ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CABYR_MACFA (Q4R3X7) Calcium-binding tyrosine phosphorylation-re... 32 1.1
2PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presy... 32 1.4
3AT8B3_HUMAN (O60423) Probable phospholipid-transporting ATPase I... 32 1.4
4MARK1_RAT (O08678) Serine/threonine-protein kinase MARK1 (EC 2.7... 30 3.1
5NEUR2_RAT (Q64627) Sialidase-2 (EC 3.2.1.18) (Cytosolic sialidas... 30 5.3
6JAG1A_BRARE (Q90Y57) Jagged-1a precursor (Jagged1a) (Jagged1) 30 5.3
7MARK1_HUMAN (Q9P0L2) Serine/threonine-protein kinase MARK1 (EC 2... 29 6.9
8TYRP2_CHICK (O93505) L-dopachrome tautomerase precursor (EC 5.3.... 29 6.9
9KEL1_YEAST (P38853) Kelch repeat-containing protein 1 29 9.0
10MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosi... 29 9.0
11MAC1_SCHPO (Q10268) Membrane-anchored protein 1 precursor 29 9.0

>CABYR_MACFA (Q4R3X7) Calcium-binding tyrosine phosphorylation-regulated protein|
          Length = 487

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 23/89 (25%), Positives = 33/89 (37%)
 Frame = -3

Query: 457 VMEFYRSHQQTLINTFPEGTDSTDSVESPEKFEEASTEYALPTASPFSDFVDNAKKTMIE 278
           + +  +   Q  +  + EGT     +E  ++ E+ S E  +PT    S   D    T  E
Sbjct: 55  IKDLVKQFHQIKVEKWSEGTTPQKKLECLKEPEKTSVESKVPTQMEKSTDTDEDNVTRTE 114

Query: 277 MVDNITNFFQDLFHNPAEAEAGPGSSSKK 191
             D  T F        AE     G SS K
Sbjct: 115 YSDKTTQFPSVYAEPGAEQTEAVGDSSSK 143



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>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic|
            cytomatrix protein) (Brain-derived HLMN protein)
          Length = 5038

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = -3

Query: 421  INTFPEGTDSTDSVESPEKFEEASTEYALPTA----SPFSDFVDNAKKTMIEMVDNITNF 254
            I + PEG +      SPEK  E    Y LPTA    SP  +     K+   + + +    
Sbjct: 1768 IESDPEGFEI-----SPEKIIEVQKVYKLPTAVSLYSPTDEQSVMQKEGAQKALKSAEEM 1822

Query: 253  FQDLFHNPAEAEAGPGSSSKKHSFAEMAAGGSFM 152
            ++++ H P + +A P ++ +   F +    G  +
Sbjct: 1823 YEEMMHKPHKYKAFPAANERDEVFEKEPLYGGML 1856



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>AT8B3_HUMAN (O60423) Probable phospholipid-transporting ATPase IK (EC 3.6.3.1)|
            (ATPase class I type 8B member 3)
          Length = 1310

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
 Frame = -3

Query: 268  NITNFFQDLFHNPAEAEAGPGSSSKKHSFAEMAAGGSFMALAMAVILVVLFKRA*T---- 101
            ++ NFF  L+ +     AGP S S   SFA + A    +++ M VIL++ +  A      
Sbjct: 1100 SLVNFFMTLWIS--RDTAGPASFSDHQSFAVVVALSCLLSITMEVILIIKYWTALCVATI 1157

Query: 100  ------YTASSNALRAYWALNLSKIT 41
                  Y   +   +++W   +S  T
Sbjct: 1158 LLSLGFYAIMTTTTQSFWLFRVSPTT 1183



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>MARK1_RAT (O08678) Serine/threonine-protein kinase MARK1 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase 1)
          Length = 793

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = -3

Query: 412 FPEGTDSTDSVESPEKFEEASTEYALPTASPFSDFVDNA---KKTMIEMVDNITNFFQDL 242
           FP G+ S  +    +  E  S  Y+ P ASP  D    A   + T   ++  IT+ F  +
Sbjct: 604 FPRGSSSRSTFHGEQLRERRSAAYSGPPASPSHDTAALAHARRGTSTGIISKITSKF--V 661

Query: 241 FHNPAEAEAGPGSSSKKHSFAE 176
             +P+E EA   + + + S  E
Sbjct: 662 RRDPSEGEASGRTDTARGSSGE 683



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>NEUR2_RAT (Q64627) Sialidase-2 (EC 3.2.1.18) (Cytosolic sialidase)|
           (N-acetyl-alpha-neuraminidase 2)
          Length = 379

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 368 EI*RGVHRICTAHCLTFLGLRGQCEEDDDRDG*QHNQLFPRPVPQPGGS*G 216
           E+  G HR+   +  +F+G R Q +  +D    Q NQ+  + V  P G  G
Sbjct: 223 EVGTGAHRVVYLNARSFIGARVQAQSPNDGLDFQDNQVVSKLVEPPHGCHG 273



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>JAG1A_BRARE (Q90Y57) Jagged-1a precursor (Jagged1a) (Jagged1)|
          Length = 1242

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
 Frame = -2

Query: 209 GLIL*EAFVCGDGGWWIFHGSCHGGHPSCSVQEGM-NVYC-----KFKRSSCLLGLKSVE 48
           GL L  + VCG  G    H    GGH SC  Q+G    YC       + S CL G   ++
Sbjct: 591 GLRLISSSVCGPHGRCRSHSHA-GGHFSCDCQDGFTGTYCHENINDCESSPCLSGGTCID 649

Query: 47  NNSCYE 30
             + Y+
Sbjct: 650 KINAYQ 655



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>MARK1_HUMAN (Q9P0L2) Serine/threonine-protein kinase MARK1 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase 1)
          Length = 795

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 412 FPEGTDSTDSVESPEKFEEASTEYALPTASPFSD---FVDNAKKTMIEMVDNITNFFQDL 242
           FP G+ S  +    +  E  S  Y  P ASP  +   F    + T   ++  IT+ F  +
Sbjct: 604 FPRGSSSRSTFHGEQLRERRSVAYNGPPASPSHETGAFAHARRGTSTGIISKITSKF--V 661

Query: 241 FHNPAEAEAGPGSSSKKHSFAE 176
             +P+E EA   + + + +  E
Sbjct: 662 RRDPSEGEASGRTDTSRSTSGE 683



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>TYRP2_CHICK (O93505) L-dopachrome tautomerase precursor (EC 5.3.3.12) (DT)|
           (DCT) (L-dopachrome delta-isomerase) (Tyrosinase-related
           protein 2) (TRP-2) (TRP2)
          Length = 521

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -3

Query: 211 PGSSSKKHSFAEMAA---GGSFMALAMAVILVVLFK 113
           PGS  +  ++A M     GG+ +ALA+ V+L+VLF+
Sbjct: 461 PGSLEESQAWAAMVGSTIGGALIALAVLVLLLVLFQ 496



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>KEL1_YEAST (P38853) Kelch repeat-containing protein 1|
          Length = 1164

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
 Frame = -3

Query: 469  KNERVMEFYRSHQQTLINTFPEGTDSTDSVESPEKFEEASTEYALPTASPFSDFVDNAKK 290
            +NER+    + H + +IN     +    S+ S  K   A++ +   ++S  S   +N +K
Sbjct: 907  ENERLKNESKQHNEDIINNVANYSSQLGSLISHWKENRANSSFLESSSSLISVSDENGEK 966

Query: 289  TMIE-----------MVDNITNFFQDLFHNPAEAEAGPGSSSKKHSFAEM 173
            T+ E           +++ +TN   DL     E        S ++   +M
Sbjct: 967  TVGEPYGDQSRHHRVVINKLTNRLDDLLERSQELTISKEKLSSEYHALKM 1016



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>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 136 PPWQEP*KIHQPPSPQTNAS*RMSP--VQPQLPP 231
           PPW  P   H PP+PQ +    + P  V P++PP
Sbjct: 702 PPWAAP--AHVPPAPQASGWAFVEPPAVSPEVPP 733



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>MAC1_SCHPO (Q10268) Membrane-anchored protein 1 precursor|
          Length = 756

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -3

Query: 454 MEFYRSHQQTLINTFPEGTDS----TDSVESPEKFEEASTEYALPTASPFSDFVDNAKKT 287
           +E YR+ Q   I++  EGTDS     ++  S  +      E    TA PF+    NA  T
Sbjct: 343 LEPYRNRQAGSISS--EGTDSRFFDVENQVSVAQTPSVKPEMFPKTARPFAAIHANASST 400

Query: 286 MIEMVDNITN 257
            +   +NIT+
Sbjct: 401 QLRNTENITH 410


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,734,818
Number of Sequences: 219361
Number of extensions: 1592424
Number of successful extensions: 4650
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4647
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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