ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24i10 |
|---|---|
| Clone Library Name | barley_pub |
>IVD2_SOLTU (Q9FS87) Isovaleryl-CoA dehydrogenase 2, mitochondrial precursor| (EC 1.3.99.10) (IVD 2) (Fragment) Length = 401 Score = 78.2 bits (191), Expect = 6e-15 Identities = 36/44 (81%), Positives = 39/44 (88%) Frame = -2 Query: 154 CLGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFKE 23 CLG Y+NEYPTGR L+ AKL+EIGAGTSEIRRMIIGRELFKE Sbjct: 357 CLGGNGYVNEYPTGRFLRDAKLYEIGAGTSEIRRMIIGRELFKE 400
>IVD_ARATH (Q9SWG0) Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC| 1.3.99.10) (IVD) Length = 409 Score = 75.9 bits (185), Expect = 3e-14 Identities = 35/45 (77%), Positives = 40/45 (88%) Frame = -2 Query: 154 CLGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFKED 20 CLG YINEY TGRLL+ AKL+EIGAGTSEIRR++IGRELFKE+ Sbjct: 365 CLGGNGYINEYATGRLLRDAKLYEIGAGTSEIRRIVIGRELFKEE 409
>IVD1_SOLTU (Q9FS88) Isovaleryl-CoA dehydrogenase 1, mitochondrial precursor| (EC 1.3.99.10) (IVD 1) Length = 412 Score = 73.6 bits (179), Expect = 1e-13 Identities = 33/43 (76%), Positives = 38/43 (88%) Frame = -2 Query: 154 CLGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFK 26 CLG YINEYPTGRLL+ AK++EI AGTSEIRR++IGRELFK Sbjct: 368 CLGGNGYINEYPTGRLLRDAKMYEIAAGTSEIRRLVIGRELFK 410
>IVD_MOUSE (Q9JHI5) Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC| 1.3.99.10) (IVD) Length = 424 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/39 (66%), Positives = 33/39 (84%) Frame = -2 Query: 154 CLGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGR 38 CLG YIN++P GR L+ AKL+EIGAGTSE+RR++IGR Sbjct: 379 CLGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGR 417
>IVD_RAT (P12007) Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC| 1.3.99.10) (IVD) Length = 424 Score = 60.5 bits (145), Expect = 1e-09 Identities = 25/39 (64%), Positives = 32/39 (82%) Frame = -2 Query: 154 CLGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGR 38 CLG YIN++P GR L+ AKL+EIG GTSE+RR++IGR Sbjct: 379 CLGGNGYINDFPMGRFLRDAKLYEIGGGTSEVRRLVIGR 417
>IVD_PONPY (Q5RBD5) Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC| 1.3.99.10) (IVD) Length = 423 Score = 60.5 bits (145), Expect = 1e-09 Identities = 25/39 (64%), Positives = 32/39 (82%) Frame = -2 Query: 154 CLGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGR 38 C G YIN++P GR L+ AKL+EIGAGTSE+RR++IGR Sbjct: 378 CFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGR 416
>IVD_HUMAN (P26440) Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC| 1.3.99.10) (IVD) Length = 423 Score = 60.5 bits (145), Expect = 1e-09 Identities = 25/39 (64%), Positives = 32/39 (82%) Frame = -2 Query: 154 CLGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGR 38 C G YIN++P GR L+ AKL+EIGAGTSE+RR++IGR Sbjct: 378 CFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGR 416
>ACADM_HUMAN (P11310) Medium-chain specific acyl-CoA dehydrogenase,| mitochondrial precursor (EC 1.3.99.3) (MCAD) Length = 421 Score = 41.6 bits (96), Expect = 6e-04 Identities = 17/39 (43%), Positives = 28/39 (71%) Frame = -2 Query: 151 LGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRE 35 LG + EYP +L++ AK+++I GTS+I+R+I+ RE Sbjct: 376 LGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVARE 414
>ACADM_DROME (Q9VSA3) Probable medium-chain specific acyl-CoA dehydrogenase,| mitochondrial precursor (EC 1.3.99.3) (MCAD) Length = 419 Score = 41.2 bits (95), Expect = 8e-04 Identities = 16/41 (39%), Positives = 30/41 (73%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFK 26 G + +EYP +L++ AK+++I GTS+I+R+II R +++ Sbjct: 373 GGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISRNMYE 413
>ACADM_MACFA (Q8HXY8) Medium-chain specific acyl-CoA dehydrogenase,| mitochondrial precursor (EC 1.3.99.3) (MCAD) Length = 421 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/38 (44%), Positives = 27/38 (71%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRE 35 G + EYP +L++ AK+++I GTS+I+R+II RE Sbjct: 377 GGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIIARE 414
>ACDS_CLOAB (P52042) Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)| (SCAD) (Butyryl-CoA dehydrogenase) Length = 379 Score = 40.0 bits (92), Expect = 0.002 Identities = 15/41 (36%), Positives = 28/41 (68%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFK 26 G Y +YP R+++ AK+ EI GTSE+++++I ++F+ Sbjct: 339 GGYGYTKDYPVERMMRDAKITEIYEGTSEVQKLVISGKIFR 379
>ACDB_BACSU (P45857) Acyl-CoA dehydrogenase (EC 1.3.99.-)| Length = 378 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/39 (46%), Positives = 27/39 (69%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGREL 32 G Y+ +YP RLL+ AK+ +I GT+EI+R+II + L Sbjct: 336 GGYGYMKDYPVERLLRDAKVTQIYEGTNEIQRLIISKYL 374
>ACADM_RAT (P08503) Medium-chain specific acyl-CoA dehydrogenase,| mitochondrial precursor (EC 1.3.99.3) (MCAD) Length = 421 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/38 (42%), Positives = 27/38 (71%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRE 35 G + EYP +L++ AK+++I GT++I+R+II RE Sbjct: 377 GGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIARE 414
>ACADM_MOUSE (P45952) Medium-chain specific acyl-CoA dehydrogenase,| mitochondrial precursor (EC 1.3.99.3) (MCAD) Length = 421 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/38 (42%), Positives = 27/38 (71%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRE 35 G + EYP +L++ AK+++I GT++I+R+II RE Sbjct: 377 GGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIARE 414
>ACADM_CAEEL (Q22347) Probable medium-chain specific acyl-CoA dehydrogenase,| mitochondrial precursor (EC 1.3.99.3) (MCAD) Length = 417 Score = 38.9 bits (89), Expect = 0.004 Identities = 16/39 (41%), Positives = 28/39 (71%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGREL 32 G + +EYP +L++ AK+++I GTS+I+R++I R L Sbjct: 367 GGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRIVISRML 405
>ACADM_PIG (P41367) Medium-chain specific acyl-CoA dehydrogenase,| mitochondrial precursor (EC 1.3.99.3) (MCAD) Length = 421 Score = 38.9 bits (89), Expect = 0.004 Identities = 16/38 (42%), Positives = 27/38 (71%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRE 35 G + EYP +L++ AK+++I GT++I+R+II RE Sbjct: 377 GGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIARE 414
>ACDP_MYCLE (P46703) Probable acyl-CoA dehydrogenase fadE25 (EC 1.3.99.-)| Length = 389 Score = 35.4 bits (80), Expect = 0.043 Identities = 13/41 (31%), Positives = 27/41 (65%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFK 26 G Y +++P R ++ AK+ +I GT++I+R+++ R L + Sbjct: 349 GGAGYTSDFPVERFMRDAKITQIYEGTNQIQRVVMSRALLR 389
>ACDP_MYCTU (P63427) Probable acyl-CoA dehydrogenase fadE25 (EC 1.3.99.-)| Length = 389 Score = 35.0 bits (79), Expect = 0.056 Identities = 13/41 (31%), Positives = 26/41 (63%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFK 26 G Y ++P R ++ AK+ +I GT++I+R+++ R L + Sbjct: 349 GGAGYTTDFPVERFMRDAKITQIYEGTNQIQRVVMSRALLR 389
>ACDP_MYCBO (P63428) Probable acyl-CoA dehydrogenase fadE25 (EC 1.3.99.-)| Length = 389 Score = 35.0 bits (79), Expect = 0.056 Identities = 13/41 (31%), Positives = 26/41 (63%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFK 26 G Y ++P R ++ AK+ +I GT++I+R+++ R L + Sbjct: 349 GGAGYTTDFPVERFMRDAKITQIYEGTNQIQRVVMSRALLR 389
>ACDS_MEGEL (Q06319) Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)| (SCAD) (Butyryl-CoA dehydrogenase) (BCAD) Length = 383 Score = 35.0 bits (79), Expect = 0.056 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFK 26 G Y EYP R ++ AK+ +I GT+E++ M+ G L + Sbjct: 343 GGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR 383
>ACAD9_MOUSE (Q8JZN5) Acyl-CoA dehydrogenase family member 9, mitochondrial| precursor (EC 1.3.99.-) (ACAD-9) Length = 625 Score = 33.9 bits (76), Expect = 0.13 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = -2 Query: 151 LGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMII 44 LG Y+ +YP R+L+ A++ I GT+EI R+ I Sbjct: 405 LGGSGYMKDYPYERMLRDARILLIFEGTNEILRLFI 440
>ACAD9_HUMAN (Q9H845) Acyl-CoA dehydrogenase family member 9, mitochondrial| precursor (EC 1.3.99.-) (ACAD-9) Length = 621 Score = 32.0 bits (71), Expect = 0.48 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 151 LGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMII 44 LG Y +YP R+L+ ++ I GT+EI RM I Sbjct: 401 LGGLGYTRDYPYERILRDTRILLIFEGTNEILRMYI 436
>ACADL_PIG (P79274) Long-chain specific acyl-CoA dehydrogenase, mitochondrial| precursor (EC 1.3.99.13) (LCAD) Length = 430 Score = 30.4 bits (67), Expect = 1.4 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGREL 32 G Y+ EYP R A++ I GT+EI + +I RE+ Sbjct: 388 GGWGYMWEYPIARAYVDARVQPIYGGTNEIMKELIAREI 426
>YDIO_ECOLI (P0A9U8) Hypothetical protein ydiO| Length = 383 Score = 29.6 bits (65), Expect = 2.4 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = -2 Query: 151 LGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFKE 23 +G Y +E R + + IG GT EI + GR++ K+ Sbjct: 337 MGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKD 379
>YDIO_ECOL6 (P0A9U9) Hypothetical protein ydiO| Length = 383 Score = 29.6 bits (65), Expect = 2.4 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = -2 Query: 151 LGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFKE 23 +G Y +E R + + IG GT EI + GR++ K+ Sbjct: 337 MGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKD 379
>YDIO_ECO57 (P0A9V0) Hypothetical protein ydiO| Length = 383 Score = 29.6 bits (65), Expect = 2.4 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = -2 Query: 151 LGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFKE 23 +G Y +E R + + IG GT EI + GR++ K+ Sbjct: 337 MGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKD 379
>ACADL_MACFA (Q60HI0) Long-chain specific acyl-CoA dehydrogenase, mitochondrial| precursor (EC 1.3.99.13) (LCAD) Length = 430 Score = 29.3 bits (64), Expect = 3.1 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGREL 32 G Y+ EYP + A++ I GT+EI + +I RE+ Sbjct: 388 GGWGYMWEYPIAKAYVDARVQPIYGGTNEIMKELIAREI 426
>ACADL_HUMAN (P28330) Long-chain specific acyl-CoA dehydrogenase, mitochondrial| precursor (EC 1.3.99.13) (LCAD) Length = 430 Score = 29.3 bits (64), Expect = 3.1 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGREL 32 G Y+ EYP + A++ I GT+EI + +I RE+ Sbjct: 388 GGWGYMWEYPIAKAYVDARVQPIYGGTNEIMKELIAREI 426
>IVD_CAEEL (P34275) Probable isovaleryl-CoA dehydrogenase (EC 1.3.99.10) (IVD)| Length = 408 Score = 28.9 bits (63), Expect = 4.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMII 44 G Y+N+ R + ++F IGAG E+ II Sbjct: 362 GGAGYLNDNGISRAFRDFRIFSIGAGCDEVMMQII 396
>ACADL_RAT (P15650) Long-chain specific acyl-CoA dehydrogenase, mitochondrial| precursor (EC 1.3.99.13) (LCAD) Length = 430 Score = 28.5 bits (62), Expect = 5.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFKE 23 G Y+ EYP + A++ I GT+EI + +I R++ + Sbjct: 388 GGWGYMWEYPIAKAYVDARVQPIYGGTNEIMKELIARQIVSD 429
>ACADL_MOUSE (P51174) Long-chain specific acyl-CoA dehydrogenase, mitochondrial| precursor (EC 1.3.99.13) (LCAD) Length = 430 Score = 28.5 bits (62), Expect = 5.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -2 Query: 148 GXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFKE 23 G Y+ EYP + A++ I GT+EI + +I R++ + Sbjct: 388 GGWGYMWEYPIAKAYVDARVQPIYGGTNEIMKELIARQIVSD 429
>ACDSB_RAT (P70584) Short/branched chain specific acyl-CoA dehydrogenase,| mitochondrial precursor (EC 1.3.99.-) (SBCAD) (2-methyl branched chain acyl-CoA dehydrogenase) (2-MEBCAD) (2-methylbutyryl-coenzyme A dehydrogenase) (2-methylbutyryl-CoA dehydrogena Length = 432 Score = 27.7 bits (60), Expect = 9.0 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = -2 Query: 151 LGXXAYINEYPTGRLLKXAKLFEIGAGTSEIRRMIIGRELFKE 23 +G Y +YP + + AK+ I GTS I+ I + + E Sbjct: 389 MGGVGYTKDYPVEKFFRDAKIGTIYEGTSNIQLNTIAKHIDAE 431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,998,364 Number of Sequences: 219361 Number of extensions: 185559 Number of successful extensions: 427 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 404 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 427 length of database: 80,573,946 effective HSP length: 27 effective length of database: 74,651,199 effective search space used: 1791628776 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
