 1305 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 1306 tttcaagaatag 1317
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 168 bits (85), Expect = 1e-38 Identities = 166/198 (83%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| ||| |||||||||||| | ||| Sbjct: 13200 ctatctataagaggagatcatatgaaaaacgtaccccattctttcgtttctttgggccac 13141 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||| ||||||||||||||| ||||||| Sbjct: 13140 tggccatctgccgggagtttcgggtttaataccgattttttagcaacaaatccaataaat 13081 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13080 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13021 Query: 528 tttcaagaatagattgga 545 |||||||||||| ||||| Sbjct: 13020 tttcaagaataggttgga 13003
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 167 bits (84), Expect = 5e-38 Identities = 153/181 (84%) Strand = Plus / Minus Query: 359 aggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgc 418 |||||| |||||||||||||||||| ||||||||| | ||||||||||||||| Sbjct: 13300 aggagatcatatgaaaaatgtaaccgattctttcgtttccttgggtcactggccatccgc 13241 Query: 419 tggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagt 478 || ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 13240 cgggagtttcggggttaataccgatattttagcaacaaatccaataaatctaagtgtagt 13181 Query: 479 ggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaata 538 ||||||| |||| |||||||||||||||||||||||| ||||||||||||| Sbjct: 13180 ccttggtgtattgatcttttttggaaagggagtgtgtgcgagttgtttatttcaagaata 13121 Query: 539 g 539 | Sbjct: 13120 g 13120
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 165 bits (83), Expect = 2e-37 Identities = 161/192 (83%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13261 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13202 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13201 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 13142 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| |||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13141 ctaagtgtagtccttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13082 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 13081 tttcaagaatag 13070
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 161 bits (81), Expect = 3e-36 Identities = 174/210 (82%) Strand = Plus / Minus Query: 338 tttgttcgtcctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnn 397 |||||| |||||||||| |||||||||| ||||||||||||||||| | ||||||| Sbjct: 16371 tttgttagtcctatctagaagaggagagtatatgaaaaatgtaaccgactctttcgtttc 16312 Query: 398 nnnagctcactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaa 457 | ||||||||||| || || |||||||| |||||||||||||||| |||||||| Sbjct: 16311 cttgggccactggccatctgccggaagtttcggatttaataccgatatttttgcaacaaa 16252 Query: 458 tctaataaatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgc 517 || ||||||||||| ||| ||| ||||||| |||| ||||||||||||||||| Sbjct: 16251 tccaataaatctaagtgtggtgcttggtgtgttgatttttttcggaaagggagtgtgtgc 16192 Query: 518 gagttgtctatttcaagaatagattggatc 547 ||||||| |||||||||||||| ||||||| Sbjct: 16191 gagttgtttatttcaagaataggttggatc 16162
>dbj|AB189069.1| Silene latifolia chloroplast DNA, partial sequence, rpoB gene to rps7 gene region Length = 47249 Score = 161 bits (81), Expect = 3e-36 Identities = 165/198 (83%) Strand = Plus / Plus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 ||||||||| |||||| | |||||||||||||||| ||||||||| | ||||| Sbjct: 14617 tatctataaaaggagatcttatgaaaaatgtaaccgattctttcgttttattgggtcact 14676 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 |||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 14677 ggccatccgccgagagtttcggggttaataccgatattttagcaacaaatctaataaatc 14736 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 | | |||||| ||||||| |||| |||||||||||||||||| ||||| ||| Sbjct: 14737 tcagcgtagtgattggtgtattgatcttttttggaaagggagtgtgtgcgggttgtttat 14796 Query: 529 ttcaagaatagattggat 546 ||||||||||| |||||| Sbjct: 14797 ttcaagaataggttggat 14814
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 151 bits (76), Expect = 3e-33 Identities = 157/189 (83%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 |||||||||||||||| |||||||||||||||| ||||||||| | ||||| Sbjct: 14210 tatctataagaggagattgtatgaaaaatgtaaccgattctttcgtttccttgggtcact 14151 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 ||||||| || || |||||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 14150 ggccatcggccgggagtttcggatttaataccgatattttagcaacaaatccaataaatc 14091 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 ||| |||||| ||||||| |||| |||||||||||||||||||||||| ||| Sbjct: 14090 taagtgtagtccttggtgtattgatcttttttggaaagggagtgtgtgcgagttgtttat 14031 Query: 529 ttcaagaat 537 ||||||||| Sbjct: 14030 ttcaagaat 14022
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 141 bits (71), Expect = 3e-30 Identities = 138/157 (87%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 16 tttactcctatttattacttcctggaattatctatttatangngacagataataccgcat 75 ||||||||||||||||||| ||||||||||||||||||| | |||||| |||||| || Sbjct: 269389 tttactcctatttattact-cctggaattatctatttat-cgggacagacaataccccac 269332 Query: 76 tctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcc 135 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| |||| Sbjct: 269331 cccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttcc 269272 Query: 136 cgtccttagtttaggaaagtggaaagt-tttttcctt 171 |||||||||||||||| |||||||||| ||||||||| Sbjct: 269271 cgtccttagtttaggacagtggaaagtctttttcctt 269235
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 141 bits (71), Expect = 3e-30 Identities = 138/157 (87%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 16 tttactcctatttattacttcctggaattatctatttatangngacagataataccgcat 75 ||||||||||||||||||| ||||||||||||||||||| | |||||| |||||| || Sbjct: 268580 tttactcctatttattact-cctggaattatctatttat-cgggacagacaataccccac 268523 Query: 76 tctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcc 135 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| |||| Sbjct: 268522 cccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttcc 268463 Query: 136 cgtccttagtttaggaaagtggaaagt-tttttcctt 171 |||||||||||||||| |||||||||| ||||||||| Sbjct: 268462 cgtccttagtttaggacagtggaaagtctttttcctt 268426
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 141 bits (71), Expect = 3e-30 Identities = 138/157 (87%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 16 tttactcctatttattacttcctggaattatctatttatangngacagataataccgcat 75 ||||||||||||||||||| ||||||||||||||||||| | |||||| |||||| || Sbjct: 268577 tttactcctatttattact-cctggaattatctatttat-cgggacagacaataccccac 268520 Query: 76 tctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcc 135 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| |||| Sbjct: 268519 cccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttcc 268460 Query: 136 cgtccttagtttaggaaagtggaaagt-tttttcctt 171 |||||||||||||||| |||||||||| ||||||||| Sbjct: 268459 cgtccttagtttaggacagtggaaagtctttttcctt 268423
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 141 bits (71), Expect = 3e-30 Identities = 138/157 (87%), Gaps = 3/157 (1%) Strand = Plus / Plus Query: 16 tttactcctatttattacttcctggaattatctatttatangngacagataataccgcat 75 ||||||||||||||||||| ||||||||||||||||||| | |||||| |||||| || Sbjct: 20691126 tttactcctatttattact-cctggaattatctatttat-cgggacagacaataccccac 20691183 Query: 76 tctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcc 135 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| |||| Sbjct: 20691184 cccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttcc 20691243 Query: 136 cgtccttagtttaggaaagtggaaagt-tttttcctt 171 |||||||||||||||| |||||||||| ||||||||| Sbjct: 20691244 cgtccttagtttaggacagtggaaagtctttttcctt 20691280
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 141 bits (71), Expect = 3e-30 Identities = 124/143 (86%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 406 actggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataa 465 ||||||||||||| || ||||||||| || |||||||||||||||||||||||||||||| Sbjct: 75565 actggccatccgccggaagtttcgggtttgataccgatattttagcaacaaatctaataa 75506 Query: 466 atctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtc 525 |||||| ||||||| | ||||| || | |||||||||||||||||||||||| Sbjct: 75505 atctaagtgtagtgctaggtgtattaattttttttggaaagggagtgtgtgcgagttgtt 75446 Query: 526 tatttc-aagaatagattggatc 547 |||||| |||||||||||||||| Sbjct: 75445 tatttcaaagaatagattggatc 75423
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 141 bits (71), Expect = 3e-30 Identities = 138/157 (87%), Gaps = 3/157 (1%) Strand = Plus / Plus Query: 16 tttactcctatttattacttcctggaattatctatttatangngacagataataccgcat 75 ||||||||||||||||||| ||||||||||||||||||| | |||||| |||||| || Sbjct: 20617340 tttactcctatttattact-cctggaattatctatttat-cgggacagacaataccccac 20617397 Query: 76 tctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcc 135 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| |||| Sbjct: 20617398 cccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttcc 20617457 Query: 136 cgtccttagtttaggaaagtggaaagt-tttttcctt 171 |||||||||||||||| |||||||||| ||||||||| Sbjct: 20617458 cgtccttagtttaggacagtggaaagtctttttcctt 20617494
>emb|AL713949.4|CNS07YPS Oryza sativa chromosome 12, . BAC OJ1521_B04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113752 Score = 141 bits (71), Expect = 3e-30 Identities = 138/157 (87%), Gaps = 3/157 (1%) Strand = Plus / Plus Query: 16 tttactcctatttattacttcctggaattatctatttatangngacagataataccgcat 75 ||||||||||||||||||| ||||||||||||||||||| | |||||| |||||| || Sbjct: 101788 tttactcctatttattact-cctggaattatctatttat-cgggacagacaataccccac 101845 Query: 76 tctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcc 135 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| |||| Sbjct: 101846 cccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttcc 101905 Query: 136 cgtccttagtttaggaaagtggaaagt-tttttcctt 171 |||||||||||||||| |||||||||| ||||||||| Sbjct: 101906 cgtccttagtttaggacagtggaaagtctttttcctt 101942
>gb|U13703.1|BOU13703 Brassica oleracea chloroplast ATP synthase CF-0 subunit I (atpF) gene, partial cds Length = 293 Score = 141 bits (71), Expect = 3e-30 Identities = 152/184 (82%) Strand = Plus / Plus Query: 356 aagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatc 415 ||||||||| ||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 22 aagaggagattatatgaaaaatttaaccgattctttcgtttacttgggtcactggccatc 81 Query: 416 cgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgt 475 ||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 82 cgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaatctaagtgt 141 Query: 476 agtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaaga 535 ||| | ||||| |||| |||||||||||||||| ||||||| ||||||||| Sbjct: 142 agtcttcggtgtattgatcttttttggaaagggagtgtgtgtgagttgttcatttcaaga 201 Query: 536 atag 539 |||| Sbjct: 202 atag 205
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 141 bits (71), Expect = 3e-30 Identities = 138/157 (87%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 16 tttactcctatttattacttcctggaattatctatttatangngacagataataccgcat 75 ||||||||||||||||||| ||||||||||||||||||| | |||||| |||||| || Sbjct: 268444 tttactcctatttattact-cctggaattatctatttat-cgggacagacaataccccac 268387 Query: 76 tctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcc 135 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| |||| Sbjct: 268386 cccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttcc 268327 Query: 136 cgtccttagtttaggaaagtggaaagt-tttttcctt 171 |||||||||||||||| |||||||||| ||||||||| Sbjct: 268326 cgtccttagtttaggacagtggaaagtctttttcctt 268290
>dbj|D13098.1|RICMT02 Oryza sativa (japonica cultivar-group) mitochondrial atpH pseudogene, clone:pMTVSCT3 Length = 1584 Score = 141 bits (71), Expect = 3e-30 Identities = 138/157 (87%), Gaps = 3/157 (1%) Strand = Plus / Plus Query: 16 tttactcctatttattacttcctggaattatctatttatangngacagataataccgcat 75 ||||||||||||||||||| ||||||||||||||||||| | |||||| |||||| || Sbjct: 976 tttactcctatttattact-cctggaattatctatttat-cgggacagacaataccccac 1033 Query: 76 tctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcc 135 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| |||| Sbjct: 1034 cccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttcc 1093 Query: 136 cgtccttagtttaggaaagtggaaagt-tttttcctt 171 |||||||||||||||| |||||||||| ||||||||| Sbjct: 1094 cgtccttagtttaggacagtggaaagtctttttcctt 1130
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 133 bits (67), Expect = 7e-28 Identities = 151/184 (82%) Strand = Plus / Minus Query: 356 aagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatc 415 ||||||||| ||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 12485 aagaggagattatatgaaaaatttaaccgattctttcgtttacttgggtcactggccatc 12426 Query: 416 cgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgt 475 ||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 12425 cgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaatctaagtgt 12366 Query: 476 agtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaaga 535 ||| | ||||| |||| |||||||||||||||| ||||||| ||||||||| Sbjct: 12365 agtcttcggtgtattgatcttttttggaaagggagtgtgtgtgagttgttcatttcaaga 12306 Query: 536 atag 539 |||| Sbjct: 12305 atag 12302
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 133 bits (67), Expect = 7e-28 Identities = 123/143 (86%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 406 actggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataa 465 ||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 48542 actggccatccgccggaagtttcgggtttaataccgatattttagcaacaaatccaataa 48601 Query: 466 atctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtc 525 |||| | ||||||| | ||||| ||| |||||||||||||||||||||||| Sbjct: 48602 atcttagtgtagtgttaggtgtattggttttttttggaaagggagtgtgtgcgagttgtt 48661 Query: 526 tatttc-aagaatagattggatc 547 |||||| |||||||||||||||| Sbjct: 48662 tatttcaaagaatagattggatc 48684 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 361 gagagcatatgaaaaatgtaacccattctttc 392 |||| |||||||||||| ||||| |||||||| Sbjct: 48497 gagatcatatgaaaaatataaccgattctttc 48528
>gb|DQ069387.1| Nuphar advena ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 552 Score = 129 bits (65), Expect = 1e-26 Identities = 83/89 (93%) Strand = Plus / Plus Query: 404 tcactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaat 463 ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 36 tcactggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaat 95 Query: 464 aaatctaactgtagtggttggtgttttga 492 |||||||| ||||||| ||||||| |||| Sbjct: 96 aaatctaagtgtagtgcttggtgtattga 124
>gb|DQ069389.1| Typha latifolia ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 558 Score = 127 bits (64), Expect = 4e-26 Identities = 82/88 (93%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 37 cactggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaata 96 Query: 465 aatctaactgtagtggttggtgttttga 492 ||||||| ||||||| ||||||| |||| Sbjct: 97 aatctaagtgtagtgattggtgtattga 124
>gb|AY521596.1| Cucumis sativus isolate GY-14, chloroplast sequence Length = 16653 Score = 125 bits (63), Expect = 2e-25 Identities = 112/131 (85%) Strand = Plus / Minus Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 3343 tggccatccgccgagagtttcggatttaataccgatattttagcaacaaatccaataaat 3284 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| |||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 3283 ctaagcgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 3224 Query: 528 tttcaagaata 538 ||||||||||| Sbjct: 3223 tttcaagaata 3213 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttc 392 ||||||||| |||||| |||||||||||||||||| |||||||| Sbjct: 3402 tatctataaaaggagatcatatgaaaaatgtaaccgattctttc 3359
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 125 bits (63), Expect = 2e-25 Identities = 112/131 (85%) Strand = Plus / Minus Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13941 tggccatccgccgagagtttcggatttaataccgatattttagcaacaaatccaataaat 13882 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| |||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13881 ctaagcgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13822 Query: 528 tttcaagaata 538 ||||||||||| Sbjct: 13821 tttcaagaata 13811 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttc 392 ||||||||| |||||| |||||||||||||||||| |||||||| Sbjct: 14000 tatctataaaaggagatcatatgaaaaatgtaaccgattctttc 13957
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 125 bits (63), Expect = 2e-25 Identities = 112/131 (85%) Strand = Plus / Minus Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13933 tggccatccgccgagagtttcggatttaataccgatattttagcaacaaatccaataaat 13874 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| |||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13873 ctaagcgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13814 Query: 528 tttcaagaata 538 ||||||||||| Sbjct: 13813 tttcaagaata 13803 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttc 392 ||||||||| |||||| |||||||||||||||||| |||||||| Sbjct: 13992 tatctataaaaggagatcatatgaaaaatgtaaccgattctttc 13949
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 125 bits (63), Expect = 2e-25 Identities = 150/184 (81%) Strand = Plus / Minus Query: 356 aagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatc 415 ||||||||| ||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 12811 aagaggagattatatgaaaaatttaaccgattctttcgtttacttgggtcactggccatc 12752 Query: 416 cgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgt 475 ||| || |||||||| ||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 12751 cgccgggagtttcggatttaataccgatattttagcaacaaatccaataaatctaagtgt 12692 Query: 476 agtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaaga 535 ||| | ||||| |||| |||||||||||||||| ||||||| ||||||||| Sbjct: 12691 agttttcggtgtattgatcttttttggaaagggagtgtgtgtgagttgttcatttcaaga 12632 Query: 536 atag 539 |||| Sbjct: 12631 atag 12628
>gb|DQ069388.1| Ranunculus macranthus ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 564 Score = 123 bits (62), Expect = 7e-25 Identities = 108/126 (85%) Strand = Plus / Plus Query: 404 tcactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaat 463 ||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||| Sbjct: 36 tcactggccatccgccgggagtttcggatttaataccgatattttagcaacaaatccaat 95 Query: 464 aaatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttg 523 |||||||| |||||| ||||||| |||| ||||||||||||||||||||||| Sbjct: 96 aaatctaagtgtagtccttggtgtattgattttttttggaaagggagtgtgtgcgagttg 155 Query: 524 tctatt 529 | |||| Sbjct: 156 tttatt 161
>emb|X05917.1|CHPSATPC Pea plastid genes rps2, atpI, atpH, atpF, atpA, trnR and trnG coding for ribosomal protein S2, one CF(1) and three CF(O) subunits of ATP synthase and tRNA-Arg and tRNA-Gly Length = 5865 Score = 123 bits (62), Expect = 7e-25 Identities = 109/126 (86%), Gaps = 1/126 (0%) Strand = Plus / Plus Query: 423 agtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggtt 482 ||||||||| || |||||||||||||||||||||||||||||||||||| || |||| | Sbjct: 2553 agtttcgggtttgataccgatattttagcaacaaatctaataaatctaagtgcagtgcta 2612 Query: 483 ggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttc-aagaatagat 541 ||||| |||| |||||||||||||||||||||||| |||||| |||||||||| Sbjct: 2613 ggtgtattgattttttttggaaagggagtgtgtgcgagttgtttatttcaaagaatagat 2672 Query: 542 tggatc 547 |||||| Sbjct: 2673 tggatc 2678
>gb|M57711.1|PEACPATPH Pea chloroplast ATP synthase CF0 subunit III (atpH) gene, complete cds Length = 1332 Score = 123 bits (62), Expect = 7e-25 Identities = 109/126 (86%), Gaps = 1/126 (0%) Strand = Plus / Plus Query: 423 agtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggtt 482 ||||||||| || |||||||||||||||||||||||||||||||||||| || |||| | Sbjct: 1206 agtttcgggtttgataccgatattttagcaacaaatctaataaatctaagtgcagtgcta 1265 Query: 483 ggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttc-aagaatagat 541 ||||| |||| |||||||||||||||||||||||| |||||| |||||||||| Sbjct: 1266 ggtgtattgattttttttggaaagggagtgtgtgcgagttgtttatttcaaagaatagat 1325 Query: 542 tggatc 547 |||||| Sbjct: 1326 tggatc 1331
>emb|AJ010572.1|HVU010572 Hordeum vulgare chloroplast mRNA for ATP synthase CFO subunit I, partial Length = 130 Score = 123 bits (62), Expect = 7e-25 Identities = 62/62 (100%) Strand = Plus / Plus Query: 431 gcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtttt 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtttt 60 Query: 491 ga 492 || Sbjct: 61 ga 62
>ref|XM_481174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 949 Score = 121 bits (61), Expect = 3e-24 Identities = 64/65 (98%) Strand = Plus / Minus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 936 aaaaagggcgagcgaagtaagtgatcaaaaaactttgttctttgttcgtcctatctataa 877 Query: 358 gagga 362 ||||| Sbjct: 876 gagga 872
>gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genomic sequence, complete sequence Length = 138345 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 501 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18456 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 18515 Query: 561 t 561 | Sbjct: 18516 t 18516
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 501 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27318249 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 27318308 Query: 561 t 561 | Sbjct: 27318309 t 27318309 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 507 ggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggct 556 ||||||||||| | |||||||||| ||||||| ||||||||||||||||| Sbjct: 31554443 ggagtgtgtgcaaattgtctattttaagaatatattggatctatccggct 31554492 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 433 ttaataccgatattttagcaacaaatctaataaatctaactgtagtggttgg 484 |||||||| ||||||| | |||||||||||||||| ||||||| |||||||| Sbjct: 31554343 ttaataccaatatttttgtaacaaatctaataaatttaactgtggtggttgg 31554394
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 121 bits (61), Expect = 3e-24 Identities = 64/65 (98%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 10366377 aaaaagggcgagcgaagtaagtgatcaaaaaactttgttctttgttcgtcctatctataa 10366436 Query: 358 gagga 362 ||||| Sbjct: 10366437 gagga 10366441 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 163 tttttccttttattttaggaattttgggaac 193 ||||||||||||||||||||||||||||||| Sbjct: 3319432 tttttccttttattttaggaattttgggaac 3319402
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 3e-24 Identities = 61/61 (100%) Strand = Plus / Plus Query: 501 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27409572 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 27409631 Query: 561 t 561 | Sbjct: 27409632 t 27409632 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 507 ggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggct 556 ||||||||||| | |||||||||| ||||||| ||||||||||||||||| Sbjct: 31644949 ggagtgtgtgcaaattgtctattttaagaatatattggatctatccggct 31644998 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 433 ttaataccgatattttagcaacaaatctaataaatctaactgtagtggttgg 484 |||||||| ||||||| | |||||||||||||||| ||||||| |||||||| Sbjct: 31644849 ttaataccaatatttttgtaacaaatctaataaatttaactgtggtggttgg 31644900
>dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091D16 Length = 174222 Score = 121 bits (61), Expect = 3e-24 Identities = 64/65 (98%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 67335 aaaaagggcgagcgaagtaagtgatcaaaaaactttgttctttgttcgtcctatctataa 67394 Query: 358 gagga 362 ||||| Sbjct: 67395 gagga 67399
>dbj|AK108117.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C06, full insert sequence Length = 949 Score = 121 bits (61), Expect = 3e-24 Identities = 64/65 (98%) Strand = Plus / Minus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 936 aaaaagggcgagcgaagtaagtgatcaaaaaactttgttctttgttcgtcctatctataa 877 Query: 358 gagga 362 ||||| Sbjct: 876 gagga 872
>gb|DQ069385.1| Acorus americanus ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 552 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 37 cactggccattcgccgggagtttcgggtttaataccgatattttagcaacaaatctaata 96 Query: 465 aatctaactgtagtggttggtgttttga 492 ||||||| ||||||| ||||||| |||| Sbjct: 97 aatctaagtgtagtgcttggtgtattga 124
>emb|AJ971663.1| Arabidopsis thaliana chloroplast partial atpF gene for ATPase I subu nit, exon 1, strain Wassilewskija (Ws-2) Length = 388 Score = 119 bits (60), Expect = 1e-23 Identities = 115/136 (84%) Strand = Plus / Plus Query: 404 tcactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaat 463 ||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||| Sbjct: 19 tcactggccatccgccgggagtttcggatttaataccgatattttagcaacaaatccaat 78 Query: 464 aaatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttg 523 |||||||| |||||| | ||||| |||| |||||||||||||||| |||||| Sbjct: 79 aaatctaagtgtagttttcggtgtattgatcttttttggaaagggagtgtgtgtgagttg 138 Query: 524 tctatttcaagaatag 539 | ||||||||||||| Sbjct: 139 ttcatttcaagaatag 154
>emb|AJ971662.1| Arabidopsis thaliana chloroplast partial atpF gene for ATPase I subu nit, exon 1, strain Cape Verde Islands (Cvi-0) Length = 384 Score = 119 bits (60), Expect = 1e-23 Identities = 115/136 (84%) Strand = Plus / Plus Query: 404 tcactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaat 463 ||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||| Sbjct: 15 tcactggccatccgccgggagtttcggatttaataccgatattttagcaacaaatccaat 74 Query: 464 aaatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttg 523 |||||||| |||||| | ||||| |||| |||||||||||||||| |||||| Sbjct: 75 aaatctaagtgtagttttcggtgtattgatcttttttggaaagggagtgtgtgtgagttg 134 Query: 524 tctatttcaagaatag 539 | ||||||||||||| Sbjct: 135 ttcatttcaagaatag 150
>dbj|AB098250.1| Nicotiana tomentosiformis atpF gene for ATP synthase I subunit, partial cds Length = 145 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 ||||||||||| || || ||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 37 cactggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaata 96 Query: 465 aatctaactgtagtggttggtgttttga 492 ||||||| ||||||| ||||||| |||| Sbjct: 97 aatctaagtgtagtgcttggtgtattga 124
>dbj|AB098229.1| Nicotiana sylvestris atpF gene for ATP synthase I subunit, partial cds Length = 141 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 ||||||||||| || || ||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 37 cactggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaata 96 Query: 465 aatctaactgtagtggttggtgttttga 492 ||||||| ||||||| ||||||| |||| Sbjct: 97 aatctaagtgtagtgcttggtgtattga 124
>gb|DQ069390.1| Yucca schidigera ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 552 Score = 109 bits (55), Expect = 1e-20 Identities = 105/124 (84%) Strand = Plus / Plus Query: 369 atgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgctggcagtttc 428 ||||||||||||||| ||||||||| || || ||||||||||| || ||||| Sbjct: 1 atgaaaaatgtaaccgattctttcgtttccttaggccattggccatccgccgggagtttt 60 Query: 429 gggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtt 488 ||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| Sbjct: 61 gggtttaataccgatattttagcaacaaatccaataaatctaagtgtagtgcttggtgta 120 Query: 489 ttga 492 |||| Sbjct: 121 ttga 124
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 109 bits (55), Expect = 1e-20 Identities = 161/200 (80%), Gaps = 1/200 (0%) Strand = Plus / Plus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 |||| ||||||||||| |||||||||||| ||||| || ||||| | | ||| Sbjct: 47963 tatccataagaggagatcatatgaaaaatataaccgatcctttcccttgcttgggttact 48022 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 ||||||| || || |||||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 48023 ggccatctgccggaagtttcggatttaataccgatattttagcaacaaatccaataaatc 48082 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 ||| | ||||| | ||||| |||| |||||||||||||||||||||||| | | Sbjct: 48083 taagtatagtgataggtgtattgattttttttggaaagggagtgtgtgcgagttgtttct 48142 Query: 529 ttc-aagaatagattggatc 547 ||| || ||||||||||||| Sbjct: 48143 ttcaaaaaatagattggatc 48162
>gb|AY885260.1| Thinopyrum elongatum ATP synthase CF0 subunit III (atpH) gene, complete cds; chloroplast Length = 448 Score = 89.7 bits (45), Expect = 9e-15 Identities = 75/83 (90%), Gaps = 2/83 (2%) Strand = Plus / Plus Query: 1 caatactttatttaatttactcctatttattacttcctggaattatctatttatangnga 60 |||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| | || Sbjct: 355 caatactttatttaatttactcctatttatta-ttcttggaattctctatttat-cggga 412 Query: 61 cagataataccgcattctaggaa 83 | ||||||||| ||||||||||| Sbjct: 413 cggataataccccattctaggaa 435
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 77.8 bits (39), Expect = 3e-11 Identities = 152/185 (82%), Gaps = 9/185 (4%) Strand = Plus / Minus Query: 16 tttactcctatttattacttcctggaattatctatttatangngacagataataccgcat 75 |||| |||||||||||||| ||||||||| ||||||||| | ||||||||||||| || Sbjct: 5870043 tttaatcctatttattact-cctggaattttctatttat-ggggacagataatacctcac 5869986 Query: 76 tctaggaagggctgagttga-gtatgattaattt----agaagatatgctcgccttctta 130 |||||||| || | |||| | |||| |||||| || | ||||||| || |||| Sbjct: 5869985 cctaggaagagccgttttgaaggatgactaatttttagaggatatatgcttgctatcttc 5869926 Query: 131 tttcccgtccttagtttaggaaagtggaaagt--tttttccttttattttaggaattttg 188 ||||||||||| |||||||| |||| ||| | |||||||||||||||||||||||||| Sbjct: 5869925 cttcccgtcctttgtttaggatagtgaaaaatattttttccttttattttaggaattttg 5869866 Query: 189 ggaac 193 ||||| Sbjct: 5869865 ggaac 5869861
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 77.8 bits (39), Expect = 3e-11 Identities = 152/185 (82%), Gaps = 9/185 (4%) Strand = Plus / Minus Query: 16 tttactcctatttattacttcctggaattatctatttatangngacagataataccgcat 75 |||| |||||||||||||| ||||||||| ||||||||| | ||||||||||||| || Sbjct: 70818 tttaatcctatttattact-cctggaattttctatttat-ggggacagataatacctcac 70761 Query: 76 tctaggaagggctgagttga-gtatgattaattt----agaagatatgctcgccttctta 130 |||||||| || | |||| | |||| |||||| || | ||||||| || |||| Sbjct: 70760 cctaggaagagccgttttgaaggatgactaatttttagaggatatatgcttgctatcttc 70701 Query: 131 tttcccgtccttagtttaggaaagtggaaagt--tttttccttttattttaggaattttg 188 ||||||||||| |||||||| |||| ||| | |||||||||||||||||||||||||| Sbjct: 70700 cttcccgtcctttgtttaggatagtgaaaaatattttttccttttattttaggaattttg 70641 Query: 189 ggaac 193 ||||| Sbjct: 70640 ggaac 70636
>dbj|AK072439.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111C14, full insert sequence Length = 2720 Score = 77.8 bits (39), Expect = 3e-11 Identities = 152/185 (82%), Gaps = 9/185 (4%) Strand = Plus / Plus Query: 16 tttactcctatttattacttcctggaattatctatttatangngacagataataccgcat 75 |||| |||||||||||||| ||||||||| ||||||||| | ||||||||||||| || Sbjct: 921 tttaatcctatttattact-cctggaattttctatttat-ggggacagataatacctcac 978 Query: 76 tctaggaagggctgagttga-gtatgattaattt----agaagatatgctcgccttctta 130 |||||||| || | |||| | |||| |||||| || | ||||||| || |||| Sbjct: 979 cctaggaagagccgttttgaaggatgactaatttttagaggatatatgcttgctatcttc 1038 Query: 131 tttcccgtccttagtttaggaaagtggaaagt--tttttccttttattttaggaattttg 188 ||||||||||| |||||||| |||| ||| | |||||||||||||||||||||||||| Sbjct: 1039 cttcccgtcctttgtttaggatagtgaaaaatattttttccttttattttaggaattttg 1098 Query: 189 ggaac 193 ||||| Sbjct: 1099 ggaac 1103
>gb|DQ069386.1| Ginkgo biloba ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 567 Score = 75.8 bits (38), Expect = 1e-10 Identities = 87/106 (82%) Strand = Plus / Plus Query: 424 gtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttg 483 ||||||| |||||||| ||||||||| |||||||||||||||||||| ||| ||| ||| Sbjct: 56 gtttcggttttaataccaatattttaggaacaaatctaataaatctaagtgtggtgcttg 115 Query: 484 gtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatt 529 |||| ||| |||||||||||||||||| ||||| |||| Sbjct: 116 gtgtactgatctattttggaaagggagtgtgtgcgggttgtatatt 161
>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence Length = 150743 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 507 ggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggct 556 ||||||||||| | |||||||||| ||||||| ||||||||||||||||| Sbjct: 126224 ggagtgtgtgcaaattgtctattttaagaatatattggatctatccggct 126175 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 433 ttaataccgatattttagcaacaaatctaataaatctaactgtagtggttgg 484 |||||||| ||||||| | |||||||||||||||| ||||||| |||||||| Sbjct: 126324 ttaataccaatatttttgtaacaaatctaataaatttaactgtggtggttgg 126273
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence Length = 133449 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 507 ggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggct 556 ||||||||||| | |||||||||| ||||||| ||||||||||||||||| Sbjct: 38163 ggagtgtgtgcaaattgtctattttaagaatatattggatctatccggct 38114 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 433 ttaataccgatattttagcaacaaatctaataaatctaactgtagtggttgg 484 |||||||| ||||||| | |||||||||||||||| ||||||| |||||||| Sbjct: 38263 ttaataccaatatttttgtaacaaatctaataaatttaactgtggtggttgg 38212
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 163 tttttccttttattttaggaattttgggaac 193 ||||||||||||||||||||||||||||||| Sbjct: 96999 tttttccttttattttaggaattttgggaac 96969
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 501 ggaaagggagtgtgtgcgagttgtctatt 529 |||||||||||||||||||||||| |||| Sbjct: 12618 ggaaagggagtgtgtgcgagttgtatatt 12590 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaa 381 ||||||| || || ||||||||||||||||||| Sbjct: 12770 tatctatgaggggcgagcatatgaaaaatgtaa 12738
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 501 ggaaagggagtgtgtgcgagttgtctatt 529 |||||||||||||||||||||||| |||| Sbjct: 12840 ggaaagggagtgtgtgcgagttgtatatt 12812 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaa 381 ||||||| || ||||||| |||||||||||||| Sbjct: 12992 tatctatgaggggagagcgtatgaaaaatgtaa 12960
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 455 aaatctaataaatctaactgtagtggttggtg 486 ||||| ||||||||||||| |||||||||||| Sbjct: 349033 aaatcgaataaatctaactatagtggttggtg 349064
>gb|AC185956.1| Populus trichocarpa clone Pop1-93N08, complete sequence Length = 73786 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 156 ggaaagttttttccttttattttagg 181 ||||||| |||||||||||||||||| Sbjct: 32423 ggaaagtgttttccttttattttagg 32398
>emb|AL583855.10| Human DNA sequence from clone RP11-16P15 on chromosome 10 Contains the 5' end of the MBL2 gene for mannose-binding lectin (protein C) 2 soluble (opsonic defect), complete sequence Length = 8604 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 146 ttaggaaagtggaaagtttttt 167 |||||||||||||||||||||| Sbjct: 4989 ttaggaaagtggaaagtttttt 4968
>gb|AY835656.1| Liparis mucosus 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 482 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 gttttttccttttattttagg 181 ||||||||||||||||||||| Sbjct: 211 gttttttccttttattttagg 191
>gb|BC061457.1| Danio rerio potassium channel tetramerisation domain containing 10, mRNA (cDNA clone MGC:63846 IMAGE:3817604), complete cds Length = 3716 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 attttagcaacaaatctaata 464 ||||||||||||||||||||| Sbjct: 2312 attttagcaacaaatctaata 2332
>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence Length = 221754 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 7 tttatttaatttactcctatttatt 31 ||||||||||||| ||||||||||| Sbjct: 75532 tttatttaatttattcctatttatt 75556
>gb|AC146484.3| Pan troglodytes BAC clone CH251-454A18 from Y, complete sequence Length = 205077 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 372 aaaaatgtaacccattctttc 392 ||||||||||||||||||||| Sbjct: 37100 aaaaatgtaacccattctttc 37120
>emb|BX088723.4| Human DNA sequence from clone RP11-52E20 on chromosome X, complete sequence Length = 146782 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 ttttttccttttattttagga 182 ||||||||||||||||||||| Sbjct: 7278 ttttttccttttattttagga 7258
>emb|AL590072.7| Human DNA sequence from clone RP11-154J12 on chromosome 10, complete sequence Length = 112445 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 gattaatttagaagatatgct 120 ||||||||||||||||||||| Sbjct: 62625 gattaatttagaagatatgct 62605
>dbj|BS000561.1| Pan troglodytes chromosome Y clone:PTB-495J17, complete sequences Length = 130326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 aaaaatgtaacccattctttc 392 ||||||||||||||||||||| Sbjct: 59011 aaaaatgtaacccattctttc 58991
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 372 aaaaatgtaacccattctttc 392 ||||||||||||||||||||| Sbjct: 23064080 aaaaatgtaacccattctttc 23064100
>gb|AC093527.2| Homo sapiens chromosome 5 clone RP11-252A23, complete sequence Length = 191035 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 gcatatgaaaaatgtaaccca 385 ||||||||||||||||||||| Sbjct: 90463 gcatatgaaaaatgtaaccca 90443
>emb|BX510366.5| Zebrafish DNA sequence from clone DKEY-189P24 in linkage group 5, complete sequence Length = 179350 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 444 attttagcaacaaatctaata 464 ||||||||||||||||||||| Sbjct: 41686 attttagcaacaaatctaata 41666 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ttttagcaacaaatctaata 464 |||||||||||||||||||| Sbjct: 41913 ttttagcaacaaatctaata 41932
>gb|AC021085.3| Homo sapiens chromosome 5 clone CTC-573P17, complete sequence Length = 46105 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 gcatatgaaaaatgtaaccca 385 ||||||||||||||||||||| Sbjct: 44866 gcatatgaaaaatgtaaccca 44886
>gb|AC025761.5|AC025761 Homo sapiens chromosome 5 clone CTB-109C23, complete sequence Length = 112944 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 gcatatgaaaaatgtaaccca 385 ||||||||||||||||||||| Sbjct: 3291 gcatatgaaaaatgtaaccca 3311
>ref|NM_213478.1| Danio rerio potassium channel tetramerisation domain containing 10 (kctd10), mRNA Length = 3716 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 attttagcaacaaatctaata 464 ||||||||||||||||||||| Sbjct: 2312 attttagcaacaaatctaata 2332
>gb|AC010127.12| Homo sapiens BAC clone RP11-2I8 from 2, complete sequence Length = 190066 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ttccttttattttaggaattt 186 ||||||||||||||||||||| Sbjct: 128348 ttccttttattttaggaattt 128328
>emb|AL391749.4|CNS06C8I Human chromosome 14 DNA sequence BAC R-233L14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195007 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 aacaaatctaataaatctaac 472 ||||||||||||||||||||| Sbjct: 130772 aacaaatctaataaatctaac 130752
>gb|AY539045.2| Liparis mucosus 16S large subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 542 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 gttttttccttttattttagg 181 ||||||||||||||||||||| Sbjct: 259 gttttttccttttattttagg 239
>gb|AC133166.2| Mus musculus BAC clone RP24-186D13 from 1, complete sequence Length = 158206 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 7 tttatttaatttactcctatttatt 31 ||||||||||||| ||||||||||| Sbjct: 151252 tttatttaatttattcctatttatt 151276
>ref|NM_104534.1| Arabidopsis thaliana unknown protein AT1G56570 mRNA, complete cds Length = 1836 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 attttagcaacaaatctaat 463 |||||||||||||||||||| Sbjct: 136 attttagcaacaaatctaat 155
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 501 ggaaagggagtgtgtgcgagttgtctat 528 |||||||| |||||||||||| |||||| Sbjct: 12481 ggaaagggggtgtgtgcgagtcgtctat 12454
>ref|XM_519619.1| PREDICTED: Pan troglodytes similar to platelet-derived growth factor receptor-like protein; platelet-derived growth factor-beta-like tumor suppressor (LOC464010), mRNA Length = 1890 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tttattttaggaattttggg 190 |||||||||||||||||||| Sbjct: 1037 tttattttaggaattttggg 1018
>gb|U73916.1|LUU73916 Linum usitatissimum rust resistance protein M gene, complete cds Length = 6050 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agttttttccttttatttta 179 |||||||||||||||||||| Sbjct: 4701 agttttttccttttatttta 4720
>gb|AC150888.5| Bos taurus BAC CH240-475A10 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 186059 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 gaaaaactttgttctttgtt 343 |||||||||||||||||||| Sbjct: 64417 gaaaaactttgttctttgtt 64398
>gb|AC150284.1| Latimeria menadoensis clone VMRC4-44H8, complete sequence Length = 187607 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 aagtggaaagttttttcctt 171 |||||||||||||||||||| Sbjct: 109144 aagtggaaagttttttcctt 109163
>gb|AC150283.1| Latimeria menadoensis clone VMRC4-188C23, complete sequence Length = 171414 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 aagtggaaagttttttcctt 171 |||||||||||||||||||| Sbjct: 126640 aagtggaaagttttttcctt 126659
>gb|AY593587.1| Membracis tectigera MEMTE 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 308 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aagacttaatctaaaagaaa 258 |||||||||||||||||||| Sbjct: 177 aagacttaatctaaaagaaa 158
>gb|AY593583.1| Membracis tectigera MEMELEP 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 308 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aagacttaatctaaaagaaa 258 |||||||||||||||||||| Sbjct: 177 aagacttaatctaaaagaaa 158
>gb|AY593582.1| Membracis dorsata MEDO 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 308 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aagacttaatctaaaagaaa 258 |||||||||||||||||||| Sbjct: 177 aagacttaatctaaaagaaa 158
>gb|BC109657.1| Bos taurus golgi SNAP receptor complex member 1, mRNA (cDNA clone MGC:133734 IMAGE:8052166), complete cds Length = 1212 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agttttttccttttatttta 179 |||||||||||||||||||| Sbjct: 1176 agttttttccttttatttta 1195
>gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete sequence Length = 87839 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 ggaaagttttttccttttatttta 179 ||||||| |||||||||||||||| Sbjct: 29164 ggaaagtattttccttttatttta 29187
>ref|NM_001038525.1| Bos taurus golgi SNAP receptor complex member 1 (GOSR1), mRNA Length = 1212 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agttttttccttttatttta 179 |||||||||||||||||||| Sbjct: 1176 agttttttccttttatttta 1195
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 ttttccttttattttaggaa 183 |||||||||||||||||||| Sbjct: 99882 ttttccttttattttaggaa 99901
>emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 190101 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gaaaaatgtaacccattctt 390 |||||||||||||||||||| Sbjct: 95863 gaaaaatgtaacccattctt 95882
>emb|AL353802.14| Human DNA sequence from clone RP4-662P1 on chromosome 1p31.3-32.3 Contains part of the gene for InaD-like protein (INADL), complete sequence Length = 143226 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 ttttccttttattttaggaa 183 |||||||||||||||||||| Sbjct: 60817 ttttccttttattttaggaa 60836
>emb|AL139340.12| Human DNA sequence from clone RP11-7F3 on chromosome 10, complete sequence Length = 187316 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 ttttccttttattttaggaatttt 187 |||||||||||||||||| ||||| Sbjct: 85044 ttttccttttattttagggatttt 85021
>emb|AL022319.2|HS172B20 Human DNA sequence from clone RP1-172B20 on chromosome 22q12.3-13.1 Contains the 3' part of the CACNA1I gene for voltage-dependent calcium channel, alpha 1I subunit, ESTs, STSs, GSSs and a putative CpG island, complete sequence Length = 213721 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 tggaaagttttttccttttattttagga 182 ||||||||||||| ||||||||| |||| Sbjct: 178278 tggaaagtttttttcttttatttcagga 178305
>emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chromosome 4 Contains the 3' end of the Dbccr1 gene for deleted in bladder cancer chromosome region candidate 1 (human), complete sequence Length = 203865 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 acttaatctaaaagaaatta 261 |||||||||||||||||||| Sbjct: 91966 acttaatctaaaagaaatta 91947
>gb|AC010061.6| Drosophila melanogaster 3L BAC RP98-11F16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165318 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 attttagcaacaaatctaataaat 467 ||||| |||||||||||||||||| Sbjct: 64883 atttttgcaacaaatctaataaat 64906
>dbj|AB220466.1| Macaca fascicularis mRNA, clone QflA-15761: similar to Homo sapiens platelet-derived growth factor receptor-like (PDGFRL), mRNA, NM_006207.1 Length = 2250 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tttattttaggaattttggg 190 |||||||||||||||||||| Sbjct: 180 tttattttaggaattttggg 161
>gb|AC099782.2| Homo sapiens chromosome 3 clone RP11-852E15, complete sequence Length = 209772 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gttttttccttttattttag 180 |||||||||||||||||||| Sbjct: 78655 gttttttccttttattttag 78636
>gb|AC006232.4| Arabidopsis thaliana chromosome 2 clone F10A12 map B68, complete sequence Length = 90341 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 ttttccttttattttaggaatttt 187 |||| ||||||||||||||||||| Sbjct: 65179 tttttcttttattttaggaatttt 65202
>gb|U76370.1|LUU76370 Linum usitatissimum mutant rust resistance protein M-X39 gene, partial cds Length = 2216 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agttttttccttttatttta 179 |||||||||||||||||||| Sbjct: 867 agttttttccttttatttta 886
>emb|BX511250.8| Zebrafish DNA sequence from clone CH211-57K11 in linkage group 16, complete sequence Length = 189081 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 tttttccttttattttaggaattt 186 ||||| |||||||||||||||||| Sbjct: 39797 tttttgcttttattttaggaattt 39774
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ttttccttttattttaggaa 183 |||||||||||||||||||| Sbjct: 22352934 ttttccttttattttaggaa 22352915
>gb|AC011891.3|AC011891 Homo sapiens clone CTD-2320J21, complete sequence Length = 73481 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aagacttaatctaaaagaaa 258 |||||||||||||||||||| Sbjct: 50991 aagacttaatctaaaagaaa 50972
>gb|AC164979.2| Mus musculus BAC clone RP23-244J23 from chromosome 16, complete sequence Length = 202286 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 agattgaatctatttgcatt 283 |||||||||||||||||||| Sbjct: 46796 agattgaatctatttgcatt 46777
>gb|AC140918.1| Caenorhabditis briggsae cosmid CB020L07, complete sequence Length = 104788 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 ttttttccttttattttaggaatt 185 |||||||||||| ||||||||||| Sbjct: 74004 ttttttcctttttttttaggaatt 73981
>gb|AE000784.1| Borrelia burgdorferi B31 plasmid lp28-3, complete sequence Length = 28601 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 ttaatctaaaagaaattactagat 267 ||||||||||||||| |||||||| Sbjct: 14914 ttaatctaaaagaaaatactagat 14937
>gb|AC009323.4|AC009323 Arabidopsis thaliana chromosome I BAC F25P12 genomic sequence, complete sequence Length = 141748 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 attttagcaacaaatctaat 463 |||||||||||||||||||| Sbjct: 121406 attttagcaacaaatctaat 121387
>emb|CT027602.9| Mouse DNA sequence from clone RP24-359G24 on chromosome 16, complete sequence Length = 194283 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 agattgaatctatttgcatt 283 |||||||||||||||||||| Sbjct: 69248 agattgaatctatttgcatt 69229
>gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54 of 83 of the complete sequence Length = 271869 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 attttagcaacaaatctaataaat 467 ||||| |||||||||||||||||| Sbjct: 173334 atttttgcaacaaatctaataaat 173357
>gb|AY639959.1| Plasmodium coatneyi elongation factor Tu (TufA) gene, partial cds; apicoplast Length = 1154 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 ttatttaatttactcctatttatt 31 |||||||||||| ||||||||||| Sbjct: 602 ttatttaatttattcctatttatt 579
>dbj|AB088118.1| Mus musculus BRINP1 gene for BMP/retinoic acid-inducible neural-specific protein-1, exon 8, partial cds Length = 14938 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 acttaatctaaaagaaatta 261 |||||||||||||||||||| Sbjct: 7038 acttaatctaaaagaaatta 7019
>gb|AC005669.1|AC005669 Homo sapiens chromosome 3, clone hRPK.165_I_16, complete sequence Length = 176968 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 gttttttccttttattttag 180 |||||||||||||||||||| Sbjct: 14111 gttttttccttttattttag 14130
>gb|AY609716.1| Sus scrofa clone Clu_27406.scr.msk.p1.Contig1, mRNA sequence Length = 2201 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tttattttaggaattttggg 190 |||||||||||||||||||| Sbjct: 275 tttattttaggaattttggg 256
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ttttccttttattttaggaa 183 |||||||||||||||||||| Sbjct: 22662845 ttttccttttattttaggaa 22662826
>gb|AC146596.4| Mus musculus BAC clone RP24-175L7 from 13, complete sequence Length = 163780 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 ttttttccttttattttagg 181 |||||||||||||||||||| Sbjct: 55030 ttttttccttttattttagg 55049
>gb|AC160019.2| Gallus gallus BAC clone CH261-50H15 from chromosome unknown, complete sequence Length = 228494 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 cttagtttaggaaagtggaa 159 |||||||||||||||||||| Sbjct: 8378 cttagtttaggaaagtggaa 8397
>gb|AC158368.2| Gallus gallus BAC clone CH261-77E11 from chromosome unknown, complete sequence Length = 180657 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cttagtttaggaaagtggaa 159 |||||||||||||||||||| Sbjct: 58530 cttagtttaggaaagtggaa 58511
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 agggagtgtgtgcgagttgt 524 |||||||||||||||||||| Sbjct: 18311 agggagtgtgtgcgagttgt 18292
>dbj|AP006360.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT42D17, TM0108, complete sequence Length = 117124 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 aagttttttccttttatttt 178 |||||||||||||||||||| Sbjct: 11257 aagttttttccttttatttt 11238
>dbj|AP004516.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT04F23, TM0044b, complete sequence Length = 20786 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ggaaagtggaaagttttttc 168 |||||||||||||||||||| Sbjct: 1179 ggaaagtggaaagttttttc 1198
>emb|AL773586.6| Mouse DNA sequence from clone RP23-18P19 on chromosome 2, complete sequence Length = 208141 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 gaaattactagattgaatct 274 |||||||||||||||||||| Sbjct: 38759 gaaattactagattgaatct 38740
>emb|AL928966.3| Mouse DNA sequence from clone RP24-388A9 on chromosome 2, complete sequence Length = 173369 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 aagttttttccttttattttagga 182 ||||||| |||||||||||||||| Sbjct: 100759 aagttttatccttttattttagga 100782 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 aagttttttccttttattttagga 182 ||||||| |||||||||||||||| Sbjct: 74933 aagttttatccttttattttagga 74956 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,034,462 Number of Sequences: 3902068 Number of extensions: 6034462 Number of successful extensions: 137351 Number of sequences better than 10.0: 174 Number of HSP's better than 10.0 without gapping: 179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135976 Number of HSP's gapped (non-prelim): 1283 length of query: 561 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 538 effective length of database: 17,143,297,704 effective search space: 9223094164752 effective search space used: 9223094164752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
