ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24j01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472679.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 450 Score = 270 bits (136), Expect = 5e-69 Identities = 256/296 (86%) Strand = Plus / Minus Query: 240 ttacatcttgaaccgaacaactacgcatgatatatcatctttactgtctcttttcaccgc 299 ||||||| ||||||||||||| ||||| ||||| || ||||||||||||||||||| || Sbjct: 450 ttacatcctgaaccgaacaacaacgcacgatatgtcgtctttactgtctcttttcaatgc 391 Query: 300 ttcggcgattaattgcttggcagctgtttgtgggtccttgtattttttcaccacatcaac 359 || || |||||||||||||||||| |||||| |||||| || |||| |||||||||| Sbjct: 390 ctcagctgttaattgcttggcagctgcttgtggatccttgaatcttttggccacatcaac 331 Query: 360 tgcttcccggttgttcattaccttccaaactccatcgcttgcaaggacaactagctcagc 419 | ||| | ||||||||||||||||||| ||||||||| |||||||||| |||||||| Sbjct: 330 gacctcctgattgttcattaccttccaaagtccatcgctcgcaaggacaagaagctcagc 271 Query: 420 agtgtgatcaatatcttcgactttcacatcaggctctgatttcaaaagtgattttaggtt 479 ||||| ||| |||||||| ||||| | |||||||||||| ||||| ||||| ||||| || Sbjct: 270 agtgtaatctatatcttcaacttttatatcaggctctgacttcaatagtgactttagatt 211 Query: 480 cctgtccccaaaagctctggacacggccaactgaccacagactctaggaacatctc 535 |||||| |||||||||||||| || ||||||||||||||||||| |||||||||| Sbjct: 210 cctgtcgccaaaagctctggagacagccaactgaccacagactcggggaacatctc 155
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 174 bits (88), Expect = 2e-40 Identities = 142/160 (88%) Strand = Plus / Plus Query: 379 accttccaaactccatcgcttgcaaggacaactagctcagcagtgtgatcaatatcttcg 438 |||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||||||| Sbjct: 113552 accttccaaagtccatcgctcgcaaggacaagaagctcagcagtgtaatctatatcttca 113611 Query: 439 actttcacatcaggctctgatttcaaaagtgattttaggttcctgtccccaaaagctctg 498 ||||| | |||||||||||| ||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 113612 acttttatatcaggctctgacttcaatagtgactttagattcctgtcgccaaaagctctg 113671 Query: 499 gacacggccaactgaccacagactctaggaacatctcctg 538 || || ||||||||||||||||||| ||||||||||||| Sbjct: 113672 gagacagccaactgaccacagactcggggaacatctcctg 113711 Score = 109 bits (55), Expect = 1e-20 Identities = 121/143 (84%) Strand = Plus / Plus Query: 240 ttacatcttgaaccgaacaactacgcatgatatatcatctttactgtctcttttcaccgc 299 ||||||| ||||||||||||| ||||| ||||| || ||||||||||||||||||| || Sbjct: 113301 ttacatcctgaaccgaacaacaacgcacgatatgtcgtctttactgtctcttttcaatgc 113360 Query: 300 ttcggcgattaattgcttggcagctgtttgtgggtccttgtattttttcaccacatcaac 359 || || |||||||||||||||||| |||||| |||||| || |||| |||||||||| Sbjct: 113361 ctcagctgttaattgcttggcagctgcttgtggatccttgaatcttttggccacatcaac 113420 Query: 360 tgcttcccggttgttcattacct 382 | ||| | ||||||||||||| Sbjct: 113421 gacctcctgattgttcattacct 113443 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 39 catgtaccctggaatcgcaaaacaaagaattctagcatatttatatatcaacttacaatc 98 |||||||| | ||||||| ||||||| | ||||||| |||||||||| ||| || ||| Sbjct: 113099 catgtacctttgaatcgccaaacaaatacttctagcgcatttatatatgaacatataatg 113158 Query: 99 gaactaacacatcatttacagccagcattccag 131 || | ||||||||||||||| ||| ||| |||| Sbjct: 113159 gagccaacacatcatttacaaccaacatcccag 113191
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 174 bits (88), Expect = 2e-40 Identities = 142/160 (88%) Strand = Plus / Plus Query: 379 accttccaaactccatcgcttgcaaggacaactagctcagcagtgtgatcaatatcttcg 438 |||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||||||| Sbjct: 22509797 accttccaaagtccatcgctcgcaaggacaagaagctcagcagtgtaatctatatcttca 22509856 Query: 439 actttcacatcaggctctgatttcaaaagtgattttaggttcctgtccccaaaagctctg 498 ||||| | |||||||||||| ||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 22509857 acttttatatcaggctctgacttcaatagtgactttagattcctgtcgccaaaagctctg 22509916 Query: 499 gacacggccaactgaccacagactctaggaacatctcctg 538 || || ||||||||||||||||||| ||||||||||||| Sbjct: 22509917 gagacagccaactgaccacagactcggggaacatctcctg 22509956 Score = 109 bits (55), Expect = 1e-20 Identities = 121/143 (84%) Strand = Plus / Plus Query: 240 ttacatcttgaaccgaacaactacgcatgatatatcatctttactgtctcttttcaccgc 299 ||||||| ||||||||||||| ||||| ||||| || ||||||||||||||||||| || Sbjct: 22509546 ttacatcctgaaccgaacaacaacgcacgatatgtcgtctttactgtctcttttcaatgc 22509605 Query: 300 ttcggcgattaattgcttggcagctgtttgtgggtccttgtattttttcaccacatcaac 359 || || |||||||||||||||||| |||||| |||||| || |||| |||||||||| Sbjct: 22509606 ctcagctgttaattgcttggcagctgcttgtggatccttgaatcttttggccacatcaac 22509665 Query: 360 tgcttcccggttgttcattacct 382 | ||| | ||||||||||||| Sbjct: 22509666 gacctcctgattgttcattacct 22509688 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 39 catgtaccctggaatcgcaaaacaaagaattctagcatatttatatatcaacttacaatc 98 |||||||| | ||||||| ||||||| | ||||||| |||||||||| ||| || ||| Sbjct: 22509344 catgtacctttgaatcgccaaacaaatacttctagcgcatttatatatgaacatataatg 22509403 Query: 99 gaactaacacatcatttacagccagcattccag 131 || | ||||||||||||||| ||| ||| |||| Sbjct: 22509404 gagccaacacatcatttacaaccaacatcccag 22509436
>gb|AY106019.1| Zea mays PCO139265 mRNA sequence Length = 838 Score = 141 bits (71), Expect = 3e-30 Identities = 130/147 (88%), Gaps = 2/147 (1%) Strand = Plus / Minus Query: 411 tagctcagcagtgtgatcaatatcttcgactttcacatcaggctctgatttcaaaagtga 470 |||||| ||||||||||| || ||||||| ||| | ||||||||||||| |||| ||||| Sbjct: 837 tagctcggcagtgtgatctatgtcttcgatttttatatcaggctctgatctcaatagtga 778 Query: 471 ttttaggttcctgtccccaaaagctctgg-aca-cggccaactgaccacagactctagga 528 |||||| |||||||| ||||||||||||| | | | |||||||||||||| |||| ||| Sbjct: 777 ttttagattcctgtctccaaaagctctggnagaccagccaactgaccacatactcgggga 718 Query: 529 acatctcctggcatatttgaaacaaaa 555 ||||||||||||||||||||||||||| Sbjct: 717 acatctcctggcatatttgaaacaaaa 691
>gb|AY830123.1| Zea mays putative protein phosphatase type 2c mRNA, complete cds Length = 739 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 472 tttaggttcctgtccccaaaagctctggacacggccaactgaccacagactctaggaaca 531 ||||| |||||||| |||||||||||||| || |||||||||||||| |||| |||||| Sbjct: 729 tttagattcctgtctccaaaagctctggagacagccaactgaccacatactcggggaaca 670 Query: 532 tctcctggcatatttgaaacaaaa 555 |||||||||||||||||||||||| Sbjct: 669 tctcctggcatatttgaaacaaaa 646
>ref|XM_473840.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 954 Score = 48.1 bits (24), Expect = 0.031 Identities = 39/44 (88%) Strand = Plus / Minus Query: 361 gcttcccggttgttcattaccttccaaactccatcgcttgcaag 404 |||||| |||| |||||||||||||| | ||||||||| ||||| Sbjct: 833 gcttcctggttcttcattaccttccatagtccatcgctggcaag 790
>dbj|AK070129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A13, full insert sequence Length = 1585 Score = 48.1 bits (24), Expect = 0.031 Identities = 39/44 (88%) Strand = Plus / Minus Query: 361 gcttcccggttgttcattaccttccaaactccatcgcttgcaag 404 |||||| |||| |||||||||||||| | ||||||||| ||||| Sbjct: 1107 gcttcctggttcttcattaccttccatagtccatcgctggcaag 1064
>ref|NM_103195.2| Arabidopsis thaliana catalytic/ protein phosphatase type 2C AT1G34750 mRNA, complete cds Length = 1140 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Minus Query: 271 atatcatctttactgtctcttttcaccgcttcgg 304 ||||||||||||||||||||| | | |||||||| Sbjct: 821 atatcatctttactgtctcttctaagcgcttcgg 788
>gb|AF370608.1|AF370608 Arabidopsis thaliana protein phosphatase type 2C-like protein (F21H2.4) mRNA, complete cds Length = 849 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Minus Query: 271 atatcatctttactgtctcttttcaccgcttcgg 304 ||||||||||||||||||||| | | |||||||| Sbjct: 821 atatcatctttactgtctcttctaagcgcttcgg 788
>emb|BX814714.1|CNS0AELM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZD05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1517 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Minus Query: 271 atatcatctttactgtctcttttcaccgcttcgg 304 ||||||||||||||||||||| | | |||||||| Sbjct: 1194 atatcatctttactgtctcttctaagcgcttcgg 1161
>gb|AC018460.2|AC018460 Arabidopsis thaliana chromosome I BAC F11O6 genomic sequence, complete sequence Length = 110619 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Minus Query: 271 atatcatctttactgtctcttttcaccgcttcgg 304 ||||||||||||||||||||| | | |||||||| Sbjct: 93922 atatcatctttactgtctcttctaagcgcttcgg 93889
>gb|AY186999.1| Drosophila virilis unc-5 (unc-5) gene, partial cds; and ap (ap), vlc (vlc), CG17337 (CG17337), and CG13533 (CG13533) genes, complete cds Length = 83253 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 416 cagcagtgtgatcaatatcttc 437 |||||||||||||||||||||| Sbjct: 57799 cagcagtgtgatcaatatcttc 57778
>gb|AC007894.2|F21H2 Arabidopsis thaliana chromosome 1 BAC F21H2 sequence, complete sequence Length = 88512 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Minus Query: 271 atatcatctttactgtctcttttcaccgcttcgg 304 ||||||||||||||||||||| | | |||||||| Sbjct: 21774 atatcatctttactgtctcttctaagcgcttcgg 21741
>gb|AC174468.2| Medicago truncatula chromosome 2 BAC clone mth2-89f22, complete sequence Length = 89512 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 268 gatatatcatctttactgtctctttt 293 ||||||||||||||||| |||||||| Sbjct: 81847 gatatatcatctttactttctctttt 81822 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 378 taccttccaaactccatcgcttgcaagga 406 ||||||||||| |||||| |||||||||| Sbjct: 81464 taccttccaaagtccatcacttgcaagga 81436
>gb|AC125216.3| Mus musculus BAC clone RP23-109J14 from 1, complete sequence Length = 218169 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 tcctgtccccaaaagctctgg 499 ||||||||||||||||||||| Sbjct: 188239 tcctgtccccaaaagctctgg 188259
>emb|CR936441.6| Mouse DNA sequence from clone RP23-285D5 on chromosome X, complete sequence Length = 112051 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 456 tgatttcaaaagtgattttag 476 ||||||||||||||||||||| Sbjct: 60878 tgatttcaaaagtgattttag 60898
>emb|AL954352.10| Mouse DNA sequence from clone RP23-159J7 on chromosome 4, complete sequence Length = 178280 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 gacaactagctcagcagtgtg 425 ||||||||||||||||||||| Sbjct: 163965 gacaactagctcagcagtgtg 163985
>gb|AC121900.2| Mus musculus BAC clone RP24-167E15 from 7, complete sequence Length = 170266 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 ttttaggttcctgtccccaa 490 |||||||||||||||||||| Sbjct: 100906 ttttaggttcctgtccccaa 100925
>gb|AY427593.1| Mus musculus map chr18_148.1 peptidylprolyl isomerase A (Ppia) pseudogene, complete sequence Length = 696 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 actgtctcttttcaccgctt 301 |||||||||||||||||||| Sbjct: 13 actgtctcttttcaccgctt 32
>ref|NG_005226.1| Mus musculus peptidylprolyl isomerase A pseudogene chr18_148.1 (LOC382096) on chromosome 18 Length = 696 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 actgtctcttttcaccgctt 301 |||||||||||||||||||| Sbjct: 13 actgtctcttttcaccgctt 32
>emb|CR848031.5| Zebrafish DNA sequence from clone DKEY-288I10 in linkage group 14, complete sequence Length = 160671 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ttttgctgttataattcctt 197 |||||||||||||||||||| Sbjct: 26391 ttttgctgttataattcctt 26410
>emb|AL121877.14|HSBB140E4 Human DNA sequence from clone RP13-140E4 on chromosome X Contains a staufen, RNA binding protein homolog 2, (Drosophila) (STAU2) pseudogene and an ubiquitin specific protease 1 (USP1) pseudogene, complete sequence Length = 163253 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 accacagactctaggaacat 532 |||||||||||||||||||| Sbjct: 133557 accacagactctaggaacat 133538
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 catctttactgtctcttttc 294 |||||||||||||||||||| Sbjct: 260350 catctttactgtctcttttc 260331
>gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187921 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 tttgtgggtccttgtatttt 345 |||||||||||||||||||| Sbjct: 128259 tttgtgggtccttgtatttt 128240
>gb|AC007048.5| Arabidopsis thaliana chromosome 2 clone F23N11 map mi148, complete sequence Length = 61384 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 taccttccaaactccatcgcttgc 401 |||||||||||||||||| ||||| Sbjct: 17148 taccttccaaactccatcacttgc 17125
>gb|AC005278.2|F15K9 Arabidopsis thaliana chromosome 1 BAC F15K9 sequence, complete sequence Length = 71097 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 atcgcaaaacaaagaattct 71 |||||||||||||||||||| Sbjct: 55481 atcgcaaaacaaagaattct 55462
>emb|AL672153.3| Mouse DNA sequence from clone RP23-8C14 on chromosome 2, complete sequence Length = 137628 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 gattttaggttcctgtcccc 488 |||||||||||||||||||| Sbjct: 54657 gattttaggttcctgtcccc 54676
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aattctagcatatttatata 85 |||||||||||||||||||| Sbjct: 7600789 aattctagcatatttatata 7600770
>gb|AC012078.3|AC012078 Homo sapiens BAC clone RP11-539O22 from Y, complete sequence Length = 176872 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 accacagactctaggaacat 532 |||||||||||||||||||| Sbjct: 17580 accacagactctaggaacat 17561
>gb|AC002560.2|AC002560 Genomic sequence for Arabidopsis thaliana BAC F21B7 from chromosome I, complete sequence Length = 101176 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 atcgcaaaacaaagaattct 71 |||||||||||||||||||| Sbjct: 53504 atcgcaaaacaaagaattct 53485
>gb|AC006433.18|AC006433 Homo sapiens, clone RP11-6A1, complete sequence Length = 179563 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ttccttctgctctcggtgac 211 |||||||||||||||||||| Sbjct: 22983 ttccttctgctctcggtgac 22964
>dbj|AP004030.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_E05 Length = 101333 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aattctagcatatttatata 85 |||||||||||||||||||| Sbjct: 17549 aattctagcatatttatata 17530
>gb|AC158772.5| Mus musculus chromosome 18, clone RP23-291M14, complete sequence Length = 198851 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 actgtctcttttcaccgctt 301 |||||||||||||||||||| Sbjct: 83948 actgtctcttttcaccgctt 83929
>emb|BX901920.9| Zebrafish DNA sequence from clone CH211-184M19 in linkage group 20, complete sequence Length = 119227 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 ttgcttggcagctgtttgtg 331 |||||||||||||||||||| Sbjct: 30944 ttgcttggcagctgtttgtg 30963
>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete sequence Length = 302665 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 tttgtgggtccttgtatttt 345 |||||||||||||||||||| Sbjct: 209830 tttgtgggtccttgtatttt 209811
>gb|AC115692.6| Mus musculus chromosome 18, clone RP23-463G11, complete sequence Length = 227631 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 actgtctcttttcaccgctt 301 |||||||||||||||||||| Sbjct: 213221 actgtctcttttcaccgctt 213240
>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence Length = 180436 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 aactaacacatcatttacagccag 123 |||||||| ||||||||||||||| Sbjct: 26370 aactaacagatcatttacagccag 26347
>emb|BX004964.9| Zebrafish DNA sequence from clone DKEY-7I4, complete sequence Length = 211018 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 tcatctttactgtctctttt 293 |||||||||||||||||||| Sbjct: 200289 tcatctttactgtctctttt 200270
>emb|CT030180.3| M.truncatula DNA sequence from clone MTH2-177C12 on chromosome 3, complete sequence Length = 141577 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 cccggttgttcattaccttccaaa 388 |||||||||||||| ||||||||| Sbjct: 78176 cccggttgttcatttccttccaaa 78199
>emb|AL591514.7| Mouse DNA sequence from clone RP23-266L14 on chromosome 11, complete sequence Length = 229872 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 gaccacagactctaggaaca 531 |||||||||||||||||||| Sbjct: 103781 gaccacagactctaggaaca 103762
>emb|AL807821.8| Mouse DNA sequence from clone RP23-28N5 on chromosome X, complete sequence Length = 171451 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 66 aattctagcatatttatatatcaactta 93 ||||||| |||||||||||||| ||||| Sbjct: 73146 aattctaacatatttatatatccactta 73119
>emb|AL772293.7| Mouse DNA sequence from clone RP23-57D24 on chromosome 4, complete sequence Length = 251930 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 catatttatatatcaacttacaat 97 |||||||||||||| ||||||||| Sbjct: 75854 catatttatatatctacttacaat 75877
>gb|AC169792.2| Rhesus Macaque BAC CH250-117K11 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 186393 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 tgtattttttcaccacatcaactg 361 |||||||||| ||||||||||||| Sbjct: 68151 tgtattttttaaccacatcaactg 68174 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,471,919 Number of Sequences: 3902068 Number of extensions: 5471919 Number of successful extensions: 119402 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119244 Number of HSP's gapped (non-prelim): 155 length of query: 555 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 532 effective length of database: 17,143,297,704 effective search space: 9120234378528 effective search space used: 9120234378528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
