ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24j13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TBCE_XENLA (Q5U508) Tubulin-specific chaperone E (Tubulin-foldin... 31 2.7
2MOBA_BIFLO (Q8GN32) Probable mobilization protein MobA 31 2.7
3CSH1_MOUSE (P18121) Chorionic somatomammotropin hormone 1 precur... 30 3.6
4C12AA_BACTU (Q45754) Pesticidal crystal protein cry12Aa (Insecti... 30 6.1
5RY44_DROME (Q24498) Ryanodine receptor 44F 30 6.1
6ABFA_ASPNG (P42254) Alpha-N-arabinofuranosidase A precursor (EC ... 29 7.9

>TBCE_XENLA (Q5U508) Tubulin-specific chaperone E (Tubulin-folding cofactor E)|
          Length = 522

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = -1

Query: 453 SGNNFLRVKIVNFGSDTVSLTISVSGLQASIN---ALGSNATVLTS-SNVKDENSFSNPT 286
           +G +F+R+K  NFG D ++      GL++  N    +G     L    ++++E S  N  
Sbjct: 65  TGGSFIRLKKANFGVDFLAALRKRYGLKSEQNEELVIGKKTVELVGFESIQEEQSKLNKL 124

Query: 285 KVVPVTS-QLHNAAEQMQVTLAAHSFSSFDLA 193
           K V +    + NA E+ Q+  +  +  + DL+
Sbjct: 125 KDVSLRECAVSNAGEKGQICHSCPNIMTADLS 156



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>MOBA_BIFLO (Q8GN32) Probable mobilization protein MobA|
          Length = 565

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
 Frame = +1

Query: 181 GLSKRKVERGEGVGS--ERDLHLFRGVMQLTCHGHDLGWVTERIFILYIAGRENSSV*PQ 354
           G + R +ER  GV    + +  + R    LT   H+LG + +R+  L+ A          
Sbjct: 245 GYAARAIERAGGVSERCQTNREIRRSNDLLTAIRHELGRIFDRLGELFAAKIGQLRQRQA 304

Query: 355 RVDASLEPGHRDCEAHGVRP-EVHNLYSQEVIPGILPGDSRCC*RTRVAGTDCNWMNHGT 531
           R +A+ EP  R  E    R  E         + G L  D+R   R R    +  W NHGT
Sbjct: 305 RPEAAREPNWRYFEGDARRQLEADRADHAAALRGRLM-DARADVRNR----ETWWKNHGT 359

Query: 532 TRF 540
             F
Sbjct: 360 EEF 362



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>CSH1_MOUSE (P18121) Chorionic somatomammotropin hormone 1 precursor (Placental|
           lactogen I) (PL-I)
          Length = 224

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -1

Query: 402 VSLTISVSGLQASINALGSNATVLTSSNVKDENSFSNPTKVVPVTSQLHNAAEQMQVT-- 229
           + LT+++SG      + G    +L SS +  EN  S PT +VP        AE +  T  
Sbjct: 1   MQLTLNLSG------SAGMQLLLLVSSLLLWENVSSKPTAMVPTEDLYTRLAELLHNTFI 54

Query: 228 LAAHSFSSFDL 196
           LAA  +  FDL
Sbjct: 55  LAADVYREFDL 65



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>C12AA_BACTU (Q45754) Pesticidal crystal protein cry12Aa (Insecticidal|
           delta-endotoxin CryXIIA(a)) (Crystaline entomocidal
           protoxin) (142 kDa crystal protein)
          Length = 1257

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/68 (22%), Positives = 38/68 (55%)
 Frame = -1

Query: 423 VNFGSDTVSLTISVSGLQASINALGSNATVLTSSNVKDENSFSNPTKVVPVTSQLHNAAE 244
           V++G D+V+  ++ + + A+I +    +  +TS ++ ++N+F   T    ++++L N   
Sbjct: 697 VDYGKDSVADGLNFNKITATIPSDAWYSGTITSMHLFNDNNFKTITPKFELSNELENITT 756

Query: 243 QMQVTLAA 220
           Q+    A+
Sbjct: 757 QVNALFAS 764



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>RY44_DROME (Q24498) Ryanodine receptor 44F|
          Length = 5127

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
 Frame = +1

Query: 211  EGVGSERDLH-------LFRGVMQLTCHGHDLGW 291
            EG   E+++H       LFR + QLTC GH+L W
Sbjct: 3997 EGAAGEKNMHDAEFTCALFRFI-QLTCEGHNLEW 4029



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>ABFA_ASPNG (P42254) Alpha-N-arabinofuranosidase A precursor (EC 3.2.1.55)|
           (Arabinosidase A) (ABF A)
          Length = 628

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -1

Query: 432 VKIVNFGSDTVSLTISVSGLQASINALGSNATVLTSSNVKDENSFSNPTKVVPVTSQ 262
           VK+ N+GS+T  LT+S+ G            TVL  S   D +++++ T+ +   S+
Sbjct: 556 VKLANYGSETQDLTVSIPGTST------GKLTVLADS---DPDAYNSDTQTLVTPSE 603


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,609,412
Number of Sequences: 219361
Number of extensions: 1454583
Number of successful extensions: 3816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3809
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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