>NU2M_MUNMN (Q85PS1) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LALQVCTRMLTFIVYHYRTTTTPLCLIYWWNEVP 128
           L + +     TF+++ Y +TTT L L   WN+ P
Sbjct: 205 LTIYIIMTTTTFMLFMYNSTTTTLSLSQTWNKAP 238

>VASS_BPGA (P07394) Assembly protein (Maturation protein) (A protein)|
          Length = 390

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
 Frame = -1

Query: 275 RVTYRLSSRVRLPVLANLGT*RSDGGRHN-KTSNICQDKNIDISWSYR-------TTWHF 120
           +  Y L ++ +LP    L   R+ GG HN K  N+   ++   +WSYR         W+F
Sbjct: 210 KAAYDLLTQTKLPAFMPLRVTRTVGGTHNYKVRNV---ESAGDTWSYRHRLSVNYRIWYF 266

Query: 119 IPPVDQA*WCSS 84
           I     A W SS
Sbjct: 267 ISDPRLA-WASS 277

>NU2M_POTFL (Q2TGY5) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 18  TAALALQVCTRMLTFIVYHYRTTTTPLCLIYWWNEVP 128
           T  L + +   + TF+++ Y ++TT L L + WN+ P
Sbjct: 202 TLNLMMYIVMTLSTFMLFMYSSSTTTLSLSHAWNKFP 238

>NU2M_PARHE (Q85PQ0) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 27  LALQVCTRMLTFIVYHYRTTTTPLCLIYWWNEVP 128
           L + +   + TF+++ + +TTT L L   WN++P
Sbjct: 205 LIIYIMMTLSTFMLFMHNSTTTTLALSQTWNKMP 238

>NU2M_VULVU (Q534D9) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 27  LALQVCTRMLTFIVYHYRTTTTPLCLIYWWNEVP 128
           L+L +   + TF+++    +TT L L + WN++P
Sbjct: 205 LSLYILMTLSTFMLFMLSASTTTLSLSHTWNKIP 238

>NU2M_MYOKI (Q2TQ13) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 18/78 (23%)
 Frame = +3

Query: 27  LALQVCTRMLTFIVYHYRTTTTPLCLIYWWNEVPRCSV------------------*PAY 152
           L L +      F+++ Y +TTT L L   WN+ P  +V                   P +
Sbjct: 205 LLLYILMTTSMFMMFMYNSTTTTLSLSLTWNKTPLMTVLMMTTLLSLGGLPPLTGFMPKW 264

Query: 153 IDVLVLTNVGSLVMPTAI 206
           + +  LT   S+++PT++
Sbjct: 265 MIIHELTKNNSVILPTSM 282

>NU2M_AILME (Q534B1) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 27  LALQVCTRMLTFIVYHYRTTTTPLCLIYWWNEVP 128
           L + +   + TF+++ + ++TT L L Y WN+ P
Sbjct: 205 LTIYIMMTLGTFMLFMHSSSTTTLSLSYTWNKFP 238

>NU2M_GENSE (Q85PP8) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 27  LALQVCTRMLTFIVYHYRTTTTPLCLIYWWNEVP 128
           L + +   + TF+++   +TTT L L   WN++P
Sbjct: 205 LTIYIIMTLTTFMLFMLNSTTTTLSLSQTWNKMP 238

>NU2M_CYNPE (Q85PQ7) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LALQVCTRMLTFIVYHYRTTTTPLCLIYWWNEVP 128
           L + +     TF+++ Y ++TT L L   WN+ P
Sbjct: 205 LTIYIIMTSTTFMLFMYNSSTTTLSLSQTWNKAP 238

>NU2M_AILFU (Q534E0) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 27  LALQVCTRMLTFIVYHYRTTTTPLCLIYWWNEVP 128
           L + +   + TF+++ Y ++ T L L Y WN+ P
Sbjct: 205 LVMYIMMTLGTFMLFMYNSSLTTLSLSYSWNKFP 238


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,584,290
Number of Sequences: 219361
Number of extensions: 1469037
Number of successful extensions: 3454
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3453
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)