ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480370.1| Oryza sativa (japonica cultivar-group), mRNA 117 4e-23
2dbj|AK072550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 4e-23
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
4dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
5gb|AY108763.1| Zea mays PCO133003 mRNA sequence 88 3e-14
6ref|XM_426179.1| PREDICTED: Gallus gallus similar to DNA polymer... 44 0.45
7ref|XM_458006.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 1.8
8gb|AC155240.2| Mus musculus BAC clone RP24-477K18 from chromosom... 42 1.8
9emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS... 42 1.8
10emb|CR858183.1| Pongo pygmaeus mRNA; cDNA DKFZp469K138 (from clo... 42 1.8
11gb|AC008951.6| Homo sapiens chromosome 5 clone CTD-2337A12, comp... 42 1.8
12emb|AL049734.11|HSJ154J13 Human DNA sequence from clone RP1-154J... 42 1.8
13emb|CT030241.6| Mouse DNA sequence from clone RP23-377I11 on chr... 42 1.8
14gb|AC005261.2| Homo sapiens chromosome 19, CIT-HSP-444n24, compl... 42 1.8
15gb|AC126937.3| Mus musculus BAC clone RP24-250G8 from chromosome... 40 7.1
16emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chrom... 40 7.1
17gb|AC004885.2| Homo sapiens PAC clone RP4-781A18 from 7, complet... 40 7.1
18emb|AL772384.9| Human DNA sequence from clone RP11-451O13 on chr... 40 7.1
19dbj|AK125939.1| Homo sapiens cDNA FLJ43951 fis, clone TESTI4015398 40 7.1
20dbj|AB232918.1| Oryzias latipes hox gene cluster, complete cds 40 7.1
21dbj|AK170523.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 7.1
22gb|AC005406.2| Homo sapiens clone b128f11, complete sequence 40 7.1
23gb|AC010598.6| Homo sapiens chromosome 5 clone CTC-560O9, comple... 40 7.1
24dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 7.1
25emb|AL928675.7| Zebrafish DNA sequence from clone DKEY-13B16 in ... 40 7.1
26emb|CT009658.7| Mouse DNA sequence from clone CH29-505N5 on chro... 40 7.1 
>ref|XM_480370.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1137

 Score =  117 bits (59), Expect = 4e-23
 Identities = 104/119 (87%)
 Strand = Plus / Minus

                                                                       
Query: 399 gtgccctcagggaaagtattgatcagagtttgctggtgactcctgtaaaattccataacc 458
           |||||||||||||||||||  | |||| ||||||||||  || ||||||||||||| |||
Sbjct: 709 gtgccctcagggaaagtataaaccagactttgctggtgcgtcttgtaaaattccatgacc 650

                                                                      
Query: 459 ctctcgtttttcaacactgcatcccatacatttttatctgatgcaagcgatgcaacaac 517
            |||| |||||||||||||| ||||| ||||||||||| || ||||| |||||||||||
Sbjct: 649 ttctcatttttcaacactgcgtcccagacatttttatcagaggcaagagatgcaacaac 591



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 246 tcttggaaaaagttggttatgttgtcaaccatctctatcatcgtcttcttcgcattgtcc 305
           |||||||||||||||||||| ||||  || || || |||| ||||||| | ||||| |||
Sbjct: 865 tcttggaaaaagttggttatattgttcacaatgtcgatcaccgtcttccttgcattatcc 806

                   
Query: 306 acgaagtc 313
           | ||||||
Sbjct: 805 atgaagtc 798



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 129 aggatgaccgccatggcaagagccatgaaagatccacca 167
           |||||||| || ||||| ||||||||||| |||||||||
Sbjct: 937 aggatgactgctatggccagagccatgaatgatccacca 899
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>dbj|AK072550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131C18, full
           insert sequence
          Length = 1137

 Score =  117 bits (59), Expect = 4e-23
 Identities = 104/119 (87%)
 Strand = Plus / Minus

                                                                       
Query: 399 gtgccctcagggaaagtattgatcagagtttgctggtgactcctgtaaaattccataacc 458
           |||||||||||||||||||  | |||| ||||||||||  || ||||||||||||| |||
Sbjct: 709 gtgccctcagggaaagtataaaccagactttgctggtgcgtcttgtaaaattccatgacc 650

                                                                      
Query: 459 ctctcgtttttcaacactgcatcccatacatttttatctgatgcaagcgatgcaacaac 517
            |||| |||||||||||||| ||||| ||||||||||| || ||||| |||||||||||
Sbjct: 649 ttctcatttttcaacactgcgtcccagacatttttatcagaggcaagagatgcaacaac 591



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 129 aggatgaccgccatggcaagagccatgaaagatccacca 167
           |||||||| || ||||| ||||||||||| |||||||||
Sbjct: 937 aggatgactgctatggccagagccatgaatgatccacca 899



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 tcttggaaaaagttggttat 265
           ||||||||||||||||||||
Sbjct: 865 tcttggaaaaagttggttat 846
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 80/91 (87%)
 Strand = Plus / Minus

                                                                           
Query: 427     tttgctggtgactcctgtaaaattccataaccctctcgtttttcaacactgcatcccata 486
               ||||||||||  || ||||||||||||| ||| |||| |||||||||||||| ||||| |
Sbjct: 4668392 tttgctggtgcgtcttgtaaaattccatgaccttctcatttttcaacactgcgtcccaga 4668333

                                              
Query: 487     catttttatctgatgcaagcgatgcaacaac 517
               |||||||||| || ||||| |||||||||||
Sbjct: 4668332 catttttatcagaggcaagagatgcaacaac 4668302



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                           
Query: 246     tcttggaaaaagttggttatgttgtcaaccatctctatcatcgtcttcttcgcattgtcc 305
               |||||||||||||||||||| ||||  || || || |||| ||||||| | ||||| |||
Sbjct: 4668701 tcttggaaaaagttggttatattgttcacaatgtcgatcaccgtcttccttgcattatcc 4668642

                       
Query: 306     acgaagtc 313
               | ||||||
Sbjct: 4668641 atgaagtc 4668634



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                      
Query: 129     aggatgaccgccatggcaagagccatgaaagatccacca 167
               |||||||| || ||||| ||||||||||| |||||||||
Sbjct: 4668773 aggatgactgctatggccagagccatgaatgatccacca 4668735
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>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0455A11
          Length = 158629

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 80/91 (87%)
 Strand = Plus / Minus

                                                                         
Query: 427   tttgctggtgactcctgtaaaattccataaccctctcgtttttcaacactgcatcccata 486
             ||||||||||  || ||||||||||||| ||| |||| |||||||||||||| ||||| |
Sbjct: 26408 tttgctggtgcgtcttgtaaaattccatgaccttctcatttttcaacactgcgtcccaga 26349

                                            
Query: 487   catttttatctgatgcaagcgatgcaacaac 517
             |||||||||| || ||||| |||||||||||
Sbjct: 26348 catttttatcagaggcaagagatgcaacaac 26318



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 246   tcttggaaaaagttggttatgttgtcaaccatctctatcatcgtcttcttcgcattgtcc 305
             |||||||||||||||||||| ||||  || || || |||| ||||||| | ||||| |||
Sbjct: 26717 tcttggaaaaagttggttatattgttcacaatgtcgatcaccgtcttccttgcattatcc 26658

                     
Query: 306   acgaagtc 313
             | ||||||
Sbjct: 26657 atgaagtc 26650



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 129   aggatgaccgccatggcaagagccatgaaagatccacca 167
             |||||||| || ||||| ||||||||||| |||||||||
Sbjct: 26789 aggatgactgctatggccagagccatgaatgatccacca 26751
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>gb|AY108763.1| Zea mays PCO133003 mRNA sequence
          Length = 966

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                       
Query: 104 tcatgccctcttgaacagaacaactaggatgaccgccatggcaagagccatgaaagatcc 163
           |||||||||||||||||||||||||||||||||||| ||||  ||||||||||| |||||
Sbjct: 790 tcatgccctcttgaacagaacaactaggatgaccgctatggtcagagccatgaaggatcc 731



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 431 ctggtgactcctgtaaaattccataaccctctcgtttttcaacactgcatcccatacatt 490
           ||||||| || | ||||||||||||||| |||| || ||||| ||||||||||| |||||
Sbjct: 451 ctggtgagtcttataaaattccataaccttctcattcttcaatactgcatcccagacatt 392

                          
Query: 491 tttatctgatgcaag 505
           | |||||||||||||
Sbjct: 391 tctatctgatgcaag 377



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 289 tcttcttcgcattgtccacgaa 310
           ||||||||||||||||||||||
Sbjct: 602 tcttcttcgcattgtccacgaa 581



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 38  acgagttattttcgacagatttaa 61
           |||||| |||||||||||||||||
Sbjct: 855 acgagtaattttcgacagatttaa 832
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>ref|XM_426179.1| PREDICTED: Gallus gallus similar to DNA polymerase zeta catalytic
            subunit (hREV3) (LOC428622), mRNA
          Length = 10719

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 105  catgccctcttgaacagaacaa 126
            ||||||||||||||||||||||
Sbjct: 5504 catgccctcttgaacagaacaa 5525
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>ref|XM_458006.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C08261g)
            partial mRNA
          Length = 7989

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 413  agtattgatcagagtttgctg 433
            |||||||||||||||||||||
Sbjct: 6460 agtattgatcagagtttgctg 6440
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>gb|AC155240.2| Mus musculus BAC clone RP24-477K18 from chromosome 12, complete
             sequence
          Length = 146279

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 402   ccctcagggaaagtattgatcagag 426
             |||||||||||||||||||| ||||
Sbjct: 88911 ccctcagggaaagtattgatgagag 88935
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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
              hansenii
          Length = 1592360

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 413    agtattgatcagagtttgctg 433
              |||||||||||||||||||||
Sbjct: 678281 agtattgatcagagtttgctg 678261
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>emb|CR858183.1| Pongo pygmaeus mRNA; cDNA DKFZp469K138 (from clone DKFZp469K138)
          Length = 6900

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 475  ctgcatcccatacatttttat 495
            |||||||||||||||||||||
Sbjct: 6255 ctgcatcccatacatttttat 6275
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>gb|AC008951.6| Homo sapiens chromosome 5 clone CTD-2337A12, complete sequence
          Length = 124151

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 475    ctgcatcccatacatttttat 495
              |||||||||||||||||||||
Sbjct: 103982 ctgcatcccatacatttttat 103962
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>emb|AL049734.11|HSJ154J13 Human DNA sequence from clone RP1-154J13 on chromosome Xq26.1-26.3
             Contains a seven transmembrane helix receptor pseudogene,
             a pseudogene similar to part of seven transmembrane helix
             receptor, a pseudogene similar to part of PYRIN-containing
             Apaf1-like protein 3 (PYPAF3) and the gene for a novel
             protein similar to seven transmembrane helix receptor
             (FLJ31393), complete sequence
          Length = 126766

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 475   ctgcatcccatacatttttat 495
             |||||||||||||||||||||
Sbjct: 35264 ctgcatcccatacatttttat 35244
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>emb|CT030241.6| Mouse DNA sequence from clone RP23-377I11 on chromosome 12, complete
              sequence
          Length = 216916

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 402    ccctcagggaaagtattgatcagag 426
              |||||||||||||||||||| ||||
Sbjct: 212550 ccctcagggaaagtattgatgagag 212574
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>gb|AC005261.2| Homo sapiens chromosome 19, CIT-HSP-444n24, complete sequence
          Length = 190708

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 475    ctgcatcccatacatttttat 495
              |||||||||||||||||||||
Sbjct: 125500 ctgcatcccatacatttttat 125520
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>gb|AC126937.3| Mus musculus BAC clone RP24-250G8 from chromosome 17, complete sequence
          Length = 150579

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   gagaaaggtgaggcagtggg 334
             ||||||||||||||||||||
Sbjct: 89265 gagaaaggtgaggcagtggg 89284
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>emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chromosome 17, complete
              sequence
          Length = 226856

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    gagaaaggtgaggcagtggg 334
              ||||||||||||||||||||
Sbjct: 181291 gagaaaggtgaggcagtggg 181272
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>gb|AC004885.2| Homo sapiens PAC clone RP4-781A18 from 7, complete sequence
          Length = 190842

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   cgaatgcttcttagaggatg 204
             ||||||||||||||||||||
Sbjct: 59109 cgaatgcttcttagaggatg 59128
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>emb|AL772384.9| Human DNA sequence from clone RP11-451O13 on chromosome 1 Contains the
             5' end of a variant of the CD5L gene for CD5 antigen-like
             (scavenger receptor cysteine rich family), a pseudogene
             similar to part of a immunoglobulin receptor-like protein
             and the 5' end of a novel gene, complete sequence
          Length = 68148

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 473   cactgcatcccatacatttt 492
             ||||||||||||||||||||
Sbjct: 44714 cactgcatcccatacatttt 44695
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>dbj|AK125939.1| Homo sapiens cDNA FLJ43951 fis, clone TESTI4015398
          Length = 3744

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 486  acatttttatctgatgcaag 505
            ||||||||||||||||||||
Sbjct: 3246 acatttttatctgatgcaag 3227
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>dbj|AB232918.1| Oryzias latipes hox gene cluster, complete cds
          Length = 268959

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    gccctcttgaacagaacaac 127
              ||||||||||||||||||||
Sbjct: 246140 gccctcttgaacagaacaac 246121
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>dbj|AK170523.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630106K16
            product:zinc finger protein 523, full insert sequence
          Length = 4609

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 315  gagaaaggtgaggcagtggg 334
            ||||||||||||||||||||
Sbjct: 4389 gagaaaggtgaggcagtggg 4408
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>gb|AC005406.2| Homo sapiens clone b128f11, complete sequence
          Length = 226345

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 486    acatttttatctgatgcaag 505
              ||||||||||||||||||||
Sbjct: 220119 acatttttatctgatgcaag 220138
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>gb|AC010598.6| Homo sapiens chromosome 5 clone CTC-560O9, complete sequence
          Length = 174551

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 486   acatttttatctgatgcaag 505
             ||||||||||||||||||||
Sbjct: 59579 acatttttatctgatgcaag 59598
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 211     gtccagcctcagcttccgcc 230
               ||||||||||||||||||||
Sbjct: 2280744 gtccagcctcagcttccgcc 2280763
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>emb|AL928675.7| Zebrafish DNA sequence from clone DKEY-13B16 in linkage group 5,
            complete sequence
          Length = 191304

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 245  gtcttggaaaaagttggttatgttgtca 272
            |||||||| |||||| ||||||||||||
Sbjct: 1628 gtcttggagaaagtttgttatgttgtca 1655
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>emb|CT009658.7| Mouse DNA sequence from clone CH29-505N5 on chromosome 17, complete
             sequence
          Length = 190153

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   gagaaaggtgaggcagtggg 334
             ||||||||||||||||||||
Sbjct: 51475 gagaaaggtgaggcagtggg 51456


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,983,960
Number of Sequences: 3902068
Number of extensions: 3983960
Number of successful extensions: 73587
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73485
Number of HSP's gapped (non-prelim): 102
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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