ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24j04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PFA4_KLULA (Q6CUB5) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Prot... 32 1.0
2PFA4_ASHGO (Q75CB4) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Prot... 31 2.3
31A110_ARATH (Q9LQ10) Probable aminotransferase ACS10 (EC 2.6.1.-) 30 5.1
4EFR1_CALJA (P61553) ERV-FRD provirus ancestral Env polyprotein p... 30 5.1
5CLTR2_MOUSE (Q920A1) Cysteinyl leukotriene receptor 2 (CysLTR2) 29 8.7

>PFA4_KLULA (Q6CUB5) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 4)
          Length = 377

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +3

Query: 249 EWWKDHCTLIRWRFPKIARHAPASRSCIRVFENHCRVWT*N*SAVHMMLPGIANFAQW 422
           E W ++C   R   P+ A H      C+   ++HC  WT N    H   P    F  W
Sbjct: 74  EEWHNYCKKCRVYKPERAHHCKTCNQCVLAMDHHC-PWTLN-CVGHSNFPHFMRFLFW 129



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>PFA4_ASHGO (Q75CB4) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 4)
          Length = 375

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 255 WKDHCTLIRWRFPKIARHAPASRSCIRVFENHCRVWT*N*SAVHMMLP 398
           W+++CT      P+   H      C+ V ++HC  WT N   +  + P
Sbjct: 76  WQNYCTKCETYKPERTHHCKRCNQCVLVMDHHC-PWTMNCLGLQYLAP 122



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>1A110_ARATH (Q9LQ10) Probable aminotransferase ACS10 (EC 2.6.1.-)|
          Length = 557

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 23/68 (33%), Positives = 29/68 (42%)
 Frame = -1

Query: 343 SNTRMQLRLAGACLAILGNLHLINVQWSFHHSTRRKLYTAVIQMGHM*CRSTDILVAVMG 164
           S     + +   CLA  GN  L+    S  +    K  T V  + H+ CRS D     M 
Sbjct: 242 SGASSAIEILSFCLADSGNAFLVPTPCSPGYDRDVKWRTGV-DIIHVPCRSADNFNMSMV 300

Query: 163 FLDRAVYQ 140
            LDRA YQ
Sbjct: 301 VLDRAFYQ 308



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>EFR1_CALJA (P61553) ERV-FRD provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (Syncytin-2) [Contains: Surface
           protein (SU); Transmembrane protein (TM)]
          Length = 538

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +3

Query: 6   YSWASLLFSLVRVSWNALTNIHVNYSGLQPEPVISNQLFNNA--IVI**TALSRKPITAT 179
           Y W   L  L+R++ + L+ +  ++  ++ EP I   +F N   I I    ++ K    T
Sbjct: 76  YQWDPNLKGLIRLANSLLSKVKQDFPDIRKEPPIFGPIFTNVNLIGIAPICVTAKRKDGT 135

Query: 180 RISVLRHHICPIWMTAVYSLRRVEWWKDHCTLIRWRFPK 296
            +  L   +C + +T   + +  + +  +    + RFPK
Sbjct: 136 NVGTLPSTVCNVTLTVDPNQQTYQKYAHNQFHHQPRFPK 174



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>CLTR2_MOUSE (Q920A1) Cysteinyl leukotriene receptor 2 (CysLTR2)|
          Length = 309

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 150 ALSRKPITATRISVLRHHICPIWMTAVYSLRRVEWWKDHCTLIRWRFPKIARHAPASRSC 329
           A  RK +T   I+++   +C +   A+ +L  V W KD C  +  +   I     A+ SC
Sbjct: 224 AAHRKALTTIVIAMITFLLCFLPYHALRTLHLVTWDKDSCGDVLHKATVITLTMAAANSC 283

Query: 330 IRVF 341
              F
Sbjct: 284 FNPF 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,853,807
Number of Sequences: 219361
Number of extensions: 2252589
Number of successful extensions: 5436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5428
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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