ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24j05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 59 4e-09
2CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 58 8e-09
3CARB_SYNY3 (Q55756) Carbamoyl-phosphate synthase large chain (EC... 30 3.0
4KPRS_BACSU (P14193) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 29 3.9
5CARB_ANASP (Q8YQL2) Carbamoyl-phosphate synthase large chain (EC... 28 6.7
6FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial... 28 8.8

>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = -1

Query: 423 VQTYVMFYDRQTGYYPGAKVLASLQTGKTTEELGLLSPDQGIAAAKELLR-QNKLPGFFI 247
           V+ ++ +++ Q+  Y G KVL S     +T+  G L PD G   A  +L+ Q KL G F+
Sbjct: 221 VEQFLKYFEEQSSNYHGGKVLVSF----STDSSGGLKPDNGFFRACSILKKQGKLHGIFV 276

Query: 246 WSADSSKQXDYKFTYETRAQEIVAN 172
           WSAD S   +  F YE +AQ ++A+
Sbjct: 277 WSADDSLMSNNVFRYEMQAQSMLAS 301



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>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
 Frame = -1

Query: 423 VQTYVMFYDRQTGYYPGAKVLASLQTGKTTEELGLLSPDQGIAAAKELLR-QNKLPGFFI 247
           V+ ++ +++ Q   YPG KVL S     +T+  G L P  G   A  +L+ Q KL G F+
Sbjct: 195 VEQFLKYFEMQRSNYPGGKVLVSF----STDNSGGLKPRNGFFDACSILKKQGKLHGIFV 250

Query: 246 WSADSSKQXDYKFTYETRAQEIVAN 172
           WSAD S   +  F YE +AQ ++A+
Sbjct: 251 WSADDSLMSNDVFKYEMQAQSLLAS 275



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>CARB_SYNY3 (Q55756) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1081

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -1

Query: 411  VMFYDRQTGYYPGAKVLASLQTGKTTEELGLLSP--DQGIAAAKELLRQNKLPG 256
            V +  + TG  P AK+ + + +GKT EELG+      Q +A  + +L  +K PG
Sbjct: 858  VPYVSKATGR-PLAKIASLVMSGKTLEELGVTEEFIPQHVAVKEAVLPFSKFPG 910



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>KPRS_BACSU (P14193) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 317

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 405 FYDRQTGYYPGAKVLASLQTGKTTEELGLLSPDQ-GIAAAKELLRQNKLP 259
           F+D    +  G  +L     GK  E++ ++SPD  G+  A++L  + K P
Sbjct: 143 FFDIPIDHLMGVPILGEYFEGKNLEDIVIVSPDHGGVTRARKLADRLKAP 192



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>CARB_ANASP (Q8YQL2) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1104

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 411  VMFYDRQTGYYPGAKVLASLQTGKTTEELGLLSP--DQGIAAAKELLRQNKLPG 256
            V F  + TG  P AK+ + + +GKT EEL          IA  + +L  NK PG
Sbjct: 880  VPFVSKATGV-PLAKLASLIMSGKTLEELNFTQEVIPSHIAVKEAVLPFNKFPG 932



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>FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial precursor|
           (EC 2.1.2.9) (MtFMT)
          Length = 385

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 291 PRRCLGPERAXPAPRWSCRS-ASWRAPWRRGS 383
           PRRC GP  A   PR SC+S A +    RR S
Sbjct: 4   PRRCWGPWLAGRRPRCSCQSPAGFSGKDRRSS 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,502,595
Number of Sequences: 219361
Number of extensions: 787803
Number of successful extensions: 1894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1893
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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