Clone Name | rbasd24j22 |
---|---|
Clone Library Name | barley_pub |
>gb|AC114012.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence Length = 143925 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 279 cgaggttgtccatgccgaagacaccttccagc 310 ||||||| |||||||||||||| ||||||||| Sbjct: 101848 cgaggttatccatgccgaagacgccttccagc 101817
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 279 cgaggttgtccatgccgaagacaccttccagc 310 ||||||| |||||||||||||| ||||||||| Sbjct: 16236993 cgaggttatccatgccgaagacgccttccagc 16236962
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 279 cgaggttgtccatgccgaagacaccttccagc 310 ||||||| |||||||||||||| ||||||||| Sbjct: 16326975 cgaggttatccatgccgaagacgccttccagc 16326944
>dbj|AK064142.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B04, full insert sequence Length = 2789 Score = 46.1 bits (23), Expect = 0.090 Identities = 29/31 (93%) Strand = Plus / Minus Query: 280 gaggttgtccatgccgaagacaccttccagc 310 |||||| |||||||||||||| ||||||||| Sbjct: 2296 gaggttatccatgccgaagacgccttccagc 2266
>ref|XM_425651.1| PREDICTED: Gallus gallus similar to G protein-coupled receptor 83; G-protein coupled receptor 72 (LOC428093), mRNA Length = 1272 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 357 cagagaagatcagcaggggcaggac 381 |||||| |||||||||||||||||| Sbjct: 769 cagagatgatcagcaggggcaggac 745
>gb|AC092208.6| Homo sapiens BAC clone RP11-476O21 from 7, complete sequence Length = 135912 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 ttacttctcatttgaatctcatttt 139 |||||||||| |||||||||||||| Sbjct: 63767 ttacttctcacttgaatctcatttt 63791
>gb|AC146217.2| Pan troglodytes BAC clone RP43-33E1 from 7, complete sequence Length = 191426 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 ttacttctcatttgaatctcatttt 139 |||||||||| |||||||||||||| Sbjct: 185559 ttacttctcacttgaatctcatttt 185535
>gb|AC125151.4| Mus musculus BAC clone RP24-355K8 from chromosome 14, complete sequence Length = 202916 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 agcaggggcaggacaggtgt 387 |||||||||||||||||||| Sbjct: 63754 agcaggggcaggacaggtgt 63773
>gb|AC068607.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-392C14, complete sequence Length = 218081 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ccttccagcaccttgaaact 321 |||||||||||||||||||| Sbjct: 101661 ccttccagcaccttgaaact 101680
>gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome 14, complete sequence Length = 236917 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 agcaggggcaggacaggtgt 387 |||||||||||||||||||| Sbjct: 208953 agcaggggcaggacaggtgt 208972
>gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete sequence Length = 114664 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tcatttgaatctcattttaa 141 |||||||||||||||||||| Sbjct: 70818 tcatttgaatctcattttaa 70837
>gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete sequence Length = 125855 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcatttgaatctcattttaa 141 |||||||||||||||||||| Sbjct: 71262 tcatttgaatctcattttaa 71243
>emb|AL157896.9| Human DNA sequence from clone RP11-397C18 on chromosome 10 Contains the 3' end of a variant of the gene for a novel protein (FLJ10210) and the 3' end of a novel gene, complete sequence Length = 65664 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 tggcaaacttccttgcctgc 199 |||||||||||||||||||| Sbjct: 51597 tggcaaacttccttgcctgc 51616
>gb|AC121337.7| Homo sapiens 12 BAC RP11-96H19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 110110 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 agagaagatcagcaggggca 377 |||||||||||||||||||| Sbjct: 80657 agagaagatcagcaggggca 80638
>gb|AC130473.2| Homo sapiens chromosome 3 clone RP11-684D11, complete sequence Length = 50483 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tctcatttgaatctcatttt 139 |||||||||||||||||||| Sbjct: 7988 tctcatttgaatctcatttt 7969
>gb|AC115945.9| Mus musculus chromosome 3, clone RP24-555P13, complete sequence Length = 172240 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 caccttccagcaccttgaaa 319 |||||||||||||||||||| Sbjct: 99444 caccttccagcaccttgaaa 99425
>gb|AC171734.1| Lycopersicon esculentum chromosome 11 clone C11HBa0064J13, complete sequence Length = 118649 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tctcatttgaatctcatttt 139 |||||||||||||||||||| Sbjct: 82291 tctcatttgaatctcatttt 82310 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,099,428 Number of Sequences: 3902068 Number of extensions: 3099428 Number of successful extensions: 57496 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57436 Number of HSP's gapped (non-prelim): 60 length of query: 415 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 393 effective length of database: 17,147,199,772 effective search space: 6738849510396 effective search space used: 6738849510396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)