ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24i12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193728.1| Oryza sativa (japonica cultivar-group), predic... 303 3e-79
2gb|AF450251.1|AF450251 Oryza sativa blast-resistant mRNA, partia... 303 3e-79
3dbj|AK102473.1| Oryza sativa (japonica cultivar-group) cDNA clon... 303 3e-79
4gb|AF514859.1| Oryza sativa (indica cultivar-group) ATP-dependen... 234 2e-58
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
6dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
7gb|AY109053.1| Zea mays PCO106983 mRNA sequence 149 1e-32
8emb|AL445532.8| Human DNA sequence from clone RP11-263K15 on chr... 44 0.47
9gb|AC182700.2| Populus trichocarpa clone Pop1-73H20, complete se... 42 1.9
10emb|AL596327.5| Human DNA sequence from clone RP11-110F24 on chr... 42 1.9
11emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in... 42 1.9
12gb|AC160835.2| Sequence of Xenopus tropicalis BAC clone ISB1-8A8... 42 1.9
13emb|BX005018.8| Zebrafish DNA sequence from clone DKEY-209K18, c... 42 1.9
14ref|XM_638955.1| Dictyostelium discoideum TFIID subunit (DDB0231... 40 7.3
15gb|AC167362.2| Mus musculus BAC clone RP23-74P17 from chromosome... 40 7.3
16gb|AF038615.1| Caenorhabditis elegans cosmid R02D3, complete seq... 40 7.3
17gb|AC134303.2| Homo sapiens chromosome 19 clone LLNLR-265H6, com... 40 7.3
18gb|BC061232.1| Mus musculus oxoglutarate dehydrogenase (lipoamid... 40 7.3
19gb|AC122046.2| Mus musculus BAC clone RP24-449N4 from 7, complet... 40 7.3
20ref|XM_651128.1| Entamoeba histolytica HM-1:IMSS ubiquitin carbo... 40 7.3
21gb|BC013670.1| Mus musculus oxoglutarate dehydrogenase (lipoamid... 40 7.3
22gb|AF045646.3| Caenorhabditis elegans cosmid F56B3, complete seq... 40 7.3
23emb|AL359762.24| Human DNA sequence from clone RP11-118B23 on ch... 40 7.3
24emb|AL607152.21| Mouse DNA sequence from clone RP23-198N14 on ch... 40 7.3
25emb|AL035076.1|SPCC417 S.pombe chromosome III cosmid c417 40 7.3
26gb|AC021956.8| Homo sapiens chromosome 11, clone RP11-447I3, com... 40 7.3
27gb|AC162615.2| Mus musculus chromosome 7, clone RP23-94C20, comp... 40 7.3
28dbj|AK220536.1| Mus musculus mRNA for mKIAA4192 protein 40 7.3
29gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, compl... 40 7.3
30gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cance... 40 7.3
31gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, comple... 40 7.3
32gb|AC092946.7| Homo sapiens 3 BAC RP11-785G3 (Roswell Park Cance... 40 7.3
33gb|AC104442.2| Homo sapiens chromosome 3 clone RP11-905F6, compl... 40 7.3
34gb|AC021006.7| Homo sapiens chromosome 11, clone RP11-124G5, com... 40 7.3
35ref|NM_010956.2| Mus musculus oxoglutarate dehydrogenase (lipoam... 40 7.3
36dbj|AK147289.1| Mus musculus cDNA, RIKEN full-length enriched li... 40 7.3
37dbj|AK150009.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 7.3
38gb|AC013603.17| Homo sapiens, clone RP11-10D7, complete sequence 40 7.3
39dbj|AK169286.1| Mus musculus cDNA, RIKEN full-length enriched li... 40 7.3
40dbj|AK088582.1| Mus musculus 2 days neonate thymus thymic cells ... 40 7.3
41dbj|AK008811.1| Mus musculus adult male stomach cDNA, RIKEN full... 40 7.3
42ref|NM_067479.3| Caenorhabditis elegans R02D3.3 (R02D3.3) mRNA, ... 40 7.3
43dbj|AP000030.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 40 7.3
44gb|AC117070.2| Dictyostelium discoideum chromosome 2 map 2097701... 40 7.3
45gb|AC138058.2| Homo sapiens chromosome 3 clone RP11-298C2, compl... 40 7.3
46gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete se... 40 7.3
47dbj|AK201619.1| Mus musculus cDNA, clone:Y1G0138N03, strand:minu... 40 7.3
48emb|CR456625.13| Zebrafish DNA sequence from clone DKEY-76G24 in... 40 7.3
49emb|AL163051.5|CNS01RIA Human chromosome 14 DNA sequence BAC R-8... 40 7.3
50dbj|AP001711.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.3
51emb|Z11126.1|CEZK643 Caenorhabditis elegans Cosmid ZK643, comple... 40 7.3
52emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on ch... 40 7.3
53emb|AL928539.4| Mouse DNA sequence from clone RP23-152D24 on chr... 40 7.3
54gb|AC091144.12| Homo sapiens chromosome 8, clone RP11-359B20, co... 40 7.3
55dbj|AP000252.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 7.3
56dbj|AP000212.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 7.3 
>ref|NM_193728.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score =  303 bits (153), Expect = 3e-79
 Identities = 286/331 (86%)
 Strand = Plus / Minus

                                                                       
Query: 211 ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 270
           |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 919 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 860

                                                                       
Query: 271 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 330
           | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 859 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 800

                                                                       
Query: 331 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 390
           |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 799 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 740

                                                                       
Query: 391 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtcctcat 450
            ||| |||||||||||||| |||||||||||||||||| |||| ||| | || |||||||
Sbjct: 739 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 680

                                                                       
Query: 451 caatctgctcttcangctttccagngatccttgacattatcttgttgatctttatcttct 510
           |||||||||||||| |||| || | ||| ||||||| ||| |||||||||||||||||||
Sbjct: 679 caatctgctcttcaggcttcccggtgattcttgacagtattttgttgatctttatcttct 620

                                          
Query: 511 catagagcatttctgttatctgcaatcccat 541
           |||| | ||| |||  |||||| ||||||||
Sbjct: 619 catacatcatctctcgtatctgtaatcccat 589
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>gb|AF450251.1|AF450251 Oryza sativa blast-resistant mRNA, partial sequence
          Length = 613

 Score =  303 bits (153), Expect = 3e-79
 Identities = 286/331 (86%)
 Strand = Plus / Minus

                                                                       
Query: 211 ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 270
           |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 369 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 310

                                                                       
Query: 271 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 330
           | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 309 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 250

                                                                       
Query: 331 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 390
           |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 249 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 190

                                                                       
Query: 391 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtcctcat 450
            ||| |||||||||||||| |||||||||||||||||| |||| ||| | || |||||||
Sbjct: 189 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 130

                                                                       
Query: 451 caatctgctcttcangctttccagngatccttgacattatcttgttgatctttatcttct 510
           |||||||||||||| |||| || | ||| ||||||| ||| |||||||||||||||||||
Sbjct: 129 caatctgctcttcaggcttcccggtgattcttgacagtattttgttgatctttatcttct 70

                                          
Query: 511 catagagcatttctgttatctgcaatcccat 541
           |||| | ||| |||  |||||| ||||||||
Sbjct: 69  catacatcatctctcgtatctgtaatcccat 39
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>dbj|AK102473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H09, full
           insert sequence
          Length = 1257

 Score =  303 bits (153), Expect = 3e-79
 Identities = 286/331 (86%)
 Strand = Plus / Minus

                                                                       
Query: 211 ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 270
           |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 987 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 928

                                                                       
Query: 271 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 330
           | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 927 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 868

                                                                       
Query: 331 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 390
           |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 867 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 808

                                                                       
Query: 391 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtcctcat 450
            ||| |||||||||||||| |||||||||||||||||| |||| ||| | || |||||||
Sbjct: 807 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 748

                                                                       
Query: 451 caatctgctcttcangctttccagngatccttgacattatcttgttgatctttatcttct 510
           |||||||||||||| |||| || | ||| ||||||| ||| |||||||||||||||||||
Sbjct: 747 caatctgctcttcaggcttcccggtgattcttgacagtattttgttgatctttatcttct 688

                                          
Query: 511 catagagcatttctgttatctgcaatcccat 541
           |||| | ||| |||  |||||| ||||||||
Sbjct: 687 catacatcatctctcgtatctgtaatcccat 657
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>gb|AF514859.1| Oryza sativa (indica cultivar-group) ATP-dependent Clp protease
            (Pi-HIT-1) gene, complete cds
          Length = 2750

 Score =  234 bits (118), Expect = 2e-58
 Identities = 214/246 (86%)
 Strand = Plus / Minus

                                                                        
Query: 211  ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 270
            |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 2182 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 2123

                                                                        
Query: 271  ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 330
            | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 2122 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 2063

                                                                        
Query: 331  gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 390
            |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 2062 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 2003

                                                                        
Query: 391  ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtcctcat 450
             ||| |||||||||||||| |||||||||||||||||| |||| ||| | || |||||||
Sbjct: 2002 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 1943

                  
Query: 451  caatct 456
            ||||||
Sbjct: 1942 caatct 1937



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                        
Query: 455  ctgctcttcangctttccagngatccttgacattatcttgttgatctttatcttctcata 514
            |||||||||| |||| || | ||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1853 ctgctcttcaggcttcccggtgattcttgacagtattttgttgatctttatcttctcata 1794

                                       
Query: 515  gagcatttctgttatctgcaatcccat 541
             | ||| |||  |||||| ||||||||
Sbjct: 1793 catcatctctcgtatctgtaatcccat 1767
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  234 bits (118), Expect = 2e-58
 Identities = 214/246 (86%)
 Strand = Plus / Minus

                                                                            
Query: 211      ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 270
                |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 17747747 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 17747688

                                                                            
Query: 271      ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 330
                | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 17747687 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 17747628

                                                                            
Query: 331      gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 390
                |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 17747627 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 17747568

                                                                            
Query: 391      ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtcctcat 450
                 ||| |||||||||||||| |||||||||||||||||| |||| ||| | || |||||||
Sbjct: 17747567 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 17747508

                      
Query: 451      caatct 456
                ||||||
Sbjct: 17747507 caatct 17747502



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                            
Query: 455      ctgctcttcangctttccagngatccttgacattatcttgttgatctttatcttctcata 514
                |||||||||| |||| || | ||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 17747418 ctgctcttcaggcttcccggtgattcttgacagtattttgttgatctttatcttctcata 17747359

                                           
Query: 515      gagcatttctgttatctgcaatcccat 541
                 | ||| |||  |||||| ||||||||
Sbjct: 17747358 catcatctctcgtatctgtaatcccat 17747332
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>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0094H06
          Length = 147245

 Score =  234 bits (118), Expect = 2e-58
 Identities = 214/246 (86%)
 Strand = Plus / Minus

                                                                          
Query: 211    ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 270
              |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 129282 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 129223

                                                                          
Query: 271    ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 330
              | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 129222 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 129163

                                                                          
Query: 331    gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 390
              |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 129162 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 129103

                                                                          
Query: 391    ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtcctcat 450
               ||| |||||||||||||| |||||||||||||||||| |||| ||| | || |||||||
Sbjct: 129102 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 129043

                    
Query: 451    caatct 456
              ||||||
Sbjct: 129042 caatct 129037



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                          
Query: 455    ctgctcttcangctttccagngatccttgacattatcttgttgatctttatcttctcata 514
              |||||||||| |||| || | ||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 128953 ctgctcttcaggcttcccggtgattcttgacagtattttgttgatctttatcttctcata 128894

                                         
Query: 515    gagcatttctgttatctgcaatcccat 541
               | ||| |||  |||||| ||||||||
Sbjct: 128893 catcatctctcgtatctgtaatcccat 128867
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>gb|AY109053.1| Zea mays PCO106983 mRNA sequence
          Length = 704

 Score =  149 bits (75), Expect = 1e-32
 Identities = 283/353 (80%)
 Strand = Plus / Plus

                                                                       
Query: 189 gcctccttcagcattccatcagctccacttacgctgccattaccatttcgaatgagcttt 248
           |||||||| ||| |||||||| ||||| || | || || ||||||||  |||| || || 
Sbjct: 176 gcctccttgagctttccatcatctccagttgcacttccgttaccattgtgaattagtttc 235

                                                                       
Query: 249 tcctctgaaggtagatttttcattatttttctagttggtcctgaagcgttccacaagtac 308
           |||||||||||||||| |||||| || || || || || || ||||| ||||||||||||
Sbjct: 236 tcctctgaaggtagatgtttcatgatcttcctggtcggccccgaagccttccacaagtac 295

                                                                       
Query: 309 cacatacgtgattttgggggtggcacagctcccgatacaggagctaccaatccaagtttt 368
           |||| ||| ||||| || || || |||| ||| |  |  ||||||||||| ||  |||| 
Sbjct: 296 cacacacgcgatttgggaggcggaacagatcctgccaagggagctaccaaccctggtttc 355

                                                                       
Query: 369 ccctcgtctataatgctgtcaattattccataatccttggcctcccaaggactcatgaaa 428
           ||||| ||||| ||  |||||| ||| |||||||||||||| ||| ||||||||||||||
Sbjct: 356 ccctcatctatgatattgtcaactatcccataatccttggcttccgaaggactcatgaaa 415

                                                                       
Query: 429 gagtcgaacctcgtgtcctcatcaatctgctcttcangctttccagngatccttgacatt 488
            | || ||| ||||||| |||||||||||||| |||   |||||||  || || ||||||
Sbjct: 416 taatcaaacttcgtgtcttcatcaatctgctcctcagattttccagtaattctcgacatt 475

                                                                
Query: 489 atcttgttgatctttatcttctcatagagcatttctgttatctgcaatcccat 541
           || || |||||||| ||||| || || | ||| ||| ||||||| | ||||||
Sbjct: 476 attttattgatcttaatcttttcgtacatcatctctcttatctgtagtcccat 528
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>emb|AL445532.8| Human DNA sequence from clone RP11-263K15 on chromosome 9 Contains the
             3' end of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB), complete sequence
          Length = 171629

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 266   tttcattatttttctagttggt 287
             ||||||||||||||||||||||
Sbjct: 49835 tttcattatttttctagttggt 49856
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>gb|AC182700.2| Populus trichocarpa clone Pop1-73H20, complete sequence
          Length = 90044

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     gaaaaataatattacaataca 24
             |||||||||||||||||||||
Sbjct: 19341 gaaaaataatattacaataca 19321
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>emb|AL596327.5| Human DNA sequence from clone RP11-110F24 on chromosome 1, complete
             sequence
          Length = 94737

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 264   tttttcattatttttctagtt 284
             |||||||||||||||||||||
Sbjct: 33427 tttttcattatttttctagtt 33447
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>emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in linkage group 8,
              complete sequence
          Length = 168402

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 238    gaatgagcttttcctctgaag 258
              |||||||||||||||||||||
Sbjct: 132435 gaatgagcttttcctctgaag 132415
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>gb|AC160835.2| Sequence of Xenopus tropicalis BAC clone ISB1-8A8 containing the
           3'end of FRZ3, complete sequence
          Length = 42373

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 512 atagagcatttctgttatctg 532
           |||||||||||||||||||||
Sbjct: 371 atagagcatttctgttatctg 391
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>emb|BX005018.8| Zebrafish DNA sequence from clone DKEY-209K18, complete sequence
          Length = 183614

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 238    gaatgagcttttcctctgaag 258
              |||||||||||||||||||||
Sbjct: 111781 gaatgagcttttcctctgaag 111761
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>ref|XM_638955.1| Dictyostelium discoideum TFIID subunit (DDB0231001), partial mRNA
          Length = 2046

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 487  ttatcttgttgatctttatcttct 510
            ||||||||||||||||||| ||||
Sbjct: 1358 ttatcttgttgatctttattttct 1335
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>gb|AC167362.2| Mus musculus BAC clone RP23-74P17 from chromosome 7, complete sequence
          Length = 215537

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      aggaaaaataatattacaat 21
              ||||||||||||||||||||
Sbjct: 176658 aggaaaaataatattacaat 176639
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>gb|AF038615.1| Caenorhabditis elegans cosmid R02D3, complete sequence
          Length = 32218

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 235 ttcgaatgagcttttcctctgaag 258
           ||||| ||||||||||||||||||
Sbjct: 605 ttcgattgagcttttcctctgaag 628
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>gb|AC134303.2| Homo sapiens chromosome 19 clone LLNLR-265H6, complete sequence
          Length = 42236

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   gtcctcatcaatctgctctt 462
             ||||||||||||||||||||
Sbjct: 16054 gtcctcatcaatctgctctt 16035
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>gb|BC061232.1| Mus musculus oxoglutarate dehydrogenase (lipoamide), mRNA (cDNA
           clone IMAGE:6535602), complete cds
          Length = 1980

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 gtcctgaagcgttccacaagtacc 309
           |||||||||| |||||||||||||
Sbjct: 76  gtcctgaagccttccacaagtacc 53
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>gb|AC122046.2| Mus musculus BAC clone RP24-449N4 from 7, complete sequence
          Length = 150101

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     aggaaaaataatattacaat 21
             ||||||||||||||||||||
Sbjct: 70766 aggaaaaataatattacaat 70785
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>ref|XM_651128.1| Entamoeba histolytica HM-1:IMSS ubiquitin carboxyl-terminal hydrolase
            (16.t00053) partial mRNA
          Length = 5580

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  gtagatttttcattattttt 278
            ||||||||||||||||||||
Sbjct: 1354 gtagatttttcattattttt 1335
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>gb|BC013670.1| Mus musculus oxoglutarate dehydrogenase (lipoamide), mRNA (cDNA
           clone MGC:19042 IMAGE:4188988), complete cds
          Length = 4035

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 gtcctgaagcgttccacaagtacc 309
           |||||||||| |||||||||||||
Sbjct: 54  gtcctgaagccttccacaagtacc 31
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>gb|AF045646.3| Caenorhabditis elegans cosmid F56B3, complete sequence
          Length = 39874

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   agatttttcattatttttct 280
             ||||||||||||||||||||
Sbjct: 36239 agatttttcattatttttct 36258
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>emb|AL359762.24| Human DNA sequence from clone RP11-118B23 on chromosome 1 Contains
            the 3' end of the gene for RNA processing factor 1
            (RPF1), the GNG5 gene for guanine nucleotide binding
            protein (G protein), gamma 5, the SPATA1 gene for
            spermatogenesis associated 1, the CTBS gene for
            chitobiase, di-N-acetyl- and a CpG island, complete
            sequence
          Length = 125565

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 263  atttttcattatttttctag 282
            ||||||||||||||||||||
Sbjct: 6107 atttttcattatttttctag 6126
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>emb|AL607152.21| Mouse DNA sequence from clone RP23-198N14 on chromosome 11, complete
              sequence
          Length = 232408

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 286    gtcctgaagcgttccacaagtacc 309
              |||||||||| |||||||||||||
Sbjct: 104189 gtcctgaagccttccacaagtacc 104166
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>emb|AL035076.1|SPCC417 S.pombe chromosome III cosmid c417
          Length = 40383

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   acatatctcaagttgatgag 188
             ||||||||||||||||||||
Sbjct: 15747 acatatctcaagttgatgag 15728
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>gb|AC021956.8| Homo sapiens chromosome 11, clone RP11-447I3, complete sequence
          Length = 197864

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    tttcattatttttctagttg 285
              ||||||||||||||||||||
Sbjct: 178905 tttcattatttttctagttg 178924
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>gb|AC162615.2| Mus musculus chromosome 7, clone RP23-94C20, complete sequence
          Length = 130735

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 255   gaaggtagatttttcattattttt 278
             ||||||||||||| ||||||||||
Sbjct: 41590 gaaggtagattttgcattattttt 41567
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>dbj|AK220536.1| Mus musculus mRNA for mKIAA4192 protein
          Length = 4089

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 gtcctgaagcgttccacaagtacc 309
           |||||||||| |||||||||||||
Sbjct: 82  gtcctgaagccttccacaagtacc 59
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>gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, complete sequence
          Length = 164668

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    atcctaaccccatggtgatg 154
              ||||||||||||||||||||
Sbjct: 140259 atcctaaccccatggtgatg 140278
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>gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168186

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 516   agcatttctgttatctgcaatccc 539
             ||||||| ||||||||||||||||
Sbjct: 19785 agcatttatgttatctgcaatccc 19762
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>gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, complete sequence
          Length = 199776

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  gtcctcatcaatctgctctt 462
            ||||||||||||||||||||
Sbjct: 1264 gtcctcatcaatctgctctt 1245
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>gb|AC092946.7| Homo sapiens 3 BAC RP11-785G3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115500

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 484   acattatcttgttgatctttatcttctc 511
             ||||| |||||||||||||| |||||||
Sbjct: 10411 acattctcttgttgatctttttcttctc 10438
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>gb|AC104442.2| Homo sapiens chromosome 3 clone RP11-905F6, complete sequence
          Length = 219227

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 247  tttcctctgaaggtagattt 266
            ||||||||||||||||||||
Sbjct: 4734 tttcctctgaaggtagattt 4715
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>gb|AC021006.7| Homo sapiens chromosome 11, clone RP11-124G5, complete sequence
          Length = 183772

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   tttcattatttttctagttg 285
             ||||||||||||||||||||
Sbjct: 87166 tttcattatttttctagttg 87185
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>ref|NM_010956.2| Mus musculus oxoglutarate dehydrogenase (lipoamide) (Ogdh), mRNA
          Length = 6638

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 gtcctgaagcgttccacaagtacc 309
           |||||||||| |||||||||||||
Sbjct: 121 gtcctgaagccttccacaagtacc 98
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>dbj|AK147289.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1007N08 product:oxoglutarate dehydrogenase
           (lipoamide), full insert sequence
          Length = 6638

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 gtcctgaagcgttccacaagtacc 309
           |||||||||| |||||||||||||
Sbjct: 121 gtcctgaagccttccacaagtacc 98
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>dbj|AK150009.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:G530117I02 product:oxoglutarate
           dehydrogenase (lipoamide), full insert sequence
          Length = 4127

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 gtcctgaagcgttccacaagtacc 309
           |||||||||| |||||||||||||
Sbjct: 86  gtcctgaagccttccacaagtacc 63
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>gb|AC013603.17| Homo sapiens, clone RP11-10D7, complete sequence
          Length = 177839

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     ggaaaaataatattacaata 22
             ||||||||||||||||||||
Sbjct: 16833 ggaaaaataatattacaata 16852
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>dbj|AK169286.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:I920176A16 product:oxoglutarate dehydrogenase
           (lipoamide), full insert sequence
          Length = 4155

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 gtcctgaagcgttccacaagtacc 309
           |||||||||| |||||||||||||
Sbjct: 112 gtcctgaagccttccacaagtacc 89
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>dbj|AK088582.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430020N12
           product:oxoglutarate dehydrogenase (lipoamide) (EC
           1.2.4.2) E1 component (fragment) homolog [Mus musculus],
           full insert sequence
          Length = 3554

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 gtcctgaagcgttccacaagtacc 309
           |||||||||| |||||||||||||
Sbjct: 48  gtcctgaagccttccacaagtacc 25
to top
>dbj|AK008811.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
           library, clone:2210403E04 product:unclassifiable, full
           insert sequence
          Length = 779

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 gtcctgaagcgttccacaagtacc 309
           |||||||||| |||||||||||||
Sbjct: 76  gtcctgaagccttccacaagtacc 53
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>ref|NM_067479.3| Caenorhabditis elegans R02D3.3 (R02D3.3) mRNA, complete cds
          Length = 1628

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 235  ttcgaatgagcttttcctctgaag 258
            ||||| ||||||||||||||||||
Sbjct: 1463 ttcgattgagcttttcctctgaag 1440
to top
>dbj|AP000030.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 1/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   atcctaaccccatggtgatg 154
             ||||||||||||||||||||
Sbjct: 84357 atcctaaccccatggtgatg 84376
to top
>gb|AC117070.2| Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4,
             complete sequence
          Length = 136240

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 487   ttatcttgttgatctttatcttct 510
             ||||||||||||||||||| ||||
Sbjct: 37389 ttatcttgttgatctttattttct 37412
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>gb|AC138058.2| Homo sapiens chromosome 3 clone RP11-298C2, complete sequence
          Length = 154123

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   tttcctctgaaggtagattt 266
             ||||||||||||||||||||
Sbjct: 79348 tttcctctgaaggtagattt 79329
to top
>gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete sequence
          Length = 86223

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   tttttcattatttttctagt 283
             ||||||||||||||||||||
Sbjct: 79753 tttttcattatttttctagt 79734
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>dbj|AK201619.1| Mus musculus cDNA, clone:Y1G0138N03, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000064907, based on BLAT search
          Length = 172

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 286 gtcctgaagcgttccacaagtacc 309
           |||||||||| |||||||||||||
Sbjct: 70  gtcctgaagccttccacaagtacc 47
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>emb|CR456625.13| Zebrafish DNA sequence from clone DKEY-76G24 in linkage group 12,
              complete sequence
          Length = 228447

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    tataatgctgtcaattattc 396
              ||||||||||||||||||||
Sbjct: 121266 tataatgctgtcaattattc 121285
to top
>emb|AL163051.5|CNS01RIA Human chromosome 14 DNA sequence BAC R-872J21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188020

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 261   agatttttcattatttttctagtt 284
             ||||||| ||||||||||||||||
Sbjct: 96509 agattttacattatttttctagtt 96532
to top
>dbj|AP001711.1| Homo sapiens genomic DNA, chromosome 21q, section 55/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    atcctaaccccatggtgatg 154
              ||||||||||||||||||||
Sbjct: 231363 atcctaaccccatggtgatg 231382
to top
>emb|Z11126.1|CEZK643 Caenorhabditis elegans Cosmid ZK643, complete sequence
          Length = 39534

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   tttttcattatttttctagt 283
             ||||||||||||||||||||
Sbjct: 15270 tttttcattatttttctagt 15289
to top
>emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on chromosome X, complete
              sequence
          Length = 171593

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    tttcattatttttctagttg 285
              ||||||||||||||||||||
Sbjct: 127922 tttcattatttttctagttg 127903
to top
>emb|AL928539.4| Mouse DNA sequence from clone RP23-152D24 on chromosome X, complete
            sequence
          Length = 165789

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  atcttctcatagagcatttc 523
            ||||||||||||||||||||
Sbjct: 5511 atcttctcatagagcatttc 5530
to top
>gb|AC091144.12| Homo sapiens chromosome 8, clone RP11-359B20, complete sequence
          Length = 185872

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    ggaaaaataatattacaata 22
            ||||||||||||||||||||
Sbjct: 6533 ggaaaaataatattacaata 6514
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>dbj|AP000252.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
            clone:T650, complete sequence
          Length = 67008

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  atcctaaccccatggtgatg 154
            ||||||||||||||||||||
Sbjct: 7200 atcctaaccccatggtgatg 7219
to top
>dbj|AP000212.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             f43D11-119B8, segment 10/12, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   atcctaaccccatggtgatg 154
             ||||||||||||||||||||
Sbjct: 44351 atcctaaccccatggtgatg 44370


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,511,088
Number of Sequences: 3902068
Number of extensions: 5511088
Number of successful extensions: 340348
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 340006
Number of HSP's gapped (non-prelim): 335
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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