ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24j07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF475119.1| Triticum aestivum succinate dehydrogenase subunit 3 mRNA, partial cds Length = 399 Score = 622 bits (314), Expect = e-175 Identities = 374/393 (95%), Gaps = 1/393 (0%) Strand = Plus / Minus Query: 133 tcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcacc 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 399 tcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcacc 340 Query: 193 cagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttctt 252 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 339 cagcgcagcgccaaatatacggtgtgagatggagaacgtagcgctcagctgtggcttctt 280 Query: 253 cagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttgt 312 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 279 cagaggaagatggggagacagtgggcggttcgcaacaggagtcgacaggggacgacttgt 220 Query: 313 atgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaaga 372 ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 219 atgcagggatcggtttccagatggaggcatcttctgtcgcagagctcctaagggagaaga 160 Query: 373 tgtgtagctctttgcttgcccaatgcgtgaggagtgtctaagggcatccatgttgttgaa 432 |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 159 tgtgtagctccttgcttgcccaatgcttgaggagtgtctaaggccatccatgttgttgaa 100 Query: 433 agacgagttgggggtaccaaccgcaccacggagagcaaatggagcatctctcaggggtgc 492 ||||||||||| |||||||| ||||||||||||||||||||||| | | |||||||||| Sbjct: 99 agacgagttggaggtaccaaaggcaccacggagagcaaatggagcgtntatcaggggtgc 40 Query: 493 aaagcggggtgttgctgtgatacttgtccattc 525 ||||| ||||| ||||||||||||||||||||| Sbjct: 39 aaagc-gggtgctgctgtgatacttgtccattc 8
>dbj|AK058482.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D05, full insert sequence Length = 595 Score = 256 bits (129), Expect = 7e-65 Identities = 309/369 (83%) Strand = Plus / Minus Query: 132 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 191 ||||||| |||||||||| || ||| |||| ||||||||||||||||| ||| |||| | Sbjct: 502 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 443 Query: 192 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 251 |||| ||| | ||||| |||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 442 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 383 Query: 252 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 311 ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 382 tcaaagggagatggggtgacagtgggcggttcgcaacaggagccgacaggggacgacttg 323 Query: 312 tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 371 | || ||| ||||||||||||||| |||||| ||| ||| ||||||| | |||| Sbjct: 322 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 263 Query: 372 atgtgtagctctttgcttgcccaatgcgtgaggagtgtctaagggcatccatgttgttga 431 ||||||||||| | ||||| ||| | |||||| ||||| || ||| |||||||||| Sbjct: 262 atgtgtagctcctagcttgtccagaacttgaggattgtctcagatgatctatgttgttga 203 Query: 432 aagacgagttgggggtaccaaccgcaccacggagagcaaatggagcatctctcaggggtg 491 | || ||||| | | |||||| ||||| |||||||||||||||||||| || ||||||| Sbjct: 202 aggatgagtttgagctaccaagggcaccgcggagagcaaatggagcatcactgaggggtg 143 Query: 492 caaagcggg 500 |||| |||| Sbjct: 142 caaaccggg 134
>ref|XM_478436.1| Oryza sativa (japonica cultivar-group), mRNA Length = 595 Score = 248 bits (125), Expect = 2e-62 Identities = 308/369 (83%) Strand = Plus / Minus Query: 132 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 191 ||||||| |||||||||| || ||| |||| ||||||||||||||||| ||| |||| | Sbjct: 502 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 443 Query: 192 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 251 |||| ||| | ||||| |||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 442 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 383 Query: 252 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 311 ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 382 tcaaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttg 323 Query: 312 tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 371 | || ||| ||||||||||||||| |||||| ||| ||| ||||||| | |||| Sbjct: 322 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 263 Query: 372 atgtgtagctctttgcttgcccaatgcgtgaggagtgtctaagggcatccatgttgttga 431 ||||||||||| | ||||| ||| | |||||| ||||| || ||| |||||||||| Sbjct: 262 atgtgtagctcctagcttgtccagaacttgaggattgtctcagatgatctatgttgttga 203 Query: 432 aagacgagttgggggtaccaaccgcaccacggagagcaaatggagcatctctcaggggtg 491 | || ||||| | | |||||| ||||| |||||||||||||||||||| || ||||||| Sbjct: 202 aggatgagtttgagctaccaagggcaccgcggagagcaaatggagcatcactgaggggtg 143 Query: 492 caaagcggg 500 |||| |||| Sbjct: 142 caaaccggg 134
>ref|XM_463920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 744 Score = 218 bits (110), Expect = 2e-53 Identities = 188/214 (87%) Strand = Plus / Minus Query: 132 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 191 ||||||| |||||||||| || |||| |||| || |||||||||||||| |||||||||| Sbjct: 557 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 498 Query: 192 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 251 ||| |||| | |||||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 497 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 438 Query: 252 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 311 |||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| |||||| Sbjct: 437 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 378 Query: 312 tatgtagggatcggtttccagatggaggcatctt 345 | || |||| |||| ||||||||| ||||||| Sbjct: 377 tgtgcaggggtcggcatccagatgggagcatctt 344 Score = 81.8 bits (41), Expect = 2e-12 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand = Plus / Minus Query: 455 gcaccacggagagcaaatggagcatctctcaggggtgcaaagcggggtgttgctgtgata 514 ||||||||||||||||||||||||||||| | ||| ||||| | ||| |||||||||||| Sbjct: 234 gcaccacggagagcaaatggagcatctctgaagggagcaaatc-gggagttgctgtgata 176 Query: 515 cttgtccattcct 527 ||| ||||||||| Sbjct: 175 cttctccattcct 163
>gb|AF362741.1|AF362741 Oryza sativa succinate dehydrogenase subunit 3 (sdh3) gene, complete cds; nuclear gene for mitochondrial product Length = 2864 Score = 218 bits (110), Expect = 2e-53 Identities = 188/214 (87%) Strand = Plus / Minus Query: 132 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 191 ||||||| |||||||||| || |||| |||| || |||||||||||||| |||||||||| Sbjct: 2660 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 2601 Query: 192 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 251 ||| |||| | |||||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 2600 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 2541 Query: 252 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 311 |||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| |||||| Sbjct: 2540 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 2481 Query: 312 tatgtagggatcggtttccagatggaggcatctt 345 | || |||| |||| ||||||||| ||||||| Sbjct: 2480 tgtgcaggggtcggcatccagatgggagcatctt 2447 Score = 77.8 bits (39), Expect = 4e-11 Identities = 64/71 (90%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 457 accacggagagcaaatggagcatctctcaggggtgcaaagcggggtgttgctgtgatact 516 ||||||||||||||||||||||||||| | ||| ||||| | ||| |||||||||||||| Sbjct: 1656 accacggagagcaaatggagcatctctgaagggagcaaatc-gggagttgctgtgatact 1598 Query: 517 tgtccattcct 527 | ||||||||| Sbjct: 1597 tctccattcct 1587
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 218 bits (110), Expect = 2e-53 Identities = 188/214 (87%) Strand = Plus / Minus Query: 132 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 191 ||||||| |||||||||| || |||| |||| || |||||||||||||| |||||||||| Sbjct: 1154066 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 1154007 Query: 192 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 251 ||| |||| | |||||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 1154006 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 1153947 Query: 252 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 311 |||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| |||||| Sbjct: 1153946 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 1153887 Query: 312 tatgtagggatcggtttccagatggaggcatctt 345 | || |||| |||| ||||||||| ||||||| Sbjct: 1153886 tgtgcaggggtcggcatccagatgggagcatctt 1153853 Score = 77.8 bits (39), Expect = 4e-11 Identities = 64/71 (90%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 457 accacggagagcaaatggagcatctctcaggggtgcaaagcggggtgttgctgtgatact 516 ||||||||||||||||||||||||||| | ||| ||||| | ||| |||||||||||||| Sbjct: 1153062 accacggagagcaaatggagcatctctgaagggagcaaatc-gggagttgctgtgatact 1153004 Query: 517 tgtccattcct 527 | ||||||||| Sbjct: 1153003 tctccattcct 1152993
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1020_C02 Length = 124578 Score = 218 bits (110), Expect = 2e-53 Identities = 188/214 (87%) Strand = Plus / Minus Query: 132 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 191 ||||||| |||||||||| || |||| |||| || |||||||||||||| |||||||||| Sbjct: 106590 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 106531 Query: 192 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 251 ||| |||| | |||||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 106530 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 106471 Query: 252 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 311 |||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| |||||| Sbjct: 106470 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 106411 Query: 312 tatgtagggatcggtttccagatggaggcatctt 345 | || |||| |||| ||||||||| ||||||| Sbjct: 106410 tgtgcaggggtcggcatccagatgggagcatctt 106377 Score = 77.8 bits (39), Expect = 4e-11 Identities = 64/71 (90%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 457 accacggagagcaaatggagcatctctcaggggtgcaaagcggggtgttgctgtgatact 516 ||||||||||||||||||||||||||| | ||| ||||| | ||| |||||||||||||| Sbjct: 105586 accacggagagcaaatggagcatctctgaagggagcaaatc-gggagttgctgtgatact 105528 Query: 517 tgtccattcct 527 | ||||||||| Sbjct: 105527 tctccattcct 105517
>dbj|AK103260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124C12, full insert sequence Length = 744 Score = 218 bits (110), Expect = 2e-53 Identities = 188/214 (87%) Strand = Plus / Minus Query: 132 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 191 ||||||| |||||||||| || |||| |||| || |||||||||||||| |||||||||| Sbjct: 557 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 498 Query: 192 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 251 ||| |||| | |||||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 497 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 438 Query: 252 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 311 |||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| |||||| Sbjct: 437 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 378 Query: 312 tatgtagggatcggtttccagatggaggcatctt 345 | || |||| |||| ||||||||| ||||||| Sbjct: 377 tgtgcaggggtcggcatccagatgggagcatctt 344 Score = 81.8 bits (41), Expect = 2e-12 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand = Plus / Minus Query: 455 gcaccacggagagcaaatggagcatctctcaggggtgcaaagcggggtgttgctgtgata 514 ||||||||||||||||||||||||||||| | ||| ||||| | ||| |||||||||||| Sbjct: 234 gcaccacggagagcaaatggagcatctctgaagggagcaaatc-gggagttgctgtgata 176 Query: 515 cttgtccattcct 527 ||| ||||||||| Sbjct: 175 cttctccattcct 163
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 204 bits (103), Expect = 2e-49 Identities = 214/251 (85%) Strand = Plus / Minus Query: 132 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 191 ||||||| |||||||||| || ||| |||| ||||||||||||||||| ||| |||| | Sbjct: 20075069 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 20075010 Query: 192 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 251 |||| ||| | ||||| |||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 20075009 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 20074950 Query: 252 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 311 ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 20074949 tcaaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttg 20074890 Query: 312 tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 371 | || ||| ||||||||||||||| |||||| ||| ||| ||||||| | |||| Sbjct: 20074889 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 20074830 Query: 372 atgtgtagctc 382 ||||||||||| Sbjct: 20074829 atgtgtagctc 20074819 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 461 cggagagcaaatggagcatctctcaggggtgcaaagcggg 500 |||||||||||||||||||| || ||||||||||| |||| Sbjct: 20074366 cggagagcaaatggagcatcactgaggggtgcaaaccggg 20074327
>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1657_A07 Length = 125217 Score = 204 bits (103), Expect = 2e-49 Identities = 214/251 (85%) Strand = Plus / Minus Query: 132 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 191 ||||||| |||||||||| || ||| |||| ||||||||||||||||| ||| |||| | Sbjct: 39672 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 39613 Query: 192 ccagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttct 251 |||| ||| | ||||| |||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 39612 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 39553 Query: 252 tcagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 311 ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 39552 tcaaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttg 39493 Query: 312 tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 371 | || ||| ||||||||||||||| |||||| ||| ||| ||||||| | |||| Sbjct: 39492 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 39433 Query: 372 atgtgtagctc 382 ||||||||||| Sbjct: 39432 atgtgtagctc 39422 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 461 cggagagcaaatggagcatctctcaggggtgcaaagcggg 500 |||||||||||||||||||| || ||||||||||| |||| Sbjct: 38969 cggagagcaaatggagcatcactgaggggtgcaaaccggg 38930
>gb|AF362742.1|AF362742 Oryza sativa succinate dehydrogenase subunit 3 (sdh3) gene, complete cds; nuclear gene for mitochondrial product Length = 764 Score = 202 bits (102), Expect = 9e-49 Identities = 213/250 (85%) Strand = Plus / Minus Query: 133 tcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcacc 192 |||||| |||||||||| || ||| |||| ||||||||||||||||| ||| |||| || Sbjct: 764 tcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctcc 705 Query: 193 cagcgcaacgccaaatatacggtgtgagatggagaatgtagcgctcagctgtggcttctt 252 ||| ||| | ||||| |||||||||||||| ||||| ||||| |||||||| |||||||| Sbjct: 704 cagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttctt 645 Query: 253 cagaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttgt 312 || ||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 644 caaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttgt 585 Query: 313 atgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaaga 372 || ||| ||||||||||||||| |||||| ||| ||| ||||||| | ||||| Sbjct: 584 gtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaaga 525 Query: 373 tgtgtagctc 382 |||||||||| Sbjct: 524 tgtgtagctc 515 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 461 cggagagcaaatggagcatctctcaggggtgcaaagcggg 500 |||||||||||||||||||| || ||||||||||| |||| Sbjct: 62 cggagagcaaatggagcatcactgaggggtgcaaaccggg 23
>gb|BT017399.1| Zea mays clone EL01N0328G05.c mRNA sequence Length = 726 Score = 125 bits (63), Expect = 2e-25 Identities = 144/171 (84%) Strand = Plus / Minus Query: 175 ggatatgatggcagcacccagcgcaacgccaaatatacggtgtgagatggagaatgtagc 234 ||||||||||||| | |||||||| || || || |||||||| ||||| ||||| ||||| Sbjct: 426 ggatatgatggcaactcccagcgcgacaccgaagatacggtgcgagatagagaaagtagc 367 Query: 235 gctcagctgtggcttcttcagaggaagatggggagacagtgggcggttcgcaacaggagc 294 ||| | ||||||||||||||||||||||||||| ||||| ||||||||||| |||| || Sbjct: 366 gctgaactgtggcttcttcagaggaagatggggcgacagcgggcggttcgctacagcaga 307 Query: 295 cgacaggggacggcttgtatgtagggatcggtttccagatggaggcatctt 345 |||||||| | ||| ||||| ||| ||| ||||||| || || |||||| Sbjct: 306 tgacagggggcagctcgtatgcaggagtcgatttccaggtgtagacatctt 256
>gb|AY108580.1| Zea mays PCO078974 mRNA sequence Length = 816 Score = 125 bits (63), Expect = 2e-25 Identities = 144/171 (84%) Strand = Plus / Minus Query: 175 ggatatgatggcagcacccagcgcaacgccaaatatacggtgtgagatggagaatgtagc 234 ||||||||||||| | |||||||| || || || |||||||| ||||| ||||| ||||| Sbjct: 567 ggatatgatggcaactcccagcgcgacaccgaagatacggtgcgagatagagaaagtagc 508 Query: 235 gctcagctgtggcttcttcagaggaagatggggagacagtgggcggttcgcaacaggagc 294 ||| | ||||||||||||||||||||||||||| ||||| ||||||||||| |||| || Sbjct: 507 gctgaactgtggcttcttcagaggaagatggggcgacagcgggcggttcgctacagcaga 448 Query: 295 cgacaggggacggcttgtatgtagggatcggtttccagatggaggcatctt 345 |||||||| | ||| ||||| ||| ||| ||||||| || || |||||| Sbjct: 447 tgacagggggcagctcgtatgcaggagtcgatttccaggtgtagacatctt 397
>emb|AL049861.18|HSBK21C21 Human DNA sequence from clone CTA-21C21 on chromosome 1p22.2-31.1 Contains STSs and GSSs, complete sequence Length = 143163 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 403 ggagtgtctaagggcatccatg 424 |||||||||||||||||||||| Sbjct: 59454 ggagtgtctaagggcatccatg 59475
>ref|XM_552922.1| Anopheles gambiae str. PEST ENSANGP00000027726 (ENSANGG00000023827), partial mRNA Length = 708 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gcattctgcccaatgacgaaa 87 ||||||||||||||||||||| Sbjct: 658 gcattctgcccaatgacgaaa 678
>gb|AC121820.2| Mus musculus BAC clone RP23-460N4 from 6, complete sequence Length = 178653 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cagatggaggcatcttctgt 349 |||||||||||||||||||| Sbjct: 24349 cagatggaggcatcttctgt 24368
>gb|AC002461.2| Homo sapiens BAC clone CTA-204I16 from 7, complete sequence Length = 197273 Score = 40.1 bits (20), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 4 tttcccttattattnataaaatt 26 |||||||||||||| |||||||| Sbjct: 85026 tttcccttattattgataaaatt 85004
>emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chromosome 9 Contains pseudogene similar to part of a novel gene (KIAA1688), a solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 (SLC25A6) (ANT3) pseudogene and a CpG island, complete sequence Length = 169550 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 atgacaactgcacctacagttgca 69 ||||||| |||||||||||||||| Sbjct: 83532 atgacaaatgcacctacagttgca 83555
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 tagggatcggtttccagatg 335 |||||||||||||||||||| Sbjct: 711308 tagggatcggtttccagatg 711327
>gb|AC161615.4| Pan troglodytes BAC clone CH251-549K12 from chromosome 7, complete sequence Length = 193692 Score = 40.1 bits (20), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 4 tttcccttattattnataaaatt 26 |||||||||||||| |||||||| Sbjct: 105365 tttcccttattattgataaaatt 105387
>gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, complete sequence Length = 159520 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 aagatggggagacagtgggc 278 |||||||||||||||||||| Sbjct: 63113 aagatggggagacagtgggc 63132
>dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34H20, TM0134, complete sequence Length = 132605 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 gggcgagagcgcagcggaag 567 |||||||||||||||||||| Sbjct: 69437 gggcgagagcgcagcggaag 69418
>emb|AL928732.7| Mouse DNA sequence from clone RP23-403C18 on chromosome 2, complete sequence Length = 149273 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 acagagaagatgtgtagctc 382 |||||||||||||||||||| Sbjct: 5955 acagagaagatgtgtagctc 5974 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,898,816 Number of Sequences: 3902068 Number of extensions: 4898816 Number of successful extensions: 79419 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79300 Number of HSP's gapped (non-prelim): 106 length of query: 580 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 557 effective length of database: 17,143,297,704 effective search space: 9548816821128 effective search space used: 9548816821128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
