ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24j16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_422758.1| PREDICTED: Gallus gallus similar to hypothetical gene supported by AK045595 (LOC424951), mRNA Length = 2547 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Minus Query: 187 acggccaggctctccgccggcccc 210 |||||||||||||||||||||||| Sbjct: 791 acggccaggctctccgccggcccc 768 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Minus Query: 334 acggccaggctctccgccggcccc 357 |||||||||||||||||||||||| Sbjct: 791 acggccaggctctccgccggcccc 768
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Minus Query: 200 ccgccggccccgacgccgccggcgagatggcg 231 |||||| | ||||||||||||||||||||||| Sbjct: 13199865 ccgccgccgccgacgccgccggcgagatggcg 13199834 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 ctgtcgccgccaccgccgct 521 |||||||||||||||||||| Sbjct: 25576366 ctgtcgccgccaccgccgct 25576385
>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07, from chromosome 3, complete sequence Length = 151173 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 200 ccgccggccccgacgccgccggcgagatggcg 231 |||||| | ||||||||||||||||||||||| Sbjct: 26773 ccgccgccgccgacgccgccggcgagatggcg 26804
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Minus Query: 200 ccgccggccccgacgccgccggcgagatggcg 231 |||||| | ||||||||||||||||||||||| Sbjct: 13196640 ccgccgccgccgacgccgccggcgagatggcg 13196609 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 ctgtcgccgccaccgccgct 521 |||||||||||||||||||| Sbjct: 25667675 ctgtcgccgccaccgccgct 25667694
>dbj|AK069305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012D01, full insert sequence Length = 1835 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 200 ccgccggccccgacgccgccggcgagatggcg 231 |||||| | ||||||||||||||||||||||| Sbjct: 62 ccgccgccgccgacgccgccggcgagatggcg 93
>gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1739D07, from chromosome 3, complete sequence Length = 149539 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 200 ccgccggccccgacgccgccggcgagatggcg 231 |||||| | ||||||||||||||||||||||| Sbjct: 119976 ccgccgccgccgacgccgccggcgagatggcg 120007
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 200 ccgccggccccgacgccgccggc 222 ||||||||||||||||||||||| Sbjct: 3921615 ccgccggccccgacgccgccggc 3921593
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 200 ccgccggccccgacgccgccggc 222 ||||||||||||||||||||||| Sbjct: 110606 ccgccggccccgacgccgccggc 110584
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 503 tgtcgccgccaccgccgctgcgc 525 ||||||||||||||||||||||| Sbjct: 3036388 tgtcgccgccaccgccgctgcgc 3036410
>ref|NM_019377.1| Rattus norvegicus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (Ywhab), mRNA Length = 2756 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 502 ctgtcgccgccaccgccgctgc 523 |||||||||||||||||||||| Sbjct: 44 ctgtcgccgccaccgccgctgc 65
>gb|AY657148.1| Synthetic construct Peudomonas aeruginosa clone FLH033015.01F PA1228 gene, partial cds Length = 351 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 497 tgcccctgtcgccgccaccgccgctgcgcc 526 |||||||||| || |||||||||||||||| Sbjct: 156 tgcccctgtcacccccaccgccgctgcgcc 185
>gb|BC076502.1| Rattus norvegicus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide, mRNA (cDNA clone MGC:91711 IMAGE:7100393), complete cds Length = 2716 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 502 ctgtcgccgccaccgccgctgc 523 |||||||||||||||||||||| Sbjct: 38 ctgtcgccgccaccgccgctgc 59
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 506 cgccgccaccgccgctgcgccg 527 |||||||||||||||||||||| Sbjct: 1928130 cgccgccaccgccgctgcgccg 1928151
>gb|S55223.1| 14-3-3 protein beta subtype=putative protein kinase C regulatory protein [rats, brain, mRNA, 2666 nt] Length = 2666 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 502 ctgtcgccgccaccgccgctgc 523 |||||||||||||||||||||| Sbjct: 39 ctgtcgccgccaccgccgctgc 60
>gb|S83440.1| RNH-1=prepronerve growth factor homolog [rats, brain, hepatoma Kagura-2 cells, mRNA, 2756 nt] Length = 2756 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 502 ctgtcgccgccaccgccgctgc 523 |||||||||||||||||||||| Sbjct: 44 ctgtcgccgccaccgccgctgc 65
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 495 cttgcccctgtcgccgccaccgccgc 520 |||||||||||||||||| ||||||| Sbjct: 6217966 cttgcccctgtcgccgccgccgccgc 6217941
>gb|AE004552.1| Pseudomonas aeruginosa PAO1, section 113 of 529 of the complete genome Length = 11158 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Minus Query: 497 tgcccctgtcgccgccaccgccgctgcgcc 526 |||||||||| || |||||||||||||||| Sbjct: 5892 tgcccctgtcacccccaccgccgctgcgcc 5863
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 495 cttgcccctgtcgccgccaccgccgc 520 |||||||||||||||||| ||||||| Sbjct: 131785 cttgcccctgtcgccgccgccgccgc 131760
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 495 cttgcccctgtcgccgccaccgccgc 520 |||||||||||||||||| ||||||| Sbjct: 12042 cttgcccctgtcgccgccgccgccgc 12017
>dbj|AK063324.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H05, full insert sequence Length = 1808 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 495 cttgcccctgtcgccgccaccgccgc 520 |||||||||||||||||| ||||||| Sbjct: 1400 cttgcccctgtcgccgccgccgccgc 1375
>dbj|D17446.1| Rattus norvegicus mRNA for 14-3-3 protein beta-subtype, complete cds Length = 2666 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 502 ctgtcgccgccaccgccgctgc 523 |||||||||||||||||||||| Sbjct: 39 ctgtcgccgccaccgccgctgc 60
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 cgccgccaccgccgctgcgccggaa 530 ||||||||||||||||||| ||||| Sbjct: 1203274 cgccgccaccgccgctgcgacggaa 1203298
>ref|XM_463978.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1560 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ttcttcgtcgacgacgtcccc 170 ||||||||||||||||||||| Sbjct: 817 ttcttcgtcgacgacgtcccc 837
>ref|XM_462873.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 672 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 507 gccgccaccgccgctgcgccg 527 ||||||||||||||||||||| Sbjct: 599 gccgccaccgccgctgcgccg 579
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 cgccgccaccgccgctgcgccggaa 530 |||||||||||||||||||| |||| Sbjct: 4676101 cgccgccaccgccgctgcgctggaa 4676125
>gb|AC115948.12| Mus musculus chromosome 16, clone RP24-568J12, complete sequence Length = 212604 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 agattgtaagcctggatcctg 276 ||||||||||||||||||||| Sbjct: 166496 agattgtaagcctggatcctg 166516
>gb|AC117224.3| Mus musculus BAC clone RP23-356N8 from chromosome 16, complete sequence Length = 197831 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 agattgtaagcctggatcctg 276 ||||||||||||||||||||| Sbjct: 163188 agattgtaagcctggatcctg 163168
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 196 ctctccgccggccccgacgccgccg 220 |||||||||| |||||||||||||| Sbjct: 310263 ctctccgccgcccccgacgccgccg 310287
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 ccgacgccgccggcgagatgg 229 ||||||||||||||||||||| Sbjct: 1979572 ccgacgccgccggcgagatgg 1979552
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ttcttcgtcgacgacgtcccc 170 ||||||||||||||||||||| Sbjct: 1445659 ttcttcgtcgacgacgtcccc 1445679 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 cccctgtcgccgccaccgcc 518 |||||||||||||||||||| Sbjct: 3207052 cccctgtcgccgccaccgcc 3207033 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 ccggccccgacgtcgccggcgaga 373 ||||| |||||||||||||||||| Sbjct: 1237711 ccggctccgacgtcgccggcgaga 1237734
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 507 gccgccaccgccgctgcgccg 527 ||||||||||||||||||||| Sbjct: 14753003 gccgccaccgccgctgcgccg 14752983 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 gtcgccgccaccgccgctgc 523 |||||||||||||||||||| Sbjct: 28565452 gtcgccgccaccgccgctgc 28565433 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 ctgtcgccgccaccgccgct 521 |||||||||||||||||||| Sbjct: 27465140 ctgtcgccgccaccgccgct 27465121
>dbj|AB196974.1| Sagittaria pygmaea SpXTH1 mRNA for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1101 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ttcttcgtcgacgacgtcccc 170 ||||||||||||||||||||| Sbjct: 620 ttcttcgtcgacgacgtcccc 640
>gb|AE004806.1| Pseudomonas aeruginosa PAO1, section 367 of 529 of the complete genome Length = 10506 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 201 cgccggccccgacgccgccggcgag 225 |||||||||||||||||||| |||| Sbjct: 8932 cgccggccccgacgccgccgccgag 8956
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ttcttcgtcgacgacgtcccc 170 ||||||||||||||||||||| Sbjct: 126931 ttcttcgtcgacgacgtcccc 126951
>dbj|AP003257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460H02 Length = 155012 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 507 gccgccaccgccgctgcgccg 527 ||||||||||||||||||||| Sbjct: 122103 gccgccaccgccgctgcgccg 122083
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0576F08 Length = 135314 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ttcttcgtcgacgacgtcccc 170 ||||||||||||||||||||| Sbjct: 9080 ttcttcgtcgacgacgtcccc 9100
>dbj|AK073018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H23, full insert sequence Length = 1562 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ttcttcgtcgacgacgtcccc 170 ||||||||||||||||||||| Sbjct: 817 ttcttcgtcgacgacgtcccc 837
>ref|NM_188958.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1590 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 ccggccccgacgtcgccggcgaga 373 ||||| |||||||||||||||||| Sbjct: 536 ccggctccgacgtcgccggcgaga 559
>ref|XM_463939.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1693 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 ccggccccgacgtcgccggcgaga 373 ||||| |||||||||||||||||| Sbjct: 613 ccggctccgacgtcgccggcgaga 636
>ref|NM_192152.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3156 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 gtcgccgccaccgccgctgc 523 |||||||||||||||||||| Sbjct: 704 gtcgccgccaccgccgctgc 685
>ref|XM_615134.2| PREDICTED: Bos taurus similar to Luc7 homolog (S. cerevisiae)-like isoform 1 (LOC535131), mRNA Length = 1117 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gtcgccgccaccgccgctgc 523 |||||||||||||||||||| Sbjct: 23 gtcgccgccaccgccgctgc 42
>gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence Length = 167427 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 ctgtcgccgccaccgccgct 521 |||||||||||||||||||| Sbjct: 125985 ctgtcgccgccaccgccgct 125966
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 gtcgccgccaccgccgctgc 523 |||||||||||||||||||| Sbjct: 2342086 gtcgccgccaccgccgctgc 2342067
>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12 Length = 300000 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 gtcgccgccaccgccgctgcgccg 527 |||| ||||||||||||||||||| Sbjct: 192018 gtcgacgccaccgccgctgcgccg 191995
>gb|AE008890.1| Salmonella typhimurium LT2, section 194 of 220 of the complete genome Length = 21582 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 cgccgccaccgccgctgcgccgga 529 |||||||| ||||||||||||||| Sbjct: 3055 cgccgccatcgccgctgcgccgga 3032
>gb|AF274858.3| Homo sapiens chromosome X clone RP11-54I20, RP11-66N11 map q28, complete sequence Length = 191983 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 443 cagctccatccacgggcagctcag 466 ||||||||| |||||||||||||| Sbjct: 153363 cagctccatgcacgggcagctcag 153340
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cgccggccccgacgccgccg 220 |||||||||||||||||||| Sbjct: 173916 cgccggccccgacgccgccg 173897
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cgccggccccgacgccgccg 220 |||||||||||||||||||| Sbjct: 297719 cgccggccccgacgccgccg 297700
>gb|AY993941.1| Microbacterium arborescens strain SE 14 cosmid MAS10D5, complete sequence Length = 33203 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 cgccggccccgacgtcgccg 367 |||||||||||||||||||| Sbjct: 32408 cgccggccccgacgtcgccg 32427
>emb|AL627279.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 15/20 Length = 264050 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 506 cgccgccaccgccgctgcgccgga 529 |||||||| ||||||||||||||| Sbjct: 202940 cgccgccatcgccgctgcgccgga 202963
>gb|AC122178.2| Homo sapiens chromosome 3 clone RP11-340I14, complete sequence Length = 201917 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccgccggccccgacgccgcc 219 |||||||||||||||||||| Sbjct: 130511 ccgccggccccgacgccgcc 130492
>emb|BX323601.6| Zebrafish DNA sequence from clone RP71-14P11, complete sequence Length = 207067 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 507 gccgccaccgccgctgcgccggaa 530 |||||||||||||| ||||||||| Sbjct: 11055 gccgccaccgccgccgcgccggaa 11078
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 ccggccccgacgtcgccggcgaga 373 ||||| |||||||||||||||||| Sbjct: 20423273 ccggctccgacgtcgccggcgaga 20423250
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ccgccaccgccgctgcgccg 527 |||||||||||||||||||| Sbjct: 9507112 ccgccaccgccgctgcgccg 9507093
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 gtcgccgccaccgccgctgc 523 |||||||||||||||||||| Sbjct: 91891 gtcgccgccaccgccgctgc 91872
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 cgccgccaccgccgctgcgccgga 529 |||||||| ||||||||||||||| Sbjct: 4056532 cgccgccatcgccgctgcgccgga 4056509
>dbj|AP004145.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047F09 Length = 79652 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 ctgtcgccgccaccgccgct 521 |||||||||||||||||||| Sbjct: 55029 ctgtcgccgccaccgccgct 55010
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0575F10 Length = 150462 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 ccggccccgacgtcgccggcgaga 373 ||||| |||||||||||||||||| Sbjct: 68802 ccggctccgacgtcgccggcgaga 68825
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1103G11 Length = 182931 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 cccctgtcgccgccaccgcc 518 |||||||||||||||||||| Sbjct: 79239 cccctgtcgccgccaccgcc 79220
>dbj|AP006465.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1059D01 Length = 158792 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ccgccaccgccgctgcgccg 527 |||||||||||||||||||| Sbjct: 14842 ccgccaccgccgctgcgccg 14823
>dbj|AP006447.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1100H02 Length = 128773 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ccgccaccgccgctgcgccg 527 |||||||||||||||||||| Sbjct: 89098 ccgccaccgccgctgcgccg 89079
>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0018H03, complete sequence Length = 94450 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 ccggccccgacgtcgccggcgaga 373 ||||| |||||||||||||||||| Sbjct: 11740 ccggctccgacgtcgccggcgaga 11763
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 ccggccccgacgtcgccggcgaga 373 ||||| |||||||||||||||||| Sbjct: 53903 ccggctccgacgtcgccggcgaga 53880
>dbj|AK111036.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A08, full insert sequence Length = 885 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 gtcgccgccaccgccgctgc 523 |||||||||||||||||||| Sbjct: 159 gtcgccgccaccgccgctgc 140
>dbj|AK106726.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H03, full insert sequence Length = 1693 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 ccggccccgacgtcgccggcgaga 373 ||||| |||||||||||||||||| Sbjct: 613 ccggctccgacgtcgccggcgaga 636
>gb|AF045609.1|AF045609 Sinorhizobium meliloti oxidoreductase (ordL) gene, partial cds; and glucose-6-phosphate dehydrogenase (zwf), oxidoreductase (devB), 6-phosphogluconate dehydratase (edd), ATP-binding cassette protein (aglK), alpha-glucosidase (aglA), inner membrane permease (aglG), inner membrane permease (aglF), alpha-glucoside binding protein (aglE), and regulatory protein (aglR) genes, complete cds Length = 15640 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 504 gtcgccgccaccgccgctgcgccg 527 |||| ||||||||||||||||||| Sbjct: 13089 gtcgacgccaccgccgctgcgccg 13112
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 506 cgccgccaccgccgctgcgccgga 529 |||||||| ||||||||||||||| Sbjct: 3652603 cgccgccatcgccgctgcgccgga 3652626
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 cgccgccaccgccgctgcgccgga 529 |||||||| ||||||||||||||| Sbjct: 4211535 cgccgccatcgccgctgcgccgga 4211512 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,371,979 Number of Sequences: 3902068 Number of extensions: 3371979 Number of successful extensions: 85899 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83856 Number of HSP's gapped (non-prelim): 2043 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
