Clone Name | rbasd24i17 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197310.1| Oryza sativa (japonica cultivar-group) putative serine peptidase (OSJNBa0055O03.8), mRNA Length = 1509 Score = 333 bits (168), Expect = 4e-88 Identities = 273/308 (88%) Strand = Plus / Minus Query: 284 ccttgctggctcatggcattgtgatagccacaggtcgatgtgcttgacgatctgcttcct 343 ||||| ||| || ||||||||||||||||||| | |||||| || ||||||||||||| Sbjct: 1497 ccttgttggttcttggcattgtgatagccacaagctgatgtggctggcgatctgcttcct 1438 Query: 344 tactgtgttcaccgcttctggggacgtgcagtttgaagagtcaccttcaatcctgaaagg 403 |||||| |||| ||| | ||||| | ||| ||||||| ||||||||||||||||||||| Sbjct: 1437 cactgtgctcacggctgccggggatgagcaatttgaagggtcaccttcaatcctgaaagg 1378 Query: 404 aagctggggacatcctctcaaatcagtgccatgtccgcagttgctacatttgattatgta 463 || ||||| |||||||||| |||||||||||||||||| || ||||||||||||||||| Sbjct: 1377 gagttgggggcatcctctcagatcagtgccatgtccgcaatttctacatttgattatgta 1318 Query: 464 tgatggcatgccttccgatgatttctgtttggaggcatgacgccatggatcttgagagcc 523 ||||||||| || ||| ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 1317 tgatggcatatatttcgacgatttctgtttcgaggcatggcgccatggatcttgagagcc 1258 Query: 524 atttgtgaacacaattttagaagcagcaatacttgtccctccgtaatataagtttgtcat 583 |||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 1257 atttgtgaacactattttagaagcagcaattcttgtgcctccgtaatacaagtttgtcat 1198 Query: 584 gaacacat 591 |||||||| Sbjct: 1197 gaacacat 1190
>dbj|AK073197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022B10, full insert sequence Length = 2075 Score = 280 bits (141), Expect = 5e-72 Identities = 240/273 (87%) Strand = Plus / Minus Query: 275 tcaccacgcccttgctggctcatggcattgtgatagccacaggtcgatgtgcttgacgat 334 |||||| ||||||| ||| || ||||||||||||||||||| | |||||| || |||| Sbjct: 1836 tcaccatgcccttgttggttcttggcattgtgatagccacaagctgatgtggctggcgat 1777 Query: 335 ctgcttccttactgtgttcaccgcttctggggacgtgcagtttgaagagtcaccttcaat 394 ||||||||| |||||| |||| ||| | ||||| | ||| ||||||| |||||||||||| Sbjct: 1776 ctgcttcctcactgtgctcacggctgccggggatgagcaatttgaagggtcaccttcaat 1717 Query: 395 cctgaaaggaagctggggacatcctctcaaatcagtgccatgtccgcagttgctacattt 454 ||||||||| || ||||| |||||||||| |||||||||||||||||| || |||||||| Sbjct: 1716 cctgaaagggagttgggggcatcctctcagatcagtgccatgtccgcaatttctacattt 1657 Query: 455 gattatgtatgatggcatgccttccgatgatttctgtttggaggcatgacgccatggatc 514 |||||||||||||||||| || ||| ||||||||||| |||||||| ||||||||||| Sbjct: 1656 gattatgtatgatggcatatatttcgacgatttctgtttcgaggcatggcgccatggatc 1597 Query: 515 ttgagagccatttgtgaacacaattttagaagc 547 ||||||||||||||||||||| ||||||||||| Sbjct: 1596 ttgagagccatttgtgaacactattttagaagc 1564 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 547 cagcaatacttgtccctccgtaatataagtttgtcatgaacacat 591 ||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 1270 cagcaattcttgtgcctccgtaatacaagtttgtcatgaacacat 1226
>gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete sequence Length = 82909 Score = 123 bits (62), Expect = 7e-25 Identities = 80/86 (93%) Strand = Plus / Minus Query: 386 accttcaatcctgaaaggaagctggggacatcctctcaaatcagtgccatgtccgcagtt 445 |||||||||||||||||| || ||||| |||||||||| |||||||||||||||||| || Sbjct: 24113 accttcaatcctgaaagggagttgggggcatcctctcagatcagtgccatgtccgcaatt 24054 Query: 446 gctacatttgattatgtatgatggca 471 ||||||||||||||||||||||||| Sbjct: 24053 tctacatttgattatgtatgatggca 24028 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 483 gatttctgtttggaggcatgacgccatggatcttgagagccatttgtgaacacaatttta 542 ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 23886 gatttctgtttcgaggcatggcgccatggatcttgagagccatttgtgaacactatttta 23827 Query: 543 gaagc 547 ||||| Sbjct: 23826 gaagc 23822 Score = 67.9 bits (34), Expect = 4e-08 Identities = 88/106 (83%) Strand = Plus / Minus Query: 284 ccttgctggctcatggcattgtgatagccacaggtcgatgtgcttgacgatctgcttcct 343 ||||| ||| || ||||||||||||||||||| | |||||| || ||||||||||||| Sbjct: 24765 ccttgttggttcttggcattgtgatagccacaagctgatgtggctggcgatctgcttcct 24706 Query: 344 tactgtgttcaccgcttctggggacgtgcagtttgaagagtcacct 389 |||||| |||| ||| | ||||| | ||| ||||||| ||||||| Sbjct: 24705 cactgtgctcacggctgccggggatgagcaatttgaagggtcacct 24660 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 547 cagcaatacttgtccctccgtaatataagtttgtcatgaacacat 591 ||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 23528 cagcaattcttgtgcctccgtaatacaagtttgtcatgaacacat 23484 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 480 gatgatttctgtttggaggcatgacgccatggatcttgagagccatttgtgaacacaatt 539 ||||||||||| || || ||||| |||||||||||||||||||| |||| || |||||| Sbjct: 14503 gatgatttctgcttagaagcatggcgccatggatcttgagagccgtttgcaaaaacaatt 14444 Query: 540 tt 541 || Sbjct: 14443 tt 14442 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Minus Query: 329 gacgatctgcttccttactgtgttcaccgcttctgg 364 |||||||||||| |||||| ||||||| |||||||| Sbjct: 15004 gacgatctgctttcttactttgttcacagcttctgg 14969
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 123 bits (62), Expect = 7e-25 Identities = 80/86 (93%) Strand = Plus / Minus Query: 386 accttcaatcctgaaaggaagctggggacatcctctcaaatcagtgccatgtccgcagtt 445 |||||||||||||||||| || ||||| |||||||||| |||||||||||||||||| || Sbjct: 19171769 accttcaatcctgaaagggagttgggggcatcctctcagatcagtgccatgtccgcaatt 19171710 Query: 446 gctacatttgattatgtatgatggca 471 ||||||||||||||||||||||||| Sbjct: 19171709 tctacatttgattatgtatgatggca 19171684 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 483 gatttctgtttggaggcatgacgccatggatcttgagagccatttgtgaacacaatttta 542 ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 19171542 gatttctgtttcgaggcatggcgccatggatcttgagagccatttgtgaacactatttta 19171483 Query: 543 gaagc 547 ||||| Sbjct: 19171482 gaagc 19171478 Score = 67.9 bits (34), Expect = 4e-08 Identities = 88/106 (83%) Strand = Plus / Minus Query: 284 ccttgctggctcatggcattgtgatagccacaggtcgatgtgcttgacgatctgcttcct 343 ||||| ||| || ||||||||||||||||||| | |||||| || ||||||||||||| Sbjct: 19172421 ccttgttggttcttggcattgtgatagccacaagctgatgtggctggcgatctgcttcct 19172362 Query: 344 tactgtgttcaccgcttctggggacgtgcagtttgaagagtcacct 389 |||||| |||| ||| | ||||| | ||| ||||||| ||||||| Sbjct: 19172361 cactgtgctcacggctgccggggatgagcaatttgaagggtcacct 19172316 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 547 cagcaatacttgtccctccgtaatataagtttgtcatgaacacat 591 ||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 19171184 cagcaattcttgtgcctccgtaatacaagtttgtcatgaacacat 19171140 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 480 gatgatttctgtttggaggcatgacgccatggatcttgagagccatttgtgaacacaatt 539 ||||||||||| || || ||||| |||||||||||||||||||| |||| || |||||| Sbjct: 19162159 gatgatttctgcttagaagcatggcgccatggatcttgagagccgtttgcaaaaacaatt 19162100 Query: 540 tt 541 || Sbjct: 19162099 tt 19162098 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Minus Query: 329 gacgatctgcttccttactgtgttcaccgcttctgg 364 |||||||||||| |||||| ||||||| |||||||| Sbjct: 19162660 gacgatctgctttcttactttgttcacagcttctgg 19162625 Score = 44.1 bits (22), Expect = 0.52 Identities = 46/54 (85%) Strand = Plus / Plus Query: 332 gatctgcttccttactgtgttcaccgcttctggggacgtgcagtttgaagagtc 385 |||||||||||| |||||| || ||||| ||||||| |||||||||||||| Sbjct: 14381220 gatctgcttcctcactgtgccgacagcttccggggacgaacagtttgaagagtc 14381273
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 123 bits (62), Expect = 7e-25 Identities = 80/86 (93%) Strand = Plus / Minus Query: 386 accttcaatcctgaaaggaagctggggacatcctctcaaatcagtgccatgtccgcagtt 445 |||||||||||||||||| || ||||| |||||||||| |||||||||||||||||| || Sbjct: 19183045 accttcaatcctgaaagggagttgggggcatcctctcagatcagtgccatgtccgcaatt 19182986 Query: 446 gctacatttgattatgtatgatggca 471 ||||||||||||||||||||||||| Sbjct: 19182985 tctacatttgattatgtatgatggca 19182960 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 483 gatttctgtttggaggcatgacgccatggatcttgagagccatttgtgaacacaatttta 542 ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 19182818 gatttctgtttcgaggcatggcgccatggatcttgagagccatttgtgaacactatttta 19182759 Query: 543 gaagc 547 ||||| Sbjct: 19182758 gaagc 19182754 Score = 67.9 bits (34), Expect = 4e-08 Identities = 88/106 (83%) Strand = Plus / Minus Query: 284 ccttgctggctcatggcattgtgatagccacaggtcgatgtgcttgacgatctgcttcct 343 ||||| ||| || ||||||||||||||||||| | |||||| || ||||||||||||| Sbjct: 19183697 ccttgttggttcttggcattgtgatagccacaagctgatgtggctggcgatctgcttcct 19183638 Query: 344 tactgtgttcaccgcttctggggacgtgcagtttgaagagtcacct 389 |||||| |||| ||| | ||||| | ||| ||||||| ||||||| Sbjct: 19183637 cactgtgctcacggctgccggggatgagcaatttgaagggtcacct 19183592 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 547 cagcaatacttgtccctccgtaatataagtttgtcatgaacacat 591 ||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 19182460 cagcaattcttgtgcctccgtaatacaagtttgtcatgaacacat 19182416 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 480 gatgatttctgtttggaggcatgacgccatggatcttgagagccatttgtgaacacaatt 539 ||||||||||| || || ||||| |||||||||||||||||||| |||| || |||||| Sbjct: 19173435 gatgatttctgcttagaagcatggcgccatggatcttgagagccgtttgcaaaaacaatt 19173376 Query: 540 tt 541 || Sbjct: 19173375 tt 19173374 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Minus Query: 329 gacgatctgcttccttactgtgttcaccgcttctgg 364 |||||||||||| |||||| ||||||| |||||||| Sbjct: 19173936 gacgatctgctttcttactttgttcacagcttctgg 19173901 Score = 44.1 bits (22), Expect = 0.52 Identities = 46/54 (85%) Strand = Plus / Plus Query: 332 gatctgcttccttactgtgttcaccgcttctggggacgtgcagtttgaagagtc 385 |||||||||||| |||||| || ||||| ||||||| |||||||||||||| Sbjct: 14389462 gatctgcttcctcactgtgccgacagcttccggggacgaacagtttgaagagtc 14389515
>ref|NM_197308.1| Oryza sativa (japonica cultivar-group) putative serine peptidase (OSJNBa0055O03.7), mRNA Length = 2369 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Minus Query: 480 gatgatttctgtttggaggcatgacgccatggatcttgagagccatttgtgaacacaatt 539 ||||||||||| || || ||||| |||||||||||||||||||| |||| || |||||| Sbjct: 1796 gatgatttctgcttagaagcatggcgccatggatcttgagagccgtttgcaaaaacaatt 1737 Query: 540 ttagaagcagcaatacttgtccctccgtaatataagtttgtcatgaacacat 591 || ||| | ||||| ||||| ||||| || ||||| ||||||||||| |||| Sbjct: 1736 ttcgaacctgcaattcttgtgcctccatagtataaatttgtcatgaatacat 1685 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 329 gacgatctgcttccttactgtgttcaccgcttctggggacgtgcagtttgaagagtcacc 388 |||||||||||| |||||| ||||||| |||||||| || | || || || |||||||| Sbjct: 1947 gacgatctgctttcttactttgttcacagcttctggagatgaacaattagacgagtcacc 1888 Query: 389 ttcaat 394 |||||| Sbjct: 1887 ttcaat 1882
>dbj|AK070496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054G22, full insert sequence Length = 1986 Score = 87.7 bits (44), Expect = 4e-14 Identities = 95/112 (84%) Strand = Plus / Minus Query: 480 gatgatttctgtttggaggcatgacgccatggatcttgagagccatttgtgaacacaatt 539 ||||||||||| || || ||||| |||||||||||||||||||| |||| || |||||| Sbjct: 1401 gatgatttctgcttagaagcatggcgccatggatcttgagagccgtttgcaaaaacaatt 1342 Query: 540 ttagaagcagcaatacttgtccctccgtaatataagtttgtcatgaacacat 591 || ||| | ||||| ||||| ||||| || ||||| ||||||||||| |||| Sbjct: 1341 ttcgaacctgcaattcttgtgcctccatagtataaatttgtcatgaatacat 1290 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 329 gacgatctgcttccttactgtgttcaccgcttctggggacgtgcagtttgaagagtcacc 388 |||||||||||| |||||| ||||||| |||||||| || | || || || |||||||| Sbjct: 1552 gacgatctgctttcttactttgttcacagcttctggagatgaacaattagacgagtcacc 1493 Query: 389 ttcaat 394 |||||| Sbjct: 1492 ttcaat 1487
>gb|BT018927.1| Zea mays clone Contig55.F mRNA sequence Length = 1321 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 480 gatgatttctgtttggaggcatgacgccatggatcttgagagccatttgtgaacacaatt 539 ||||||||||| || || || || |||||||| |||||||| ||||||| || |||||| Sbjct: 630 gatgatttctgcttagaagcgtggcgccatgggtcttgagatccatttgcaaaaacaatt 571 Query: 540 ttagaagcagcaatacttgtccctccgtaatataagtttgtcat 583 |||||| | ||||| | ||| ||||| || |||||||||||||| Sbjct: 570 ttagaacctgcaattcctgtgcctccatagtataagtttgtcat 527 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 292 gctcatggcattgtgatagccacaggtcgatgtgcttgacgatctgcttccttactgtgt 351 |||| ||||||| ||||||||||||||| ||||| | ||| |||| |||||||||| ||| Sbjct: 818 gctcttggcattctgatagccacaggtcaatgtgatcgacaatctccttccttactttgt 759 Query: 352 tca 354 ||| Sbjct: 758 tca 756
>gb|BT024005.1| Zea mays clone EL01N0403G06 mRNA sequence Length = 1602 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 480 gatgatttctgtttggaggcatgacgccatggatcttgagagccatttgtgaacacaatt 539 ||||||||||| || || || || |||||||| |||||||| ||||||| || |||||| Sbjct: 1128 gatgatttctgcttagaagcgtggcgccatgggtcttgagatccatttgcaaaaacaatt 1069 Query: 540 ttagaagcagcaatacttgtccctccgtaatataagtttgtcat 583 |||||| | ||||| | ||| ||||| || |||||||||||||| Sbjct: 1068 ttagaacctgcaattcctgtgcctccatagtataagtttgtcat 1025 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 292 gctcatggcattgtgatagccacaggtcgatgtgcttgacgatctgcttccttactgtgt 351 |||| ||||||| ||||||||||||||| ||||| | ||| |||| |||||||||| ||| Sbjct: 1316 gctcttggcattctgatagccacaggtcaatgtgatcgacaatctccttccttactttgt 1257 Query: 352 tca 354 ||| Sbjct: 1256 tca 1254
>ref|NM_127364.1| Arabidopsis thaliana serine-type peptidase AT2G18080 mRNA, complete cds Length = 1101 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 486 ttctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 ||||||||||| ||||||||||||||||||| || ||||||||||| Sbjct: 884 ttctgtttggaagcatgacgccatggatcttctgacccatttgtgaa 838
>gb|DQ446516.1| Arabidopsis thaliana clone pENTR221-At2g18080 serine carboxypeptidase S28 family protein (At2g18080) mRNA, complete cds Length = 1254 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 486 ttctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 ||||||||||| ||||||||||||||||||| || ||||||||||| Sbjct: 1040 ttctgtttggaagcatgacgccatggatcttctgacccatttgtgaa 994
>gb|AC006201.4| Arabidopsis thaliana chromosome 2 clone T27K22 map c245, complete sequence Length = 88149 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 486 ttctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 ||||||||||| ||||||||||||||||||| || ||||||||||| Sbjct: 16569 ttctgtttggaagcatgacgccatggatcttctgacccatttgtgaa 16615
>ref|NM_001036718.1| Arabidopsis thaliana catalytic/ serine-type peptidase AT4G36195 transcript variant AT4G36195.2 mRNA, complete cds Length = 1663 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1341 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1296
>ref|NM_119787.2| Arabidopsis thaliana catalytic/ serine-type peptidase AT4G36195 transcript variant AT4G36195.1 mRNA, complete cds Length = 1700 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1341 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1296
>gb|AY133877.1| Arabidopsis thaliana clone U09999 unknown protein (At4g36195) mRNA, complete cds Length = 1498 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1252 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1207
>gb|AY034960.1| Arabidopsis thaliana unknown protein (At4g36195) mRNA, complete cds Length = 1713 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1341 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1296
>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85 Length = 198750 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 10642 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 10597 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 489 tgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 7508 tgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 7465
>emb|AL022141.1|ATF23E13 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project) Length = 94695 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 33921 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 33876 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 489 tgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 30787 tgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 30744
>emb|BX827415.1|CNS0A2UW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS51ZH03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1630 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1281 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1236
>emb|BX827322.1|CNS0A2RU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS39ZG03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1592 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1278 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1233
>dbj|AK176922.1| Arabidopsis thaliana mRNA for prolyl carboxypeptidase like protein, complete cds, clone: RAFL25-49-P10 Length = 1657 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1288 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1243
>dbj|AK176387.1| Arabidopsis thaliana mRNA for prolyl carboxypeptidase like protein, complete cds, clone: RAFL24-09-P10 Length = 1665 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1297 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1252
>dbj|AK176292.1| Arabidopsis thaliana mRNA for prolyl carboxypeptidase like protein, complete cds, clone: RAFL23-23-H16 Length = 1654 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1288 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1243
>dbj|AK176216.1| Arabidopsis thaliana mRNA for prolyl carboxypeptidase like protein, complete cds, clone: RAFL23-09-N18 Length = 1627 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1288 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1243
>dbj|AK176095.1| Arabidopsis thaliana mRNA for prolyl carboxypeptidase like protein, complete cds, clone: RAFL22-87-D20 Length = 1656 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1308 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1263
>dbj|AK176051.1| Arabidopsis thaliana mRNA for prolyl carboxypeptidase like protein, complete cds, clone: RAFL22-79-J12 Length = 1656 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1308 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1263
>dbj|AK176014.1| Arabidopsis thaliana mRNA for prolyl carboxypeptidase like protein, complete cds, clone: RAFL22-71-M08 Length = 1656 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1308 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1263
>dbj|AK175200.1| Arabidopsis thaliana mRNA for prolyl carboxypeptidase like protein, partial cds, clone: RAFL21-61-O17 Length = 1544 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1175 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1130
>dbj|AK175158.1| Arabidopsis thaliana mRNA for prolyl carboxypeptidase like protein, complete cds, clone: RAFL21-57-M09 Length = 1618 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 487 tctgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1288 tctgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1243
>ref|NM_119786.2| Arabidopsis thaliana catalytic/ serine-type peptidase AT4G36190 mRNA, complete cds Length = 1861 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 489 tgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1283 tgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1240
>dbj|AK117113.1| Arabidopsis thaliana At4g36190 mRNA for putative prolyl carboxypeptidase, complete cds, clone: RAFL16-65-E09 Length = 1959 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 489 tgtttggaggcatgacgccatggatcttgagagccatttgtgaa 532 |||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 1380 tgtttggatgcatgacgccatggatcctgtgacccatttgtgaa 1337
>gb|AC174351.5| Medicago truncatula clone mth2-7h5, complete sequence Length = 109873 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 489 tgtttggaggcatgacgccatggatcttgagagccatttgt 529 ||||| || ||||||||||||||||| || ||||||||||| Sbjct: 65391 tgtttcgaagcatgacgccatggatcctgtgagccatttgt 65431
>ref|NM_196545.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0053G13.19), mRNA Length = 3840 Score = 44.1 bits (22), Expect = 0.52 Identities = 46/54 (85%) Strand = Plus / Minus Query: 332 gatctgcttccttactgtgttcaccgcttctggggacgtgcagtttgaagagtc 385 |||||||||||| |||||| || ||||| ||||||| |||||||||||||| Sbjct: 3675 gatctgcttcctcactgtgccgacagcttccggggacgaacagtttgaagagtc 3622
>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13, complete sequence Length = 138245 Score = 44.1 bits (22), Expect = 0.52 Identities = 46/54 (85%) Strand = Plus / Plus Query: 332 gatctgcttccttactgtgttcaccgcttctggggacgtgcagtttgaagagtc 385 |||||||||||| |||||| || ||||| ||||||| |||||||||||||| Sbjct: 128495 gatctgcttcctcactgtgccgacagcttccggggacgaacagtttgaagagtc 128548
>gb|AC099501.2| Homo sapiens chromosome 5 clone RP11-20O13, complete sequence Length = 43953 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 512 atcttgagagccatttgtgaa 532 ||||||||||||||||||||| Sbjct: 18163 atcttgagagccatttgtgaa 18183
>emb|AL732504.23| Mouse DNA sequence from clone RP23-177I18 on chromosome 4, complete sequence Length = 192031 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 399 aaaggaagctggggacatcct 419 ||||||||||||||||||||| Sbjct: 132289 aaaggaagctggggacatcct 132269
>emb|BX248236.16| Zebrafish DNA sequence from clone CH211-207B24 in linkage group 3, complete sequence Length = 228572 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 aatacaagcacaaccatgtga 111 ||||||||||||||||||||| Sbjct: 31579 aatacaagcacaaccatgtga 31559
>emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in linkage group 3, complete sequence Length = 174887 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 aatacaagcacaaccatgtga 111 ||||||||||||||||||||| Sbjct: 88591 aatacaagcacaaccatgtga 88611
>emb|CR954188.2| Medicago truncatula chromosome 5 clone mth2-193f16, COMPLETE SEQUENCE Length = 106631 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 489 tgtttggaggcatgacgccatggatcttgagagccatttgtgaacacaatttt 541 ||||| || ||| ||||||| ||||| || |||||||||||||| || ||||| Sbjct: 69034 tgttttgatgcacgacgccaaggatcctgtgagccatttgtgaatactatttt 69086
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 398 gaaaggaagctggggacatcctctc 422 ||||||||||||| ||||||||||| Sbjct: 13440 gaaaggaagctggagacatcctctc 13416
>gb|AF528565.1| Zea mays cultivar BSSS53 chromosome 4 clone BAC 072, complete sequence Length = 106246 Score = 40.1 bits (20), Expect = 8.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 292 gctcatggcattgtgatagccacaggtcgatgtgcttgacgatctgcttccttact 347 |||| ||||||| |||||||||||||| ||||| | ||| || ||||| |||||| Sbjct: 19978 gctcttggcattctgatagccacaggtaaatgtgatcgacaatttgctttcttact 19923
>gb|AC004769.1| Homo sapiens chromosome 5, BAC clone 147d12 (LBNL H95), complete sequence Length = 69572 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gcagtttgaagagtcacctt 390 |||||||||||||||||||| Sbjct: 35774 gcagtttgaagagtcacctt 35755
>gb|DQ437742.1| Pseudomonas aeruginosa strain 6077 ExoU Island A, complete sequence Length = 81751 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gaagctggggacatcctctcaaat 426 ||||||||||||| |||||||||| Sbjct: 53496 gaagctggggacaacctctcaaat 53519
>ref|XM_955716.1| Neurospora crassa OR74A hypothetical protein (NCU08942.1) partial mRNA Length = 1647 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 catgacgccatggatcttga 518 |||||||||||||||||||| Sbjct: 949 catgacgccatggatcttga 968
>gb|AY140653.1| Neurospora crassa alternative oxidase (aod-1) gene, complete cds; nuclear gene for mitochondrial product Length = 5561 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 acttgcaattgttccttcggtcct 220 ||||||||||||||||||| |||| Sbjct: 2749 acttgcaattgttccttcgatcct 2772
>ref|XM_331333.1| Neurospora crassa OR74A hypothetical protein (NCU08942.1) partial mRNA Length = 1647 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 catgacgccatggatcttga 518 |||||||||||||||||||| Sbjct: 949 catgacgccatggatcttga 968
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 agcatgtcgcaaacttgcaa 204 |||||||||||||||||||| Sbjct: 980972 agcatgtcgcaaacttgcaa 980953
>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence Length = 255921 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 atcctctcaaatcagtgcca 434 |||||||||||||||||||| Sbjct: 12975 atcctctcaaatcagtgcca 12956
>gb|AC123066.4| Mus musculus BAC clone RP23-262I13 from chromosome 19, complete sequence Length = 206333 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ctgaaaggaagctggggaca 415 |||||||||||||||||||| Sbjct: 74492 ctgaaaggaagctggggaca 74473
>emb|AL669916.7| Mouse DNA sequence from clone RP23-308N3 on chromosome 11, complete sequence Length = 123478 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 gagagccatttgtgaacaca 536 |||||||||||||||||||| Sbjct: 100989 gagagccatttgtgaacaca 101008
>gb|AC098715.3| Mus musculus BAC clone RP23-2D23 from 7, complete sequence Length = 247835 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 atcctctcaaatcagtgcca 434 |||||||||||||||||||| Sbjct: 180804 atcctctcaaatcagtgcca 180785
>gb|AC005072.2| Homo sapiens BAC clone CTB-181H17 from 7, complete sequence Length = 69367 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 gccatttgtgaacacaattt 540 |||||||||||||||||||| Sbjct: 11878 gccatttgtgaacacaattt 11859
>emb|Z54073.2|HSN13E1 Human DNA sequence from clone LL22NC03-13E1 on chromosome 22 Contains ESTs, STSs and GSSs, complete sequence Length = 38761 Score = 40.1 bits (20), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 21 taaagnccttatgaacatgtaat 43 ||||| ||||||||||||||||| Sbjct: 27809 taaagcccttatgaacatgtaat 27787
>emb|AL355595.10| Human DNA sequence from clone RP11-276G3 on chromosome 13 Contains a novel gene and a novel pseudogene, complete sequence Length = 119343 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 aacaaagttgccatgatggc 77 |||||||||||||||||||| Sbjct: 106337 aacaaagttgccatgatggc 106356
>emb|BX294024.1|NC20H10 Neurospora crassa DNA linkage group V Cosmid contig 20H10 Length = 96283 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 catgacgccatggatcttga 518 |||||||||||||||||||| Sbjct: 62286 catgacgccatggatcttga 62267
>gb|AC147281.4| Pan troglodytes BAC clone RP43-98P12 from chromosome 7, complete sequence Length = 185963 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 gccatttgtgaacacaattt 540 |||||||||||||||||||| Sbjct: 76603 gccatttgtgaacacaattt 76622
>emb|AL935117.16| Zebrafish DNA sequence from clone CH211-197G22 in linkage group 18, complete sequence Length = 213808 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 atttgtgaacacaattttag 543 |||||||||||||||||||| Sbjct: 20028 atttgtgaacacaattttag 20009
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 aaacttgcaattgttccttc 214 |||||||||||||||||||| Sbjct: 3638588 aaacttgcaattgttccttc 3638569
>gb|L46869.1|NEUALTO Neurospora crassa alternative oxidase (ALTOX) gene, complete cds Length = 3374 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 acttgcaattgttccttcggtcct 220 ||||||||||||||||||| |||| Sbjct: 562 acttgcaattgttccttcgatcct 585
>emb|AL844500.1|CNS08CAS Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 85K17 of library RPCI-23 from chromosome 11 of strain C57Bl/6 of Mus musculus (mouse) Length = 234746 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 gagagccatttgtgaacaca 536 |||||||||||||||||||| Sbjct: 193912 gagagccatttgtgaacaca 193931 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,762,911 Number of Sequences: 3902068 Number of extensions: 4762911 Number of successful extensions: 97070 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96821 Number of HSP's gapped (non-prelim): 247 length of query: 593 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 570 effective length of database: 17,143,297,704 effective search space: 9771679691280 effective search space used: 9771679691280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)