ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24i04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1METK_TROWT (Q83GE4) S-adenosylmethionine synthetase (EC 2.5.1.6)... 28 4.6
2METK_TROW8 (Q83HT7) S-adenosylmethionine synthetase (EC 2.5.1.6)... 28 4.6
3IL28_MOUSE (Q8CGK6) Interleukin-28 precursor (Interferon lambda)... 28 7.9

>METK_TROWT (Q83GE4) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 395

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
 Frame = -1

Query: 257 RGGEET-DGRGCA---GEISQ-------GVLRKPSLLLSRTSPDAGLEDGICSHQSQL 117
           R G ET  G G     GE+S        G++RK  L +  TS DAG++   CS Q  +
Sbjct: 36  RAGIETIAGNGVVHVFGEVSNPDSVDIPGIIRKTILDIGYTSEDAGIDGNTCSIQESI 93



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>METK_TROW8 (Q83HT7) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 395

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
 Frame = -1

Query: 257 RGGEET-DGRGCA---GEISQ-------GVLRKPSLLLSRTSPDAGLEDGICSHQSQL 117
           R G ET  G G     GE+S        G++RK  L +  TS DAG++   CS Q  +
Sbjct: 36  RAGIETIAGNGVVHVFGEVSNPDSVDIPGIIRKTILDIGYTSEDAGIDGNTCSIQESI 93



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>IL28_MOUSE (Q8CGK6) Interleukin-28 precursor (Interferon lambda) (IFN-lambda)|
          Length = 193

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 198 TEAEPSSKPNEPGRRTRRW--HLQSSVSAENLGSXEE*QFSHAVVLFRLRQSDRK 40
           T+ + +++P  P RR  RW   LQ + S E  G  E+   S+   LF+L   D K
Sbjct: 133 TQLQATAEPKPPSRRLSRWLHRLQEAQSKETPGCLEDSVTSN---LFQLLLRDLK 184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,073,350
Number of Sequences: 219361
Number of extensions: 452206
Number of successful extensions: 1137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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