>MPDZ_RAT (O55164) Multiple PDZ domain protein (Multi PDZ domain protein 1)|
            (Multi-PDZ domain protein 1)
          Length = 2054

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +1

Query: 154  QSNQVSAKQLSSFSIIRSHLHLPEAAD 234
            QS+QVS   LSSFS+ RS +H  E+++
Sbjct: 1803 QSSQVSESSLSSFSLPRSGIHTSESSE 1829

>SNU56_YEAST (Q03782) 56 kDa U1 small nuclear ribonucleoprotein component|
          Length = 492

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 89  YEVNRYSNNINGSNRKSKPCLGRATKFPQNNYPAFLSSEATSTSLRLRMKNMCAGSL 259
           + VN+ SN +N SNR S P      ++ + N P F++ +         +K  C G++
Sbjct: 338 HAVNKPSNVLNSSNRHSGPKTFEDGRYSEGNKPGFMTQD--------EIKQHCIGTI 386

>RPA1_MOUSE (O35134) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
            (RNA polymerase I 194 kDa subunit) (RPA194)
          Length = 1717

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 92   EVNRYSNNINGSNRKSKPC--LGRATKFPQNNYPAFLSSEATSTSLRLRMKNMCAGSLAI 265
            EVN YSN IN      K C  LG   +FP+NN    + S A  +++     +   G + +
Sbjct: 875  EVNHYSNEIN------KACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIEL 928


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,530,778
Number of Sequences: 219361
Number of extensions: 1385991
Number of successful extensions: 3717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3714
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7196276819
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)