ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24j03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF182197.1|AF182197 Hordeum vulgare RNase S-like protein prec... 692 0.0
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
3dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
4dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
5dbj|AK109411.2| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
6dbj|AK119171.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
7dbj|AK104648.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
8dbj|AK104456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
9dbj|AK104390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
10dbj|AK104263.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
11dbj|AK104261.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
12dbj|AK104237.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
13dbj|AK061442.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
14dbj|AK060036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
15dbj|AK059757.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
16gb|AY104404.1| Zea mays PCO098786 mRNA sequence 84 4e-13
17gb|U66241.1|ZMU66241 Zea mays S-like RNase (kin1) mRNA, complete... 84 4e-13
18ref|NM_191917.1| Oryza sativa (japonica cultivar-group), predic... 40 4.7
19gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJN... 40 4.7
20gb|AC122403.3| Mus musculus BAC clone RP24-112A10 from chromosom... 40 4.7
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.7
22gb|AC147677.4| Canis Familiaris, clone XX-25A1, complete sequence 40 4.7
23gb|AC124196.4| Mus musculus BAC clone RP23-296L12 from chromosom... 40 4.7
24emb|AL596219.2| Human DNA sequence from clone RP11-659P12 on chr... 40 4.7
25emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 40 4.7
26ref|XM_662573.1| Cryptosporidium hominis TU502 20k cyclophilin (... 40 4.7
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
29dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
30dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
31dbj|AK102689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
32emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 4.7
33emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 4.7
34emb|AL935155.13| Mouse DNA sequence from clone RP23-334M3 on chr... 40 4.7

>gb|AF182197.1|AF182197 Hordeum vulgare RNase S-like protein precursor (rsh1) gene, complete
            cds
          Length = 3758

 Score =  692 bits (349), Expect = 0.0
 Identities = 356/357 (99%), Gaps = 1/357 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    acacgagcgagatgaacatctgaaaaa-ggaaagaacataattccatgcatatactagta 59
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3312 acacgagcgagatgaacatctgaaaaaaggaaagaacataattccatgcatatactagta 3253

                                                                        
Query: 60   cgtattaattattcattggaacgcaacccacaagacgaggcctgatcggctaccaatctg 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3252 cgtattaattattcattggaacgcaacccacaagacgaggcctgatcggctaccaatctg 3193

                                                                        
Query: 120  cagctgtagctcagtatcccatggcggcgccggccatctcaaatgcttcggcaaaggaca 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3192 cagctgtagctcagtatcccatggcggcgccggccatctcaaatgcttcggcaaaggaca 3133

                                                                        
Query: 180  cggaggacgcggcctgctttagcatccacttcttgaaggggtggaagaggatctcgtcgg 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3132 cggaggacgcggcctgctttagcatccacttcttgaaggggtggaagaggatctcgtcgg 3073

                                                                        
Query: 240  agcacgtgaacttctgcggtttcgggcactcgatgagcgttttggcgtcctcggccacgc 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3072 agcacgtgaacttctgcggtttcgggcactcgatgagcgttttggcgtcctcggccacgc 3013

                                                                     
Query: 300  agatgaagatctggtacagctggaacttatcgaacggccctttgctacactggatca 356
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3012 agatgaagatctggtacagctggaacttatcgaacggccctttgctacactggatca 2956



 Score =  216 bits (109), Expect = 4e-53
 Identities = 133/141 (94%)
 Strand = Plus / Minus

                                                                        
Query: 127  agctcagtatcccatggcggcgccggccatctcaaatgcttcggcaaaggacacggagga 186
            ||||||||||||||||||||||||||||||||| |||||||| ||  ||||||| |||||
Sbjct: 3754 agctcagtatcccatggcggcgccggccatctcgaatgcttcagcgtaggacaccgagga 3695

                                                                        
Query: 187  cgcggcctgctttagcatccacttcttgaaggggtggaagaggatctcgtcggagcacgt 246
            ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3694 cgcggactgctttagcatccacttcttgaaggggtggaagatgatctcgtcggagcacgt 3635

                                 
Query: 247  gaacttctgcggtttcgggca 267
            |||||| ||||||||||||||
Sbjct: 3634 gaacttttgcggtttcgggca 3614



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Plus

                                                                            
Query: 200      agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
                ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 20864227 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 20864286

                                                                            
Query: 257      ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
                ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 20864287 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 20864346

                                                        
Query: 317      agctggaacttatcgaacggccctttgctacactggatca 356
                ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 20864347 agctggaacttgttgaacgggcccttgctgcactggatca 20864386



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>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0229B10
          Length = 114509

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Plus

                                                                         
Query: 200   agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
             ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 56453 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 56512

                                                                         
Query: 257   ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
             ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 56513 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 56572

                                                     
Query: 317   agctggaacttatcgaacggccctttgctacactggatca 356
             ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 56573 agctggaacttgttgaacgggcccttgctgcactggatca 56612



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>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0569E11
          Length = 157319

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Plus

                                                                          
Query: 200    agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
              ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 139256 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 139315

                                                                          
Query: 257    ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
              ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 139316 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 139375

                                                      
Query: 317    agctggaacttatcgaacggccctttgctacactggatca 356
              ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 139376 agctggaacttgttgaacgggcccttgctgcactggatca 139415



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>dbj|AK109411.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E09, full
           insert sequence
          Length = 1114

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 200 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
           ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713

                                                                       
Query: 257 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
           ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653

                                                   
Query: 317 agctggaacttatcgaacggccctttgctacactggatca 356
           ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatca 613



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>dbj|AK119171.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H08, full
           insert sequence
          Length = 1096

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 200 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
           ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 771 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 712

                                                                       
Query: 257 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
           ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 711 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 652

                                                   
Query: 317 agctggaacttatcgaacggccctttgctacactggatca 356
           ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 651 agctggaacttgttgaacgggcccttgctgcactggatca 612



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>dbj|AK104648.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-H05, full
           insert sequence
          Length = 1114

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 200 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
           ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713

                                                                       
Query: 257 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
           ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653

                                                   
Query: 317 agctggaacttatcgaacggccctttgctacactggatca 356
           ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatca 613



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>dbj|AK104456.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A10, full
           insert sequence
          Length = 1077

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 200 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
           ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 767 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 708

                                                                       
Query: 257 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
           ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 707 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 648

                                                   
Query: 317 agctggaacttatcgaacggccctttgctacactggatca 356
           ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 647 agctggaacttgttgaacgggcccttgctgcactggatca 608



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>dbj|AK104390.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H04, full
           insert sequence
          Length = 1085

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 200 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
           ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713

                                                                       
Query: 257 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
           ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653

                                                   
Query: 317 agctggaacttatcgaacggccctttgctacactggatca 356
           ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatca 613



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>dbj|AK104263.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D05, full
           insert sequence
          Length = 1114

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 200 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
           ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713

                                                                       
Query: 257 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
           ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653

                                                   
Query: 317 agctggaacttatcgaacggccctttgctacactggatca 356
           ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatca 613



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>dbj|AK104261.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B09, full
           insert sequence
          Length = 1140

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 200 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
           ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713

                                                                       
Query: 257 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
           ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653

                                                   
Query: 317 agctggaacttatcgaacggccctttgctacactggatca 356
           ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatca 613



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>dbj|AK104237.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H08, full
           insert sequence
          Length = 1173

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 200 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
           ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713

                                                                       
Query: 257 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
           ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653

                                                   
Query: 317 agctggaacttatcgaacggccctttgctacactggatca 356
           ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatca 613



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>dbj|AK061442.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C07, full
           insert sequence
          Length = 1151

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 200 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
           ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713

                                                                       
Query: 257 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
           ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653

                                                   
Query: 317 agctggaacttatcgaacggccctttgctacactggatca 356
           ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatca 613



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>dbj|AK060036.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A10, full
           insert sequence
          Length = 1127

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 200 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
           ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 748 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 689

                                                                       
Query: 257 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
           ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 688 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 629

                                                   
Query: 317 agctggaacttatcgaacggccctttgctacactggatca 356
           ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 628 agctggaacttgttgaacgggcccttgctgcactggatca 589



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>dbj|AK059757.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-D06, full
           insert sequence
          Length = 1173

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 131/160 (81%), Gaps = 3/160 (1%)
 Strand = Plus / Minus

                                                                       
Query: 200 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 256
           ||||||||||||||||| |||||||||||||| ||||||  ||| ||| ||   |||  |
Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713

                                                                       
Query: 257 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 316
           ||  | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| 
Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653

                                                   
Query: 317 agctggaacttatcgaacggccctttgctacactggatca 356
           ||||||||||| | |||||| || ||||| ||||||||||
Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatca 613



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>gb|AY104404.1| Zea mays PCO098786 mRNA sequence
          Length = 1018

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                       
Query: 193 ctgctttagcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaactt 252
           |||||| ||||||||||||||||||||||||||||||||||| | |||||| ||| ||| 
Sbjct: 729 ctgcttgagcatccacttcttgaaggggtggaagaggatctccttggagcaggtgtactg 670

                 
Query: 253 ctgcgg 258
           ||||||
Sbjct: 669 ctgcgg 664



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>gb|U66241.1|ZMU66241 Zea mays S-like RNase (kin1) mRNA, complete cds
          Length = 988

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                       
Query: 193 ctgctttagcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaactt 252
           |||||| ||||||||||||||||||||||||||||||||||| | |||||| ||| ||| 
Sbjct: 717 ctgcttgagcatccacttcttgaaggggtggaagaggatctccttggagcaggtgtactg 658

                 
Query: 253 ctgcgg 258
           ||||||
Sbjct: 657 ctgcgg 652



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>ref|NM_191917.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 552

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 164 gcttcggcaaaggacacgga 183
           ||||||||||||||||||||
Sbjct: 31  gcttcggcaaaggacacgga 50



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>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete
              sequence
          Length = 151269

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    ctgctttagcatccacttct 212
              ||||||||||||||||||||
Sbjct: 122012 ctgctttagcatccacttct 122031



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>gb|AC122403.3| Mus musculus BAC clone RP24-112A10 from chromosome 16, complete
             sequence
          Length = 169481

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aaaggaaagaacataattcc 44
             ||||||||||||||||||||
Sbjct: 99893 aaaggaaagaacataattcc 99874



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 193      ctgctttagcatccacttct 212
                ||||||||||||||||||||
Sbjct: 20203928 ctgctttagcatccacttct 20203947



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>gb|AC147677.4| Canis Familiaris, clone XX-25A1, complete sequence
          Length = 154021

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    agatgaacatctgaaaaagg 29
             ||||||||||||||||||||
Sbjct: 95615 agatgaacatctgaaaaagg 95596



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>gb|AC124196.4| Mus musculus BAC clone RP23-296L12 from chromosome 13, complete
             sequence
          Length = 193553

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tgaaaaaggaaagaacataa 40
             ||||||||||||||||||||
Sbjct: 88477 tgaaaaaggaaagaacataa 88458



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>emb|AL596219.2| Human DNA sequence from clone RP11-659P12 on chromosome 6, complete
             sequence
          Length = 85151

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 24    aaaaggaaagaacataattccatg 47
             ||||||||||||||| ||||||||
Sbjct: 28992 aaaaggaaagaacatgattccatg 28969



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>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     atgcatatactagtacgtat 64
              ||||||||||||||||||||
Sbjct: 158901 atgcatatactagtacgtat 158882



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>ref|XM_662573.1| Cryptosporidium hominis TU502 20k cyclophilin (Chro.20441), partial
           mRNA
          Length = 519

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 ccctttgctacactggatca 356
           ||||||||||||||||||||
Sbjct: 155 ccctttgctacactggatca 174



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 45       atgcatatactagtacgtat 64
                ||||||||||||||||||||
Sbjct: 30891380 atgcatatactagtacgtat 30891361



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 193      ctgctttagcatccacttct 212
                ||||||||||||||||||||
Sbjct: 20196955 ctgctttagcatccacttct 20196974



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 164      gcttcggcaaaggacacgga 183
                ||||||||||||||||||||
Sbjct: 27239188 gcttcggcaaaggacacgga 27239169



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>dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0063G05
          Length = 182681

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gcttcggcaaaggacacgga 183
             ||||||||||||||||||||
Sbjct: 19705 gcttcggcaaaggacacgga 19686



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>dbj|AK102689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102P10, full
           insert sequence
          Length = 1168

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 164 gcttcggcaaaggacacgga 183
           ||||||||||||||||||||
Sbjct: 117 gcttcggcaaaggacacgga 136



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 289     ctcggccacgcagatgaagatctg 312
               ||||||||||| ||||||||||||
Sbjct: 1851044 ctcggccacgcggatgaagatctg 1851067



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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    atgcatatactagtacgtat 64
             ||||||||||||||||||||
Sbjct: 67971 atgcatatactagtacgtat 67952



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>emb|AL935155.13| Mouse DNA sequence from clone RP23-334M3 on chromosome 2, complete
              sequence
          Length = 123205

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     tattaattattcattggaac 81
              ||||||||||||||||||||
Sbjct: 105496 tattaattattcattggaac 105477


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,977,641
Number of Sequences: 3902068
Number of extensions: 2977641
Number of successful extensions: 56444
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56239
Number of HSP's gapped (non-prelim): 204
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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