ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24h21 |
|---|---|
| Clone Library Name | barley_pub |
>KISS1_HUMAN (Q15726) Metastasis-suppressor KiSS-1 precursor (Kisspeptin-1)| [Contains: Metastin (Kisspeptin-54); Kisspeptin-14; Kisspeptin-13; Kisspeptin-10] Length = 145 Score = 30.0 bits (66), Expect = 1.7 Identities = 14/39 (35%), Positives = 15/39 (38%) Frame = +3 Query: 93 PCXXNKPCFPIFLSHEGXXTGXPPRHFGRRATP*HTCPH 209 PC KP LS G PP G R P + PH Sbjct: 52 PCTERKPAATARLSRRGTSLSPPPESSGSRQQPGLSAPH 90
>DLL1_MOUSE (Q61483) Delta-like protein 1 precursor (Drosophila Delta homolog| 1) (Delta1) Length = 722 Score = 25.0 bits (53), Expect(2) = 4.9 Identities = 16/54 (29%), Positives = 20/54 (37%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPSCDRKIGKQGLFXWQGFLFVLFQAPCANVAEC 44 G+ C R P G C+ + G GLF Q + PC N A C Sbjct: 250 GRYCDECIRYPGCLHGTCQQPWQCNCQEGWGGLFCNQDLNYCTHHKPCRNGATC 303 Score = 21.9 bits (45), Expect(2) = 4.9 Identities = 9/22 (40%), Positives = 11/22 (50%) Frame = -2 Query: 70 APCANVAECCIIIVFFFCTTTP 5 +PC N A C + F CT P Sbjct: 334 SPCKNGASCTDLEDSFSCTCPP 355
>RL4_STAES (Q8CRG1) 50S ribosomal protein L4| Length = 207 Score = 28.1 bits (61), Expect = 6.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGTIRAPQWRGGGVVFGPT 93
>RL4_STAEQ (Q5HM00) 50S ribosomal protein L4| Length = 207 Score = 28.1 bits (61), Expect = 6.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGTIRAPQWRGGGVVFGPT 93
>RL4_SPIKU (P61069) 50S ribosomal protein L4| Length = 208 Score = 28.1 bits (61), Expect = 6.5 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPSCDRK 125 G+ QG R P+W+GG V P+ ++K Sbjct: 70 GRARQGSIRAPQWKGGGIVFGPTPEKK 96
>RL4_LACLA (Q9CDW3) 50S ribosomal protein L4| Length = 208 Score = 28.1 bits (61), Expect = 6.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGSTRSPQWRGGGTVFGPN 93
>RL4_STAS1 (Q49ZG7) 50S ribosomal protein L4| Length = 207 Score = 27.7 bits (60), Expect = 8.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGTIRAPQWRGGGIVFGPT 93
>RL4_STAHJ (Q4L8B3) 50S ribosomal protein L4| Length = 207 Score = 27.7 bits (60), Expect = 8.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGTIRAPQWRGGGIVFGPT 93
>RL4_STAAW (P61060) 50S ribosomal protein L4| Length = 207 Score = 27.7 bits (60), Expect = 8.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGTIRAPQWRGGGIVFGPT 93
>RL4_STAAS (Q6G772) 50S ribosomal protein L4| Length = 207 Score = 27.7 bits (60), Expect = 8.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGTIRAPQWRGGGIVFGPT 93
>RL4_STAAR (Q6GEI4) 50S ribosomal protein L4| Length = 207 Score = 27.7 bits (60), Expect = 8.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGTIRAPQWRGGGIVFGPT 93
>RL4_STAAN (P61059) 50S ribosomal protein L4| Length = 207 Score = 27.7 bits (60), Expect = 8.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGTIRAPQWRGGGIVFGPT 93
>RL4_STAAM (P61058) 50S ribosomal protein L4| Length = 207 Score = 27.7 bits (60), Expect = 8.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGTIRAPQWRGGGIVFGPT 93
>RL4_STAAC (Q5HDV9) 50S ribosomal protein L4| Length = 207 Score = 27.7 bits (60), Expect = 8.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGTIRAPQWRGGGIVFGPT 93
>RL4_LACJO (P61064) 50S ribosomal protein L4| Length = 205 Score = 27.7 bits (60), Expect = 8.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGSIRAPQWRGGGTVFGPT 93
>RL4_BACCR (Q81J41) 50S ribosomal protein L4| Length = 207 Score = 27.7 bits (60), Expect = 8.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGSIRSPQWRGGGTVFGPT 93
>RL4_BACAN (Q81VS9) 50S ribosomal protein L4| Length = 207 Score = 27.7 bits (60), Expect = 8.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 205 GQVCQGVARRPKWRGGXPVXXPS 137 G+ QG R P+WRGG V P+ Sbjct: 71 GRARQGSIRSPQWRGGGTVFGPT 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,293,823 Number of Sequences: 219361 Number of extensions: 356566 Number of successful extensions: 823 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 809 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 823 length of database: 80,573,946 effective HSP length: 45 effective length of database: 70,702,701 effective search space used: 1696864824 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
