ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24j22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC114012.5| Oryza sativa (japonica cultivar-group) chromosome... 48 0.023
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.023
4dbj|AK064142.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.090
5ref|XM_425651.1| PREDICTED: Gallus gallus similar to G protein-c... 42 1.4
6gb|AC092208.6| Homo sapiens BAC clone RP11-476O21 from 7, comple... 42 1.4
7gb|AC146217.2| Pan troglodytes BAC clone RP43-33E1 from 7, compl... 42 1.4
8gb|AC125151.4| Mus musculus BAC clone RP24-355K8 from chromosome... 40 5.6
9gb|AC068607.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 5.6
10gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome... 40 5.6
11gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete s... 40 5.6
12gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete se... 40 5.6
13emb|AL157896.9| Human DNA sequence from clone RP11-397C18 on chr... 40 5.6
14gb|AC121337.7| Homo sapiens 12 BAC RP11-96H19 (Roswell Park Canc... 40 5.6
15gb|AC130473.2| Homo sapiens chromosome 3 clone RP11-684D11, comp... 40 5.6
16gb|AC115945.9| Mus musculus chromosome 3, clone RP24-555P13, com... 40 5.6
17gb|AC171734.1| Lycopersicon esculentum chromosome 11 clone C11HB... 40 5.6

>gb|AC114012.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11,
              complete sequence
          Length = 143925

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 279    cgaggttgtccatgccgaagacaccttccagc 310
              ||||||| |||||||||||||| |||||||||
Sbjct: 101848 cgaggttatccatgccgaagacgccttccagc 101817



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 279      cgaggttgtccatgccgaagacaccttccagc 310
                ||||||| |||||||||||||| |||||||||
Sbjct: 16236993 cgaggttatccatgccgaagacgccttccagc 16236962



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 279      cgaggttgtccatgccgaagacaccttccagc 310
                ||||||| |||||||||||||| |||||||||
Sbjct: 16326975 cgaggttatccatgccgaagacgccttccagc 16326944



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>dbj|AK064142.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B04, full
            insert sequence
          Length = 2789

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 280  gaggttgtccatgccgaagacaccttccagc 310
            |||||| |||||||||||||| |||||||||
Sbjct: 2296 gaggttatccatgccgaagacgccttccagc 2266



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>ref|XM_425651.1| PREDICTED: Gallus gallus similar to G protein-coupled receptor 83;
           G-protein coupled receptor 72 (LOC428093), mRNA
          Length = 1272

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 357 cagagaagatcagcaggggcaggac 381
           |||||| ||||||||||||||||||
Sbjct: 769 cagagatgatcagcaggggcaggac 745



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>gb|AC092208.6| Homo sapiens BAC clone RP11-476O21 from 7, complete sequence
          Length = 135912

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 115   ttacttctcatttgaatctcatttt 139
             |||||||||| ||||||||||||||
Sbjct: 63767 ttacttctcacttgaatctcatttt 63791



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>gb|AC146217.2| Pan troglodytes BAC clone RP43-33E1 from 7, complete sequence
          Length = 191426

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 115    ttacttctcatttgaatctcatttt 139
              |||||||||| ||||||||||||||
Sbjct: 185559 ttacttctcacttgaatctcatttt 185535



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>gb|AC125151.4| Mus musculus BAC clone RP24-355K8 from chromosome 14, complete sequence
          Length = 202916

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   agcaggggcaggacaggtgt 387
             ||||||||||||||||||||
Sbjct: 63754 agcaggggcaggacaggtgt 63773



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>gb|AC068607.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-392C14, complete
              sequence
          Length = 218081

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    ccttccagcaccttgaaact 321
              ||||||||||||||||||||
Sbjct: 101661 ccttccagcaccttgaaact 101680



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>gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome 14, complete sequence
          Length = 236917

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    agcaggggcaggacaggtgt 387
              ||||||||||||||||||||
Sbjct: 208953 agcaggggcaggacaggtgt 208972



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>gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete sequence
          Length = 114664

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   tcatttgaatctcattttaa 141
             ||||||||||||||||||||
Sbjct: 70818 tcatttgaatctcattttaa 70837



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>gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete sequence
          Length = 125855

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   tcatttgaatctcattttaa 141
             ||||||||||||||||||||
Sbjct: 71262 tcatttgaatctcattttaa 71243



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>emb|AL157896.9| Human DNA sequence from clone RP11-397C18 on chromosome 10 Contains the
             3' end of a variant of the gene for a novel protein
             (FLJ10210) and the 3' end of a novel gene, complete
             sequence
          Length = 65664

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tggcaaacttccttgcctgc 199
             ||||||||||||||||||||
Sbjct: 51597 tggcaaacttccttgcctgc 51616



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>gb|AC121337.7| Homo sapiens 12 BAC RP11-96H19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110110

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   agagaagatcagcaggggca 377
             ||||||||||||||||||||
Sbjct: 80657 agagaagatcagcaggggca 80638



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>gb|AC130473.2| Homo sapiens chromosome 3 clone RP11-684D11, complete sequence
          Length = 50483

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  tctcatttgaatctcatttt 139
            ||||||||||||||||||||
Sbjct: 7988 tctcatttgaatctcatttt 7969



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>gb|AC115945.9| Mus musculus chromosome 3, clone RP24-555P13, complete sequence
          Length = 172240

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   caccttccagcaccttgaaa 319
             ||||||||||||||||||||
Sbjct: 99444 caccttccagcaccttgaaa 99425



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>gb|AC171734.1| Lycopersicon esculentum chromosome 11 clone C11HBa0064J13, complete
             sequence
          Length = 118649

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   tctcatttgaatctcatttt 139
             ||||||||||||||||||||
Sbjct: 82291 tctcatttgaatctcatttt 82310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,099,428
Number of Sequences: 3902068
Number of extensions: 3099428
Number of successful extensions: 57496
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57436
Number of HSP's gapped (non-prelim): 60
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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