ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24i10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009337.1| Triticum aestivum clone wlm4.pk0012.g12:fis, full insert mRNA sequence Length = 1412 Score = 206 bits (104), Expect = 1e-50 Identities = 141/155 (90%) Strand = Plus / Minus Query: 1 ttccagaagaataatttcagtcctctttgaacagctcacggccaattatcattcttctga 60 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 285 ttccagaagaataatctcagtcctctttaaacagctcacggccaattatcattcttctga 226 Query: 61 tctcactagtaccagccccaatctcgaacagttttgcatntttnagtagacgcccagttg 120 ||||||||||||| ||||||||||||||||||||||||| | || ||||| ||||||| Sbjct: 225 tctcactagtacccgccccaatctcgaacagttttgcatccctcaggagacggccagttg 166 Query: 121 ggtactcatttatgtatgcnnggncaccaagacac 155 ||||||||||||||||| | | ||||||||||| Sbjct: 165 ggtactcatttatgtatccattgccaccaagacac 131
>gb|BT016848.1| Zea mays clone Contig681 mRNA sequence Length = 855 Score = 159 bits (80), Expect = 3e-36 Identities = 111/122 (90%) Strand = Plus / Plus Query: 15 tttcagtcctctttgaacagctcacggccaattatcattcttctgatctcactagtacca 74 ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct: 163 tttcagtcctctttgaagagctcacggccaattatcattcttcttacctcactagtacca 222 Query: 75 gccccaatctcgaacagttttgcatntttnagtagacgcccagttgggtactcatttatg 134 || |||||||| |||| |||||||| | | || ||||| ||||||||||||||||||||| Sbjct: 223 gcaccaatctcaaacaattttgcatctctcaggagacgaccagttgggtactcatttatg 282 Query: 135 ta 136 || Sbjct: 283 ta 284
>gb|AY107381.1| Zea mays PCO061330 mRNA sequence Length = 1531 Score = 151 bits (76), Expect = 7e-34 Identities = 110/122 (90%) Strand = Plus / Minus Query: 15 tttcagtcctctttgaacagctcacggccaattatcattcttctgatctcactagtacca 74 ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| Sbjct: 1320 tttcagtcctctttgaagagctcacggccaattatcattcttcttacctcactagtaccg 1261 Query: 75 gccccaatctcgaacagttttgcatntttnagtagacgcccagttgggtactcatttatg 134 || |||||||| |||| |||||||| | | || ||||| ||||||||||||||||||||| Sbjct: 1260 gcaccaatctcaaacaattttgcatctctcaggagacgaccagttgggtactcatttatg 1201 Query: 135 ta 136 || Sbjct: 1200 ta 1199
>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0079L11, complete sequence Length = 124104 Score = 143 bits (72), Expect = 2e-31 Identities = 133/155 (85%) Strand = Plus / Plus Query: 1 ttccagaagaataatttcagtcctctttgaacagctcacggccaattatcattcttctga 60 ||||| || |||| ||||| ||||||||||| ||||| |||||||||||||||||||| | Sbjct: 71466 ttccaaaataatagtttcactcctctttgaagagctcgcggccaattatcattcttctta 71525 Query: 61 tctcactagtaccagccccaatctcgaacagttttgcatntttnagtagacgcccagttg 120 ||||||||||||| || |||||||| ||||||||||||| | | || | || ||||||| Sbjct: 71526 tctcactagtaccggctccaatctcaaacagttttgcatctctcagcaatcggccagttg 71585 Query: 121 ggtactcatttatgtatgcnnggncaccaagacac 155 ||||||||||||||||| | | ||||||||||| Sbjct: 71586 ggtactcatttatgtatccgttgccaccaagacac 71620
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 143 bits (72), Expect = 2e-31 Identities = 133/155 (85%) Strand = Plus / Plus Query: 1 ttccagaagaataatttcagtcctctttgaacagctcacggccaattatcattcttctga 60 ||||| || |||| ||||| ||||||||||| ||||| |||||||||||||||||||| | Sbjct: 1409804 ttccaaaataatagtttcactcctctttgaagagctcgcggccaattatcattcttctta 1409863 Query: 61 tctcactagtaccagccccaatctcgaacagttttgcatntttnagtagacgcccagttg 120 ||||||||||||| || |||||||| ||||||||||||| | | || | || ||||||| Sbjct: 1409864 tctcactagtaccggctccaatctcaaacagttttgcatctctcagcaatcggccagttg 1409923 Query: 121 ggtactcatttatgtatgcnnggncaccaagacac 155 ||||||||||||||||| | | ||||||||||| Sbjct: 1409924 ggtactcatttatgtatccgttgccaccaagacac 1409958
>dbj|AK071923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072N03, full insert sequence Length = 1663 Score = 143 bits (72), Expect = 2e-31 Identities = 133/155 (85%) Strand = Plus / Minus Query: 1 ttccagaagaataatttcagtcctctttgaacagctcacggccaattatcattcttctga 60 ||||| || |||| ||||| ||||||||||| ||||| |||||||||||||||||||| | Sbjct: 1509 ttccaaaataatagtttcactcctctttgaagagctcgcggccaattatcattcttctta 1450 Query: 61 tctcactagtaccagccccaatctcgaacagttttgcatntttnagtagacgcccagttg 120 ||||||||||||| || |||||||| ||||||||||||| | | || | || ||||||| Sbjct: 1449 tctcactagtaccggctccaatctcaaacagttttgcatctctcagcaatcggccagttg 1390 Query: 121 ggtactcatttatgtatgcnnggncaccaagacac 155 ||||||||||||||||| | | ||||||||||| Sbjct: 1389 ggtactcatttatgtatccgttgccaccaagacac 1355
>dbj|AK066314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064C04, full insert sequence Length = 1500 Score = 143 bits (72), Expect = 2e-31 Identities = 133/155 (85%) Strand = Plus / Minus Query: 1 ttccagaagaataatttcagtcctctttgaacagctcacggccaattatcattcttctga 60 ||||| || |||| ||||| ||||||||||| ||||| |||||||||||||||||||| | Sbjct: 1346 ttccaaaataatagtttcactcctctttgaagagctcgcggccaattatcattcttctta 1287 Query: 61 tctcactagtaccagccccaatctcgaacagttttgcatntttnagtagacgcccagttg 120 ||||||||||||| || |||||||| ||||||||||||| | | || | || ||||||| Sbjct: 1286 tctcactagtaccggctccaatctcaaacagttttgcatctctcagcaatcggccagttg 1227 Query: 121 ggtactcatttatgtatgcnnggncaccaagacac 155 ||||||||||||||||| | | ||||||||||| Sbjct: 1226 ggtactcatttatgtatccgttgccaccaagacac 1192
>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12, complete sequence Length = 144455 Score = 143 bits (72), Expect = 2e-31 Identities = 133/155 (85%) Strand = Plus / Plus Query: 1 ttccagaagaataatttcagtcctctttgaacagctcacggccaattatcattcttctga 60 ||||| || |||| ||||| ||||||||||| ||||| |||||||||||||||||||| | Sbjct: 3884 ttccaaaataatagtttcactcctctttgaagagctcgcggccaattatcattcttctta 3943 Query: 61 tctcactagtaccagccccaatctcgaacagttttgcatntttnagtagacgcccagttg 120 ||||||||||||| || |||||||| ||||||||||||| | | || | || ||||||| Sbjct: 3944 tctcactagtaccggctccaatctcaaacagttttgcatctctcagcaatcggccagttg 4003 Query: 121 ggtactcatttatgtatgcnnggncaccaagacac 155 ||||||||||||||||| | | ||||||||||| Sbjct: 4004 ggtactcatttatgtatccgttgccaccaagacac 4038
>ref|XM_475553.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1230 Score = 135 bits (68), Expect = 4e-29 Identities = 117/135 (86%) Strand = Plus / Minus Query: 21 tcctctttgaacagctcacggccaattatcattcttctgatctcactagtaccagcccca 80 ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| || ||| Sbjct: 1226 tcctctttgaagagctcgcggccaattatcattcttcttatctcactagtaccggctcca 1167 Query: 81 atctcgaacagttttgcatntttnagtagacgcccagttgggtactcatttatgtatgcn 140 ||||| ||||||||||||| | | || | || |||||||||||||||||||||||| | Sbjct: 1166 atctcaaacagttttgcatctctcagcaatcggccagttgggtactcatttatgtatccg 1107 Query: 141 nggncaccaagacac 155 | ||||||||||| Sbjct: 1106 ttgccaccaagacac 1092
>gb|BT017728.1| Zea mays clone EL01N0447H09.c mRNA sequence Length = 942 Score = 113 bits (57), Expect = 2e-22 Identities = 107/123 (86%), Gaps = 1/123 (0%) Strand = Plus / Minus Query: 15 tttcagtcctctttgaacagctcacggccaattatcattct-tctgatctcactagtacc 73 |||||||||| |||||| ||||||||||||||||||||| | | | ||||| || | ||| Sbjct: 741 tttcagtcctttttgaagagctcacggccaattatcattgtgtgttatctcgcttggacc 682 Query: 74 agccccaatctcgaacagttttgcatntttnagtagacgcccagttgggtactcatttat 133 |||||||||||| |||| |||||||| ||| || ||||| |||| ||||||||||||||| Sbjct: 681 agccccaatctcaaacaattttgcatttttgaggagacgaccagctgggtactcatttat 622 Query: 134 gta 136 ||| Sbjct: 621 gta 619
>emb|AJ278988.1|STU278988 Solanum tuberosum partial mRNA for isovaleryl-CoA dehydrogenase (ivd2 gene) Length = 1415 Score = 60.0 bits (30), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 36 tcacggccaattatcattcttctgatctcactagtaccagccccaatctc 85 |||||||| ||||||||||||||||||||||| || || || |||||||| Sbjct: 1187 tcacggcctattatcattcttctgatctcacttgtgcctgcaccaatctc 1138
>gb|AC152176.5| Medicago truncatula clone mth2-65c4, complete sequence Length = 161536 Score = 56.0 bits (28), Expect = 3e-05 Identities = 71/86 (82%) Strand = Plus / Plus Query: 42 ccaattatcattcttctgatctcactagtaccagccccaatctcgaacagttttgcatnt 101 ||||| |||||||||||||||||||| || || ||||| |||||| | ||||| |||| | Sbjct: 11870 ccaataatcattcttctgatctcacttgttccggccccgatctcgtagagtttcgcatct 11929 Query: 102 ttnagtagacgcccagttgggtactc 127 | || ||||| || ||||| ||||| Sbjct: 11930 ctaaggagacgaccggttggatactc 11955
>emb|AJ010946.1|PSA010946 Pisum sativum abp44/ivdh gene for Isovaleryl-CoA dehydrogenase/auxin binding protein Length = 3572 Score = 50.1 bits (25), Expect = 0.002 Identities = 61/73 (83%) Strand = Plus / Minus Query: 27 ttgaacagctcacggccaattatcattcttctgatctcactagtaccagccccaatctcg 86 ||||| ||||| || || || ||||||||||||||||||||||| || || || |||||| Sbjct: 3334 ttgaagagctcgcgtcctataatcattcttctgatctcactagttccggctccgatctcg 3275 Query: 87 aacagttttgcat 99 | ||||| |||| Sbjct: 3274 taaagtttagcat 3262
>emb|AJ010945.1|PSA010945 Pisum sativum mRNA for Isovaleryl-CoA dehydrogenase/auxin binding protein (abp44/ivdh gene) Length = 1559 Score = 50.1 bits (25), Expect = 0.002 Identities = 61/73 (83%) Strand = Plus / Minus Query: 27 ttgaacagctcacggccaattatcattcttctgatctcactagtaccagccccaatctcg 86 ||||| ||||| || || || ||||||||||||||||||||||| || || || |||||| Sbjct: 1321 ttgaagagctcgcgtcctataatcattcttctgatctcactagttccggctccgatctcg 1262 Query: 87 aacagttttgcat 99 | ||||| |||| Sbjct: 1261 taaagtttagcat 1249
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome Length = 1522076 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 cagaagaataatttcagtcc 23 |||||||||||||||||||| Sbjct: 141411 cagaagaataatttcagtcc 141392
>gb|AC095351.5| Homo sapiens X BAC RP11-359C4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194296 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ttccagaagaataatttcag 20 |||||||||||||||||||| Sbjct: 9613 ttccagaagaataatttcag 9594
>gb|AC114547.12| Mus musculus chromosome 8, clone RP24-68M15, complete sequence Length = 182611 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 aattatcattcttctgatct 63 |||||||||||||||||||| Sbjct: 58706 aattatcattcttctgatct 58725
>emb|CR352252.12| Zebrafish DNA sequence from clone CH211-181P13 in linkage group 22, complete sequence Length = 115241 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tcattcttctgatctcacta 68 |||||||||||||||||||| Sbjct: 36346 tcattcttctgatctcacta 36365
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 aattatcattcttctgatc 62 ||||||||||||||||||| Sbjct: 66972 aattatcattcttctgatc 66954
>ref|XM_572967.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNI00270) partial mRNA Length = 3162 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 aattatcattcttctgatc 62 ||||||||||||||||||| Sbjct: 1762 aattatcattcttctgatc 1780
>gb|AC107736.10| Mus musculus chromosome 7, clone RP23-354B2, complete sequence Length = 272413 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 aattatcattcttctgatc 62 ||||||||||||||||||| Sbjct: 32884 aattatcattcttctgatc 32902 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,073,435 Number of Sequences: 3902068 Number of extensions: 1073435 Number of successful extensions: 63182 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63115 Number of HSP's gapped (non-prelim): 60 length of query: 155 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 133 effective length of database: 17,147,199,772 effective search space: 2280577569676 effective search space used: 2280577569676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
