ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24j11 |
|---|---|
| Clone Library Name | barley_pub |
>ATF7_MOUSE (Q8R0S1) Cyclic AMP-dependent transcription factor ATF-7| (Activating transcription factor 7) (Transcription factor ATF-A) Length = 413 Score = 35.4 bits (80), Expect = 0.12 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 6/116 (5%) Frame = -3 Query: 547 PIFHCNNISGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQF- 371 P+ + +IS P+ E++ R L +T T ++ GGCG V ++T+ NQ Sbjct: 238 PVNNSGSISPSGHPMPSEAKMR-LKATLTHQVSSINGGCGMVVGTASTMVTARPEQNQIL 296 Query: 370 ----EAQPATVPRVDPMQAAQTPVDDMMRHAYVDPHDPTKIFLQQ-PAAESQLRRR 218 +A P+V P Q + R DP + + FL++ AA S+ R++ Sbjct: 297 IQHPDAPSPAQPQVSPAQPTPSTGGRRRRTVDEDPDERRQRFLERNRAAASRCRQK 352
>SEC16_SCHPO (O14029) Multidomain vesicle coat protein| Length = 1995 Score = 34.3 bits (77), Expect = 0.27 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = -3 Query: 553 NQPIFHCNNISGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLF---LNLITSVRR 383 NQP+ H +N+ V PVV +++ L T + F G CGT V F L T+ + Sbjct: 1061 NQPLLH-SNLHSPVSPVVDSNEDSRLKFLSTQRPAFSFGPCGTIVMAFSTPSGLYTTSGK 1119 Query: 382 HNQFEAQPATVPRV 341 +F A P + ++ Sbjct: 1120 GTKFIAGPIKIEKL 1133
>ATF7_HUMAN (P17544) Cyclic AMP-dependent transcription factor ATF-7| (Activating transcription factor 7) (Transcription factor ATF-A) Length = 494 Score = 33.9 bits (76), Expect = 0.35 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 9/113 (7%) Frame = -3 Query: 529 NISGFVEPV---VPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQF---- 371 N SG + P +P L +T T ++ GGCG V ++T+ +Q Sbjct: 251 NSSGSISPSGHPIPSEAKMRLKATLTHQVSSINGGCGMVVGTASTMVTARPEQSQILIQH 310 Query: 370 -EAQPATVPRVDPMQAAQTPVDDMMRHAYVDPHDPTKIFLQQ-PAAESQLRRR 218 +A P+V P Q + R DP + + FL++ AA S+ R++ Sbjct: 311 PDAPSPAQPQVSPAQPTPSTGGRRRRTVDEDPDERRQRFLERNRAAASRCRQK 363
>ATF7_PONPY (Q5R9C9) Cyclic AMP-dependent transcription factor ATF-7| (Activating transcription factor 7) (Transcription factor ATF-A) Length = 483 Score = 33.5 bits (75), Expect = 0.46 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 9/113 (7%) Frame = -3 Query: 529 NISGFVEPV---VPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQF---- 371 N SG + P +P L +T T ++ GGCG V ++T+ +Q Sbjct: 240 NSSGSISPSGHPIPSEAKMRLKATLTHQVSSINGGCGMVVGSASTMVTARPEQSQILIQH 299 Query: 370 -EAQPATVPRVDPMQAAQTPVDDMMRHAYVDPHDPTKIFLQQ-PAAESQLRRR 218 +A P+V P Q + R DP + + FL++ AA S+ R++ Sbjct: 300 PDAPSPAQPQVSPAQPTPSTGGRRRRTVDEDPDERRQRFLERNRAAASRCRQK 352
>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate| filament-associated protein) (IFAP300) (Fragment) Length = 4473 Score = 32.0 bits (71), Expect = 1.3 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 13/115 (11%) Frame = -3 Query: 523 SGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQFEAQPATVPR 344 +G V P + E A + ++ + F L LI + +AQ +T Sbjct: 3010 AGLVGPELHEKLLSAEKAVTGYRDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGM 3069 Query: 343 VDPMQAAQTPVDDMMRHAYVD---------PHDPTKIFL----QQPAAESQLRRR 218 VDP ++ + P+D Y+D P + +++L Q+PA SQL++R Sbjct: 3070 VDPSKSHRVPLDVAYARGYLDKETNRALTSPRNDARVYLDPSSQEPATYSQLQQR 3124
>EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)| Length = 5065 Score = 31.6 bits (70), Expect = 1.7 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%) Frame = -3 Query: 391 VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 245 VR H EAQ AT +DP+ + + PVD R Y DP D TK F Sbjct: 4442 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 4501 Query: 244 AAES----QLRRRNYHGPADNTY 188 E+ QL RR P Y Sbjct: 4502 THENLTYVQLLRRCVPDPDTGLY 4524 Score = 31.6 bits (70), Expect = 1.7 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%) Frame = -3 Query: 391 VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 245 VR H EAQ AT +DP+ + + PVD R Y DP D TK F Sbjct: 3908 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 3967 Query: 244 AAES----QLRRRNYHGPADNTY 188 E+ QL RR P Y Sbjct: 3968 THENLTYVQLLRRCVPDPDTGLY 3990 Score = 31.6 bits (70), Expect = 1.7 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%) Frame = -3 Query: 391 VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 245 VR H EAQ AT +DP+ + + PVD R Y DP D TK F Sbjct: 3374 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 3433 Query: 244 AAES----QLRRRNYHGPADNTY 188 E+ QL RR P Y Sbjct: 3434 THENLTYVQLLRRCVPDPDTGLY 3456 Score = 31.6 bits (70), Expect = 1.7 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%) Frame = -3 Query: 391 VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 245 VR H EAQ AT +DP+ + + PVD R Y DP D TK F Sbjct: 2840 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 2899 Query: 244 AAES----QLRRRNYHGPADNTY 188 E+ QL RR P Y Sbjct: 2900 THENLTYVQLLRRCVPDPDTGLY 2922 Score = 31.6 bits (70), Expect = 1.7 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%) Frame = -3 Query: 391 VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 245 VR H EAQ AT +DP+ + + PVD R Y DP D TK F Sbjct: 2306 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 2365 Query: 244 AAES----QLRRRNYHGPADNTY 188 E+ QL RR P Y Sbjct: 2366 THENLTYVQLLRRCVPDPDTGLY 2388 Score = 31.2 bits (69), Expect = 2.3 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 15/83 (18%) Frame = -3 Query: 391 VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 245 VR H EAQ AT +DP+ + + PVD R Y +DP D TK F Sbjct: 687 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDQMLNLILLDPSDDTKGFFDPN 746 Query: 244 AAES----QLRRRNYHGPADNTY 188 E+ QL R P Y Sbjct: 747 THENLTYLQLLERCVRDPETGLY 769 Score = 29.6 bits (65), Expect = 6.6 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Frame = -3 Query: 391 VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 245 VR H EAQ AT +DP+ + + PVD R Y DP D TK F Sbjct: 4976 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 5035 Query: 244 AAES 233 E+ Sbjct: 5036 THEN 5039 Score = 29.6 bits (65), Expect = 6.6 Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 15/83 (18%) Frame = -3 Query: 391 VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 245 VR H EAQ AT +DP+ + + PVD R Y DP D TK F Sbjct: 1648 VREHGIRLLEAQIATGGIIDPVHSHRVPVDVAYRCGYFDEEMNRILADPSDDTKGFFDPN 1707 Query: 244 AAES----QLRRRNYHGPADNTY 188 E+ QL R P Y Sbjct: 1708 THENLTYLQLLERCVEDPETGLY 1730
>URE1_SYNEL (Q8DMV6) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 572 Score = 31.6 bits (70), Expect = 1.7 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%) Frame = -3 Query: 529 NISGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLI--TSVRRHNQFEAQPA 356 N SGFVE + +NR +++ HT EG G P + L +V + +P Sbjct: 253 NESGFVEDTIAAFKNRTIHAYHT------EGAGGGHAPDIIKLCGQANVLPSSTNPTRPY 306 Query: 355 TVPRVDPMQAAQTPVDDMMRHAYVDPHDPTKIFLQQPAAESQLRR 221 TV +D +D +M ++DP P + AES++RR Sbjct: 307 TVNTLD------EHLDMLMVCHHLDPSIPEDVAF----AESRIRR 341
>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth factor-like domains 2) (Epidermal growth factor-like 1) Length = 3312 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Frame = -2 Query: 506 GCSRKPEQGFVLHPHLQDLVQGRWMWHLC----ATLPEPDHVSAAPQSV*SPACYRAPCG 339 G + + QG V +QG W+ A LP V+A P V + AC PC Sbjct: 1903 GSAEEAPQGLV------GCIQGVWLGSTPSGSPALLPPSHRVNAEPGCVVTNACASGPCP 1956 Query: 338 PHA 330 PHA Sbjct: 1957 PHA 1959
>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)| Length = 4684 Score = 30.4 bits (67), Expect = 3.9 Identities = 31/106 (29%), Positives = 41/106 (38%), Gaps = 13/106 (12%) Frame = -3 Query: 511 EPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITS--VRRHN--QFEAQPATVPR 344 E VV + L S +K+ G + LF + VR H EAQ AT Sbjct: 2893 EGVVGPELHHKLLSAERAVTGYKDPYTGQQISLFQAMQKGLIVREHGIRLLEAQIATGGV 2952 Query: 343 VDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES 233 +DP+ + + PVD R Y DP D TK F E+ Sbjct: 2953 IDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPNTHEN 2998
>RECA_ANAVT (P14167) Protein recA (Recombinase A)| Length = 358 Score = 30.0 bits (66), Expect = 5.0 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = -3 Query: 514 VEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQFEAQPATVPRVDP 335 +E PES + + H + KEGG FV L + + Q V + D Sbjct: 65 IEIYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASALGVDIQNLLVSQPDT 124 Query: 334 MQAAQTPVDDMMRHAYVD 281 ++A VD ++R A VD Sbjct: 125 GESALEIVDQLVRSAAVD 142
>RECA_ANASP (P58552) Protein recA (Recombinase A)| Length = 357 Score = 30.0 bits (66), Expect = 5.0 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = -3 Query: 514 VEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQFEAQPATVPRVDP 335 +E PES + + H + KEGG FV L + + Q V + D Sbjct: 65 IEIYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASALGVDIQNLLVSQPDT 124 Query: 334 MQAAQTPVDDMMRHAYVD 281 ++A VD ++R A VD Sbjct: 125 GESALEIVDQLVRSAAVD 142
>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)| Length = 4687 Score = 30.0 bits (66), Expect = 5.0 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 13/115 (11%) Frame = -3 Query: 523 SGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQFEAQPATVPR 344 +G V P + E A + ++ + F L LI + +AQ +T Sbjct: 3224 AGLVGPEMHEKLLSAEKAVTGYRDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGI 3283 Query: 343 VDPMQAAQTPVDDMMRHAYVD---------PHDPTKIFL----QQPAAESQLRRR 218 VDP ++ + P+D Y+D P D +++L ++P SQL++R Sbjct: 3284 VDPSKSHRVPLDVAYARGYLDKETNRALTSPRDDARVYLDPSTREPVTYSQLQQR 3338
>EPIPL_MOUSE (Q8R0W0) Epiplakin| Length = 6548 Score = 29.6 bits (65), Expect = 6.6 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Frame = -3 Query: 370 EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 230 EAQ AT +DP+ + + PVD + Y DP D TK F E+ Q Sbjct: 5953 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 6012 Query: 229 LRRRNYHGPADNTY 188 L RR P Y Sbjct: 6013 LLRRCVRDPETGFY 6026 Score = 29.6 bits (65), Expect = 6.6 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Frame = -3 Query: 370 EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 230 EAQ AT +DP+ + + PVD + Y DP D TK F E+ Q Sbjct: 5438 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 5497 Query: 229 LRRRNYHGPADNTY 188 L RR P Y Sbjct: 5498 LLRRCVRDPETGFY 5511 Score = 29.6 bits (65), Expect = 6.6 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Frame = -3 Query: 370 EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 230 EAQ AT +DP+ + + PVD + Y DP D TK F E+ Q Sbjct: 4923 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 4982 Query: 229 LRRRNYHGPADNTY 188 L RR P Y Sbjct: 4983 LLRRCVRDPETGFY 4996 Score = 29.6 bits (65), Expect = 6.6 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Frame = -3 Query: 370 EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 230 EAQ AT +DP+ + + PVD + Y DP D TK F E+ Q Sbjct: 4408 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 4467 Query: 229 LRRRNYHGPADNTY 188 L RR P Y Sbjct: 4468 LLRRCVRDPETGFY 4481 Score = 29.6 bits (65), Expect = 6.6 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Frame = -3 Query: 370 EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 230 EAQ AT +DP+ + + PVD + Y DP D TK F E+ Q Sbjct: 3893 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 3952 Query: 229 LRRRNYHGPADNTY 188 L RR P Y Sbjct: 3953 LLRRCVRDPETGFY 3966 Score = 29.6 bits (65), Expect = 6.6 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Frame = -3 Query: 370 EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 230 EAQ AT +DP+ + + PVD + Y DP D TK F E+ Q Sbjct: 3378 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 3437 Query: 229 LRRRNYHGPADNTY 188 L RR P Y Sbjct: 3438 LLRRCVRDPETGFY 3451 Score = 29.6 bits (65), Expect = 6.6 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Frame = -3 Query: 370 EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 230 EAQ AT +DP+ + + PVD + Y DP D TK F E+ Q Sbjct: 2863 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 2922 Query: 229 LRRRNYHGPADNTY 188 L RR P Y Sbjct: 2923 LLRRCVRDPETGFY 2936 Score = 29.6 bits (65), Expect = 6.6 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Frame = -3 Query: 370 EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 230 EAQ AT +DP+ + + PVD + Y DP D TK F E+ Q Sbjct: 2348 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 2407 Query: 229 LRRRNYHGPADNTY 188 L RR P Y Sbjct: 2408 LLRRCVRDPETGFY 2421
>ZSWM4_MOUSE (Q8C7B8) Zinc finger SWIM domain-containing protein 4| Length = 1101 Score = 29.6 bits (65), Expect = 6.6 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%) Frame = +3 Query: 381 WRRTDVIRFRKSGTKVPHPPSLNKILKVW------VEYKALFWLSGTTGST 515 WRR +++R+ S PP+L I+K W VE + ++GTT +T Sbjct: 799 WRRREMVRWLVSCATEIGPPALMSIMKNWYSLFTPVEAVTIVAVTGTTHAT 849
>CLPB_PHOLL (Q7N788) Chaperone clpB| Length = 857 Score = 29.3 bits (64), Expect = 8.6 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = -3 Query: 487 NRALYSTHTFKILFKEGGCGTFVPLFLNL-ITSVRRHNQFEAQPATVPRVDPMQAAQTPV 311 N+ + H L K+ G G+ PL ++ I + R NQ E +PRV + P Sbjct: 26 NQFIEPIHLMSSLLKQEG-GSIRPLLTSIGIDAGRFSNQLELALERLPRVQGIGGDVQPS 84 Query: 310 DDMMRH 293 +D++RH Sbjct: 85 NDLVRH 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,216,827 Number of Sequences: 219361 Number of extensions: 2194379 Number of successful extensions: 5928 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5635 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5926 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
