>EFR1_CALJA (P61553) ERV-FRD provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (Syncytin-2) [Contains: Surface
           protein (SU); Transmembrane protein (TM)]
          Length = 538

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +3

Query: 3   YSWAXLLFSLVRVSWNALTNIHVNYSGLQPEPXISNQLFNNA--IVI**TALSRKPITAT 176
           Y W   L  L+R++ + L+ +  ++  ++ EP I   +F N   I I    ++ K    T
Sbjct: 76  YQWDPNLKGLIRLANSLLSKVKQDFPDIRKEPPIFGPIFTNVNLIGIAPICVTAKRKDGT 135

Query: 177 RISVLRHHICPIWMTAVYSLRRVEWWKDHCTLIRWRFPK 293
            +  L   +C + +T   + +  + +  +    + RFPK
Sbjct: 136 NVGTLPSTVCNVTLTVDPNQQTYQKYAHNQFHHQPRFPK 174

>1A110_ARATH (Q9LQ10) Probable aminotransferase ACS10 (EC 2.6.1.-)|
          Length = 557

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = -3

Query: 304 CLAILGNLHLINVQWSFHHSTRRKLYTAVIQMGHM*CRSTDILVAVMGFLDRAVYQ 137
           CLA  GN  L+    S  +    K  T V  + H+ CRS D     M  LDRA YQ
Sbjct: 254 CLADSGNAFLVPTPCSPGYDRDVKWRTGV-DIIHVPCRSADNFNMSMVVLDRAFYQ 308

>PMPB_CHLTR (O84418) Probable outer membrane protein pmpB precursor (Polymorphic|
            membrane protein B)
          Length = 1754

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 79   VVSNQNQXS---VINCSTMQLSSDKLPYRGNPLLPPEYLYCGITYAPSG 216
            V+SNQN  +   VIN  T+ LSS   P  G    PPE      T + SG
Sbjct: 1256 VLSNQNIANGALVINGLTIDLSSMGTPQAGEIFSPPELRIVATTSSASG 1304

>IP3KB_HUMAN (P27987) Inositol-trisphosphate 3-kinase B (EC 2.7.1.127) (Inositol|
           1,4,5-trisphosphate 3-kinase B) (IP3K B) (IP3 3-kinase
           B) (IP3K-B)
          Length = 946

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
 Frame = +1

Query: 13  PXYCSLSYVCLGMPSQTSTSITVVSNQNQXSVINC-STMQLSSDKLPYRGNPLLPPEYLY 189
           P      Y+  GMP      +     +   SV +  S+  LS  +LP R    + PE   
Sbjct: 369 PGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSDSLSWSRLP-RALASVGPEEAR 427

Query: 190 CGITYAPSG*RRYIVCDELNGGKTTAR*SGGGSLK*PGT 306
            G   AP G  R+ + D + GG  T    GG     PGT
Sbjct: 428 SG---APVGGGRWQLSDRVEGGSPTLGLLGGSPSAQPGT 463

>XYNA_THESA (P36917) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase A)|
            (1,4-beta-D-xylan xylanohydrolase A)
          Length = 1157

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = -2

Query: 281  PPDQRAV-VFPPFNSSQTIYRRHPDGAYVM-----PQYRYSGGSNGFPR*GSLSDDNCIV 120
            P +Q +V VF   N+ +T Y  + DG Y +       +  S  SNGF    SL+    IV
Sbjct: 926  PYEQDSVEVFVDQNNDKTTYYENDDGQYRVNYDNEQSFGGSTNSNGFKSATSLTQSGYIV 985

Query: 119  EQLI 108
            E+ I
Sbjct: 986  EEAI 989

>EXT1_MOUSE (P97464) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)|
           (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
           acetylglucosaminyl-proteoglycan
           4-alpha-N-acetylglucosaminyltransferase) (Multiple
           exostoses protein 1 homolog)
          Length = 746

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 260 VFPPFNSSQTIYRRHPDGAYVMPQY 186
           +F   + +  I+ +HP G +V+PQY
Sbjct: 434 IFKHISRNSLIWNKHPGGLFVLPQY 458

>EXT1_HUMAN (Q16394) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)|
           (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-
           acetylglucosaminyl-proteoglycan
           4-alpha-N-acetylglucosaminyltransferase) (Putative tumor
           suppressor protein EXT1) (Multiple exostoses protein
          Length = 746

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 260 VFPPFNSSQTIYRRHPDGAYVMPQY 186
           +F   + +  I+ +HP G +V+PQY
Sbjct: 434 IFKHISRNSLIWNKHPGGLFVLPQY 458

>EXT1_CRIGR (Q9JK82) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225) (Heparan sulfate|
           copolymerase) (Multiple exostoses protein 1 homolog)
          Length = 746

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 260 VFPPFNSSQTIYRRHPDGAYVMPQY 186
           +F   + +  I+ +HP G +V+PQY
Sbjct: 434 IFKHISRNSLIWNKHPGGLFVLPQY 458

>YG3K_YEAST (P48235) Hypothetical 24.0 kDa protein in MOL1-NAT2 intergenic|
           region
          Length = 211

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 212 DGAYVMPQYRYSGGSNGFPR*GSLSDDNCIVEQLIT---DXWFWLETT 78
           D +Y +    + G  N  PR   L DD+ I +Q+I    + WF L ++
Sbjct: 164 DSSYQLHSKAHLGYENNLPRSNDLIDDHLISDQIIENNYNLWFRLSSS 211

>ATS9_HUMAN (Q9P2N4) ADAMTS-9 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 9) (ADAM-TS
            9) (ADAM-TS9)
          Length = 1935

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
 Frame = +1

Query: 46   GMPSQTSTSITVVSNQNQXSVINCSTMQLSSDKLPYRGNPLLPPEYLY-------CGITY 204
            G  S+    + V  N+N+     C   +   D+       L P EY++       C +T 
Sbjct: 1572 GEGSRYRKVVCVDDNKNEVHGARCDVSKRPVDR---ESCSLQPCEYVWITGEWSECSVTC 1628

Query: 205  APSG*RRYIVCDELNGGKTTAR*SGGGSLK*PGTRQP 315
                 +R + C E+  GK     S   ++  PGT+ P
Sbjct: 1629 GKGYKQRLVSCSEIYTGKENYEYSYQTTINCPGTQPP 1665

>XYNX_CLOTM (P38535) Exoglucanase xynX precursor (EC 3.2.1.91)|
           (Exocellobiohydrolase) (1,4-beta-cellobiohydrolase)
          Length = 1087

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
 Frame = -2

Query: 281 PPDQRAV-VFPPFNSSQTIYRRHPDGAYVM-----PQYRYSGGSNGFPR*GSLSDDNCIV 120
           P +Q +V VF   N+ +T Y    DG Y +       +  S  SNGF    SL+    IV
Sbjct: 778 PYEQDSVEVFVDQNNDKTSYYESDDGQYRVNYDNEQSFGGSTNSNGFKSATSLTQSGYIV 837

Query: 119 EQLITDXWFWLETTVID 69
           E+ I     W   T+++
Sbjct: 838 EEAIP----WTSITLLN 850

>SOTB_PASMU (Q9CM87) Probable sugar efflux transporter|
          Length = 404

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 313 AGACLAILGNLHLINVQWSFHHSTRRKLYT 224
           AGA  A+ G +  I VQW + H    KL T
Sbjct: 368 AGALFAVFGLVLFILVQWKYGHLAPNKLST 397

>GGA2_MOUSE (Q6P5E6) ADP-ribosylation factor-binding protein GGA2|
           (Golgi-localized, gamma ear-containing, ARF-binding
           protein 2) (Gamma-adaptin-related protein 2)
          Length = 603

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 17  PIVLSRTCVLECPHKHPRQLQWSPT 91
           P V+S+T +L+ PHK P +L++  T
Sbjct: 553 PAVISQTLLLDNPHKEPIRLRYKLT 577

>YGLN_LACDE (P45624) Hypothetical 33.9 kDa protein in glnA 5'region (ORF306)|
          Length = 306

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 109 INCSTMQLSSDKLPYRGNPLLPPEYLY--CGITYA 207
           ++ STM+ S+D       P+ PP  LY  CG+TYA
Sbjct: 259 VSGSTMEFSAD------GPIRPPYALYMQCGLTYA 287

>GGPS_PSEAG (Q93JY3) Glucosylglycerol-phosphate synthase (EC 2.4.1.213)|
           (Glucosyl-glycerol-phosphate synthase) (GG-phosphate
           synthase) (GGPS)
          Length = 755

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 311 WRVPGYFREPPPDQRAVVF 255
           W VPGY RE  PD R   F
Sbjct: 402 WMVPGYLRELRPDLRIAFF 420

>MEMB_METCA (P18798) Methane monooxygenase component A beta chain (EC|
           1.14.13.25) (Methane hydroxylase)
          Length = 388

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 207 PIWMTAVYSLRRVEWWKDHCTLIRWRFPKI 296
           P W      LR V+W+K    L RW  P +
Sbjct: 80  PSWGNETTELRTVDWFKHRDPLRRWHAPYV 109

>CFAB_MOUSE (P04186) Complement factor B precursor (EC 3.4.21.47) (C3/C5|
           convertase) [Contains: Complement factor B Ba fragment;
           Complement factor B Bb fragment]
          Length = 761

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 80  WSPTRTXDQ*SIVQQCNCHLINCP 151
           WS  +T DQ  IVQ+  C  I CP
Sbjct: 79  WSDLQTRDQ-KIVQKAECRAIRCP 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,978,255
Number of Sequences: 219361
Number of extensions: 1062669
Number of successful extensions: 2527
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2526
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)