ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24i13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY323206.1| Hordeum vulgare SUSIBA2 (susiba2) mRNA, complete cds Length = 2354 Score = 995 bits (502), Expect = 0.0 Identities = 552/568 (97%), Gaps = 11/568 (1%) Strand = Plus / Minus Query: 1 attaggttcgctgtacaacgncatgtagggctgcaatgctacatacagcaagggcctttt 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 2233 attaggttcgctgtacaacga-atgtagggctgcgatgctacatacagcaagggcctttt 2175 Query: 61 ccgcacttaaanagacacatgcgtatttgctgcagt-cccccaggtatagcttatactag 119 ||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct: 2174 ccgcacttaaaaagacacatgcgtatttgctgcagtgcccccacgtatagcttatactag 2115 Query: 120 catacttgcctccggctgaactgacttgtaaccgatacacaattgaga---------atc 170 |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2114 catacttgcctccggctgaactgacttgtaaccgatacacaattgagacaattgagaatc 2055 Query: 171 ttgctgaagagattgtcattacaaagcattgttggtaatatatgattcatggagctatga 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2054 ttgctgaagagattgtcattacaaagcattgttggtaatatatgattcatggagctatga 1995 Query: 231 gcatttgcagacactctcattccctctcatggacccatgaccaagttcccagcactgcta 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1994 gcatttgcagacactctcattccctctcatggacccatgaccaagttcccagcactgcta 1935 Query: 291 tagcataggttagctgaatggtccatcggtgtggctctgaaagtaaacccttcgttacct 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1934 tagcataggttagctgaatggtccatcggtgtggctctgaaagtaaacccttcgttacct 1875 Query: 351 ttctcttctctcgaaccatacatgcggccagcagagtttccttgtaccgctggcgctgcc 410 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1874 ttctcttctctcgaaccatacatgcgggcagcagagtttccttgtaccgctggcgctgcc 1815 Query: 411 attgatgatggatgtctcatgttgccgtacatcgaacccatggtttgcatttgatactgc 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1814 attgatgatggatgtctcatgttgccgtacatcgaacccatggtttgcatttgatactgc 1755 Query: 471 atctggtcaggacctgaagactgcatttggtttgtcgcgtcgctgtggtttgggctgatt 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1754 atctggtcaggacctgaagactgcatttggtttgtcgcgtcgctgtggtttgggctgatt 1695 Query: 531 ccaacaccaagatcaagactgacagtgt 558 |||||||||||||||||||||||||||| Sbjct: 1694 ccaacaccaagatcaagactgacagtgt 1667
>gb|BT009430.1| Triticum aestivum clone wlmk1.pk0035.d9:fis, full insert mRNA sequence Length = 2158 Score = 773 bits (390), Expect = 0.0 Identities = 518/557 (92%), Gaps = 7/557 (1%) Strand = Plus / Minus Query: 1 attaggttcgctgtacaacgncatgtagggctgcaatgctacatacagcaagggcctttt 60 |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||| Sbjct: 2117 attaggttcgctgtacaacga-atgtaggtctgcagcgctacatacagcaggggcctttt 2059 Query: 61 ccgcacttaaanagacacatgcgtatttgctgcagtcccccaggtatagcttatactagc 120 |||| | |||| ||||||||||| |||||||||||||| |||||||||||||||| || Sbjct: 2058 ccgcgcctaaaaagacacatgcgcatttgctgcagtcctccaggtatagcttata---gc 2002 Query: 121 atacttgcctccggctgaactgacttgtaaccgatacacaattgagaatcttgctgaaga 180 |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 2001 ttacttgcctctggctgaactgacttgtaaccgatacacaattaagaatcttgctgaaga 1942 Query: 181 gattgtcattacaaa-gcattgttggtaatatatgattcatggagctatgagcatttgca 239 ||||||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 1941 gattgtcgttacaaaagcattgtttgtaatatatgattcatggagctataagcatttgct 1882 Query: 240 gacactctcat--tccctctcatggacccatgaccaagttcccagcactgctatagcata 297 ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1881 gacactctcatcattcctctcatggacccatgaccaagttcccagcaccgctatagcata 1822 Query: 298 ggttagctgaatggtccatcggtgtggctctgaaagtaaacccttcgttacctttctctt 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1821 ggttagctgaatggtccatcggtgtggctctgaaagtaaacccttcgttacctttctctt 1762 Query: 358 ctctcgaaccatacatgcggccagcagagtttccttgtaccgctggcgctgccattgatg 417 |||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct: 1761 ctctggaaccatacatgcggccagcagagtttccttgtaccgttggcactgccattgatg 1702 Query: 418 atggatgtctcatgttgccgtacatcgaacccatggtttgcatttgatactgcatctggt 477 ||||||||||||||||||||||||||||| |||||| |||||| || ||||||||||| | Sbjct: 1701 atggatgtctcatgttgccgtacatcgaagccatggattgcatctggtactgcatctgat 1642 Query: 478 caggacctgaagactgcatttggtttgtcgcgtcgctgtggtttgggctgattccaacac 537 |||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||| Sbjct: 1641 caggacctgaagactgcatttggtttgtggcatcgctgtggttcgggctgatcccaacac 1582 Query: 538 caagatcaagactgaca 554 |||| |||||||||||| Sbjct: 1581 caaggtcaagactgaca 1565
>ref|XM_478906.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2328 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 444 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 503 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 1719 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 1660 Query: 504 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 552 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 1659 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 1611 Score = 89.7 bits (45), Expect = 9e-15 Identities = 99/117 (84%) Strand = Plus / Minus Query: 254 ctctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtc 313 |||||| ||||||||||| || || || || | || ||||||| |||||| |||||||| Sbjct: 1906 ctctcacggacccatgactaaattgccggcggtactgtagcataagttagccgaatggtc 1847 Query: 314 catcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccata 370 ||||||||||||| |||||||||| ||||| || ||| ||||||||||||||||| Sbjct: 1846 catcggtgtggctttgaaagtaaaaccttcactaggtttttcttctctcgaaccata 1790 Score = 44.1 bits (22), Expect = 0.48 Identities = 58/68 (85%), Gaps = 4/68 (5%) Strand = Plus / Minus Query: 168 atcttgctgaagagattgtcattacaaagcattgttggtaatatatgattcatggagcta 227 ||||| ||||||||| ||||| ||| |||||||| |||||||||||||| | |||||| Sbjct: 1978 atctttctgaagagaatgtcaatacgaagcattg---gtaatatatgattc-tcgagcta 1923 Query: 228 tgagcatt 235 | |||||| Sbjct: 1922 taagcatt 1915
>gb|AY341850.1| Oryza sativa (japonica cultivar-group) WRKY9 mRNA, complete cds Length = 2068 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 444 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 503 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 1747 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 1688 Query: 504 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 552 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 1687 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 1639 Score = 89.7 bits (45), Expect = 9e-15 Identities = 99/117 (84%) Strand = Plus / Minus Query: 254 ctctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtc 313 |||||| ||||||||||| || || || || | || ||||||| |||||| |||||||| Sbjct: 1934 ctctcacggacccatgactaaattgccggcggtactgtagcataagttagccgaatggtc 1875 Query: 314 catcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccata 370 ||||||||||||| |||||||||| ||||| || ||| ||||||||||||||||| Sbjct: 1874 catcggtgtggctttgaaagtaaaaccttcactaggtttttcttctctcgaaccata 1818
>tpg|BK005212.1| TPA: TPA_inf: Oryza sativa WRKY transcription factor 78 (WRKY78) gene, complete cds Length = 5003 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 444 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 503 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 4819 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 4760 Query: 504 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 552 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 4759 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 4711 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 291 tagcataggttagctgaatggtccatcggtgtggctctgaaagtaaacccttcgttacct 350 ||||||| |||||| ||||||||||||||||||||| |||||||||| ||||| || | Sbjct: 4969 tagcataagttagccgaatggtccatcggtgtggctttgaaagtaaaaccttcactaggt 4910 Query: 351 ttctcttctctcgaaccata 370 || ||||||||||||||||| Sbjct: 4909 ttttcttctctcgaaccata 4890
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Plus Query: 444 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 503 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 23601167 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 23601226 Query: 504 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 552 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 23601227 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 23601275 Score = 89.7 bits (45), Expect = 9e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 254 ctctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtc 313 |||||| ||||||||||| || || || || | || ||||||| |||||| |||||||| Sbjct: 23600980 ctctcacggacccatgactaaattgccggcggtactgtagcataagttagccgaatggtc 23601039 Query: 314 catcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccata 370 ||||||||||||| |||||||||| ||||| || ||| ||||||||||||||||| Sbjct: 23601040 catcggtgtggctttgaaagtaaaaccttcactaggtttttcttctctcgaaccata 23601096 Score = 44.1 bits (22), Expect = 0.48 Identities = 58/68 (85%), Gaps = 4/68 (5%) Strand = Plus / Plus Query: 168 atcttgctgaagagattgtcattacaaagcattgttggtaatatatgattcatggagcta 227 ||||| ||||||||| ||||| ||| |||||||| |||||||||||||| | |||||| Sbjct: 23600908 atctttctgaagagaatgtcaatacgaagcattg---gtaatatatgattc-tcgagcta 23600963 Query: 228 tgagcatt 235 | |||||| Sbjct: 23600964 taagcatt 23600971
>dbj|AP003747.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1127_E01 Length = 123787 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Plus Query: 444 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 503 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 53608 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 53667 Query: 504 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 552 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 53668 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 53716 Score = 89.7 bits (45), Expect = 9e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 254 ctctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtc 313 |||||| ||||||||||| || || || || | || ||||||| |||||| |||||||| Sbjct: 53421 ctctcacggacccatgactaaattgccggcggtactgtagcataagttagccgaatggtc 53480 Query: 314 catcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccata 370 ||||||||||||| |||||||||| ||||| || ||| ||||||||||||||||| Sbjct: 53481 catcggtgtggctttgaaagtaaaaccttcactaggtttttcttctctcgaaccata 53537 Score = 44.1 bits (22), Expect = 0.48 Identities = 58/68 (85%), Gaps = 4/68 (5%) Strand = Plus / Plus Query: 168 atcttgctgaagagattgtcattacaaagcattgttggtaatatatgattcatggagcta 227 ||||| ||||||||| ||||| ||| |||||||| |||||||||||||| | |||||| Sbjct: 53349 atctttctgaagagaatgtcaatacgaagcattg---gtaatatatgattc-tcgagcta 53404 Query: 228 tgagcatt 235 | |||||| Sbjct: 53405 taagcatt 53412
>dbj|AK070537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062H03, full insert sequence Length = 2328 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 444 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 503 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 1719 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 1660 Query: 504 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 552 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 1659 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 1611 Score = 89.7 bits (45), Expect = 9e-15 Identities = 99/117 (84%) Strand = Plus / Minus Query: 254 ctctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtc 313 |||||| ||||||||||| || || || || | || ||||||| |||||| |||||||| Sbjct: 1906 ctctcacggacccatgactaaattgccggcggtactgtagcataagttagccgaatggtc 1847 Query: 314 catcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccata 370 ||||||||||||| |||||||||| ||||| || ||| ||||||||||||||||| Sbjct: 1846 catcggtgtggctttgaaagtaaaaccttcactaggtttttcttctctcgaaccata 1790 Score = 44.1 bits (22), Expect = 0.48 Identities = 58/68 (85%), Gaps = 4/68 (5%) Strand = Plus / Minus Query: 168 atcttgctgaagagattgtcattacaaagcattgttggtaatatatgattcatggagcta 227 ||||| ||||||||| ||||| ||| |||||||| |||||||||||||| | |||||| Sbjct: 1978 atctttctgaagagaatgtcaatacgaagcattg---gtaatatatgattc-tcgagcta 1923 Query: 228 tgagcatt 235 | |||||| Sbjct: 1922 taagcatt 1915
>gb|AY105754.1| Zea mays PCO084191 mRNA sequence Length = 1179 Score = 99.6 bits (50), Expect = 9e-18 Identities = 107/126 (84%) Strand = Plus / Minus Query: 256 ctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtcca 315 ||||||||||||| || ||||| |||||||| || || |||| ||||||||| |||||| Sbjct: 780 ctcatggacccatcactaagttaccagcactactgtaacataagttagctgatcggtcca 721 Query: 316 tcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccatacatgc 375 |||| ||| ||||||||||||||||||| ||||| |||||||| ||||| ||||||| Sbjct: 720 aaggtgcagctttgaaagtaaacccttcgtttcctttttcttctctggaaccgtacatgc 661 Query: 376 ggccag 381 ||||| Sbjct: 660 tgccag 655 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 457 gcatttgatactgcatctggtcaggacctgaagactgcatttggtttgtcgcgtcgctgt 516 |||| ||||||||||| | || ||| |||| | |||||| |||||||| || ||||||| Sbjct: 594 gcatctgatactgcataggttctggaactgagggctgcatctggtttgttgcatcgctgt 535 Query: 517 ggtttgggctgattccaacaccaagatcaagactga 552 |||| |||||||| || |||||||| |||||||||| Sbjct: 534 ggttagggctgatacctacaccaaggtcaagactga 499
>ref|XM_751992.1| Ustilago maydis 521 hypothetical protein (UM00938.1) partial mRNA Length = 1416 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 530 tccaacaccaagatcaagactgaca 554 ||||||| ||||||||||||||||| Sbjct: 532 tccaacaacaagatcaagactgaca 556
>emb|AL669986.1|NCB7N14 Neurospora crassa DNA linkage group II BAC clone B7N14 Length = 107947 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 gcgctgccattgatgatggat 423 ||||||||||||||||||||| Sbjct: 64829 gcgctgccattgatgatggat 64849
>ref|XR_003380.1| PREDICTED: Mus musculus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC383692), mRNA Length = 1023 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 attgtcattacaaagcattg 201 |||||||||||||||||||| Sbjct: 874 attgtcattacaaagcattg 855
>emb|BX296553.6| Zebrafish DNA sequence from clone CH211-222G19 in linkage group 8, complete sequence Length = 108215 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 aagactgcatttggtttgtc 506 |||||||||||||||||||| Sbjct: 40903 aagactgcatttggtttgtc 40922
>dbj|AB242299.1| Asterias amurensis PKA-R mRNA for protein kinase A regulatory subunit, complete cds Length = 2300 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tgctacatacagcaagggcc 56 |||||||||||||||||||| Sbjct: 1040 tgctacatacagcaagggcc 1059
>emb|CT485797.2| Medicago truncatula chromosome 5 clone mth4-11a3, COMPLETE SEQUENCE Length = 211224 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 ttcgttacctttctcttctc 360 |||||||||||||||||||| Sbjct: 187732 ttcgttacctttctcttctc 187751
>emb|CT009651.1| Medicago truncatula chromosome 5 clone mte1-70c15, COMPLETE SEQUENCE Length = 110880 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 ttcgttacctttctcttctc 360 |||||||||||||||||||| Sbjct: 107830 ttcgttacctttctcttctc 107811
>emb|AL732317.13| Mouse DNA sequence from clone RP23-139F8 on chromosome 2, complete sequence Length = 222471 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 attgtcattacaaagcattg 201 |||||||||||||||||||| Sbjct: 86209 attgtcattacaaagcattg 86228 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,260,520 Number of Sequences: 3902068 Number of extensions: 4260520 Number of successful extensions: 79338 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79274 Number of HSP's gapped (non-prelim): 53 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
