Clone Name | rbasd24h02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_464102.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3311 Score = 172 bits (87), Expect = 6e-40 Identities = 206/245 (84%), Gaps = 3/245 (1%) Strand = Plus / Minus Query: 200 cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 259 |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| ||| Sbjct: 3063 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 3004 Query: 260 accggtaggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcacta 319 | |||||||| || || || ||||||||||| ||||| ||||| |||||||||||||| Sbjct: 3003 attggtaggtacccggtagcagctttgtatctcttctgaatctcaaaaatctcttcactg 2944 Query: 320 cttttcaggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatc 379 ||||||| || ||||||||||| |||||||| || || ||||| ||||||||||| ||| Sbjct: 2943 cttttcaagcaatttttcccaatgacacaaaccgagcccccagatcctccaccagttatc 2884 Query: 380 tttgcaccaaatagactcgggcctccatgctgcgaggtagtctttctgtgctggatttct 439 ||||||||||||| ||| || || |||| ||| ||| ||||| |||||||||| |||| Sbjct: 2883 tttgcaccaaataaactaggaccaccatcctgtgag---gtcttcctgtgctggacttct 2827 Query: 440 tgtac 444 ||||| Sbjct: 2826 tgtac 2822
>ref|XM_506716.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1123_E07.2 mRNA Length = 3765 Score = 172 bits (87), Expect = 6e-40 Identities = 206/245 (84%), Gaps = 3/245 (1%) Strand = Plus / Minus Query: 200 cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 259 |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| ||| Sbjct: 3058 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 2999 Query: 260 accggtaggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcacta 319 | |||||||| || || || ||||||||||| ||||| ||||| |||||||||||||| Sbjct: 2998 attggtaggtacccggtagcagctttgtatctcttctgaatctcaaaaatctcttcactg 2939 Query: 320 cttttcaggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatc 379 ||||||| || ||||||||||| |||||||| || || ||||| ||||||||||| ||| Sbjct: 2938 cttttcaagcaatttttcccaatgacacaaaccgagcccccagatcctccaccagttatc 2879 Query: 380 tttgcaccaaatagactcgggcctccatgctgcgaggtagtctttctgtgctggatttct 439 ||||||||||||| ||| || || |||| ||| ||| ||||| |||||||||| |||| Sbjct: 2878 tttgcaccaaataaactaggaccaccatcctgtgag---gtcttcctgtgctggacttct 2822 Query: 440 tgtac 444 ||||| Sbjct: 2821 tgtac 2817
>dbj|AK074020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075P06, full insert sequence Length = 3312 Score = 172 bits (87), Expect = 6e-40 Identities = 206/245 (84%), Gaps = 3/245 (1%) Strand = Plus / Minus Query: 200 cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 259 |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| ||| Sbjct: 3064 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 3005 Query: 260 accggtaggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcacta 319 | |||||||| || || || ||||||||||| ||||| ||||| |||||||||||||| Sbjct: 3004 attggtaggtacccggtagcagctttgtatctcttctgaatctcaaaaatctcttcactg 2945 Query: 320 cttttcaggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatc 379 ||||||| || ||||||||||| |||||||| || || ||||| ||||||||||| ||| Sbjct: 2944 cttttcaagcaatttttcccaatgacacaaaccgagcccccagatcctccaccagttatc 2885 Query: 380 tttgcaccaaatagactcgggcctccatgctgcgaggtagtctttctgtgctggatttct 439 ||||||||||||| ||| || || |||| ||| ||| ||||| |||||||||| |||| Sbjct: 2884 tttgcaccaaataaactaggaccaccatcctgtgag---gtcttcctgtgctggacttct 2828 Query: 440 tgtac 444 ||||| Sbjct: 2827 tgtac 2823
>dbj|AK067279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097O08, full insert sequence Length = 3764 Score = 172 bits (87), Expect = 6e-40 Identities = 206/245 (84%), Gaps = 3/245 (1%) Strand = Plus / Minus Query: 200 cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 259 |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| ||| Sbjct: 3057 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 2998 Query: 260 accggtaggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcacta 319 | |||||||| || || || ||||||||||| ||||| ||||| |||||||||||||| Sbjct: 2997 attggtaggtacccggtagcagctttgtatctcttctgaatctcaaaaatctcttcactg 2938 Query: 320 cttttcaggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatc 379 ||||||| || ||||||||||| |||||||| || || ||||| ||||||||||| ||| Sbjct: 2937 cttttcaagcaatttttcccaatgacacaaaccgagcccccagatcctccaccagttatc 2878 Query: 380 tttgcaccaaatagactcgggcctccatgctgcgaggtagtctttctgtgctggatttct 439 ||||||||||||| ||| || || |||| ||| ||| ||||| |||||||||| |||| Sbjct: 2877 tttgcaccaaataaactaggaccaccatcctgtgag---gtcttcctgtgctggacttct 2821 Query: 440 tgtac 444 ||||| Sbjct: 2820 tgtac 2816
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 107 bits (54), Expect = 3e-20 Identities = 119/140 (85%), Gaps = 3/140 (2%) Strand = Plus / Plus Query: 305 aaaatctcttcactacttttcaggctgtttttcccaataacacaaactgaaccaccagaa 364 |||||||||||||| ||||||| || ||||||||||| |||||||| || || ||||| Sbjct: 2231650 aaaatctcttcactgcttttcaagcaatttttcccaatgacacaaaccgagcccccagat 2231709 Query: 365 cctccaccagtgatctttgcaccaaatagactcgggcctccatgctgcgaggtagtcttt 424 ||||||||||| |||||||||||||||| ||| || || |||| ||| ||| ||||| Sbjct: 2231710 cctccaccagttatctttgcaccaaataaactaggaccaccatcctgtgag---gtcttc 2231766 Query: 425 ctgtgctggatttcttgtac 444 |||||||||| ||||||||| Sbjct: 2231767 ctgtgctggacttcttgtac 2231786 Score = 69.9 bits (35), Expect = 7e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 200 cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 259 |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| ||| Sbjct: 2231393 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 2231452 Query: 260 accggtaggtaacccgtggctgctttgtatcttttctggatct 302 | |||||||| || || || ||||||||||| ||||| |||| Sbjct: 2231453 attggtaggtacccggtagcagctttgtatctcttctgaatct 2231495
>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_E07 Length = 113187 Score = 107 bits (54), Expect = 3e-20 Identities = 119/140 (85%), Gaps = 3/140 (2%) Strand = Plus / Plus Query: 305 aaaatctcttcactacttttcaggctgtttttcccaataacacaaactgaaccaccagaa 364 |||||||||||||| ||||||| || ||||||||||| |||||||| || || ||||| Sbjct: 18599 aaaatctcttcactgcttttcaagcaatttttcccaatgacacaaaccgagcccccagat 18658 Query: 365 cctccaccagtgatctttgcaccaaatagactcgggcctccatgctgcgaggtagtcttt 424 ||||||||||| |||||||||||||||| ||| || || |||| ||| ||| ||||| Sbjct: 18659 cctccaccagttatctttgcaccaaataaactaggaccaccatcctgtgag---gtcttc 18715 Query: 425 ctgtgctggatttcttgtac 444 |||||||||| ||||||||| Sbjct: 18716 ctgtgctggacttcttgtac 18735 Score = 69.9 bits (35), Expect = 7e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 200 cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 259 |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| ||| Sbjct: 18342 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 18401 Query: 260 accggtaggtaacccgtggctgctttgtatcttttctggatct 302 | |||||||| || || || ||||||||||| ||||| |||| Sbjct: 18402 attggtaggtacccggtagcagctttgtatctcttctgaatct 18444
>dbj|AK072069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108L09, full insert sequence Length = 3647 Score = 87.7 bits (44), Expect = 3e-14 Identities = 155/192 (80%) Strand = Plus / Minus Query: 205 tcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagacaaccgg 264 ||||||||||||||| || |||||| |||| || || || || || ||||| | | || Sbjct: 3011 tcggatcttcaggtagccgaatttggcagcgcctggggatgatccatcgaataggattgg 2952 Query: 265 taggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcactactttt 324 |||||| || || ||||| ||||| |||| ||| ||||||| ||||| ||||| ||||| Sbjct: 2951 taggtagccagttgctgccttgtacctttgctgaatctcgatgatctcctcactgctttt 2892 Query: 325 caggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatctttgc 384 |||| ||||||||| || || |||||||| || || |||||||| || || ||||| || Sbjct: 2891 gaggcagtttttccccatgacgcaaactgagcctccggaacctcctccggtaatcttagc 2832 Query: 385 accaaatagact 396 |||||||||||| Sbjct: 2831 accaaatagact 2820
>dbj|AK067999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F06, full insert sequence Length = 3724 Score = 87.7 bits (44), Expect = 3e-14 Identities = 155/192 (80%) Strand = Plus / Minus Query: 205 tcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagacaaccgg 264 ||||||||||||||| || |||||| |||| || || || || || ||||| | | || Sbjct: 3388 tcggatcttcaggtagccgaatttggcagcgcctggggatgatccatcgaataggattgg 3329 Query: 265 taggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcactactttt 324 |||||| || || ||||| ||||| |||| ||| ||||||| ||||| ||||| ||||| Sbjct: 3328 taggtagccagttgctgccttgtacctttgctgaatctcgatgatctcctcactgctttt 3269 Query: 325 caggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatctttgc 384 |||| ||||||||| || || |||||||| || || |||||||| || || ||||| || Sbjct: 3268 gaggcagtttttccccatgacgcaaactgagcctccggaacctcctccggtaatcttagc 3209 Query: 385 accaaatagact 396 |||||||||||| Sbjct: 3208 accaaatagact 3197
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 308 atctcttcactacttttcaggctgtttttcccaataacacaaactgaaccaccagaacct 367 ||||| ||||| ||||| |||| ||||||||| || || |||||||| || || |||||| Sbjct: 29117783 atctcctcactgcttttgaggcagtttttccccatgacgcaaactgagcctccggaacct 29117724 Query: 368 ccaccagtgatctttgcaccaaatagact 396 || || || ||||| |||||||||||||| Sbjct: 29117723 cctccggtaatcttagcaccaaatagact 29117695
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H10 Length = 166570 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 308 atctcttcactacttttcaggctgtttttcccaataacacaaactgaaccaccagaacct 367 ||||| ||||| ||||| |||| ||||||||| || || |||||||| || || |||||| Sbjct: 132770 atctcctcactgcttttgaggcagtttttccccatgacgcaaactgagcctccggaacct 132711 Query: 368 ccaccagtgatctttgcaccaaatagact 396 || || || ||||| |||||||||||||| Sbjct: 132710 cctccggtaatcttagcaccaaatagact 132682
>gb|AC096866.2| Takifugu rubripes clone 247M18, complete sequence Length = 53580 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 101 cttgatctactggtggaatgaag 123 ||||||||||||||||||||||| Sbjct: 38035 cttgatctactggtggaatgaag 38013
>gb|AC127593.4| Mus musculus BAC clone RP23-390G15 from chromosome 10, complete sequence Length = 214856 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 ctccatgctgcgaggtagtc 421 |||||||||||||||||||| Sbjct: 1290 ctccatgctgcgaggtagtc 1271
>gb|AC133078.3| Mus musculus BAC clone RP24-444O21 from chromosome 10, complete sequence Length = 141420 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ctccatgctgcgaggtagtc 421 |||||||||||||||||||| Sbjct: 66507 ctccatgctgcgaggtagtc 66526
>gb|AC123028.4| Mus musculus BAC clone RP24-553H21 from chromosome 10, complete sequence Length = 175143 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 ctccatgctgcgaggtagtc 421 |||||||||||||||||||| Sbjct: 167059 ctccatgctgcgaggtagtc 167040
>emb|AL158211.29| Human DNA sequence from clone RP11-573G6 on chromosome 10 Contains a ribosomal protein L31 (RPL31) pseudogene, the BUP gene for BUP protein, the BMI1 gene for B lymphoma Mo-MLV insertion region (mouse) (MGC12685), the 5' end of the SPAG6 gene for sperm associated antigen 6 (pf16, MGC26276, Repro-SA-1,DKFZp434I153), the 5' end of a novel gene and seven CpG islands, complete sequence Length = 138094 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 cagtgatctttgcaccaaat 391 |||||||||||||||||||| Sbjct: 88034 cagtgatctttgcaccaaat 88015
>emb|CR450818.8| Zebrafish DNA sequence from clone DKEY-172M14 in linkage group 5, complete sequence Length = 150883 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 161 tcttgtcttgacaaatgttggaagtctt 188 ||||||||||||| |||||| ||||||| Sbjct: 62674 tcttgtcttgacacatgttgaaagtctt 62647
>gb|AC090647.6| Genomic sequence for Mus musculus, clone RP23-252I12, complete sequence Length = 139891 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctctgcaagtctgcaccaga 50 |||||||||||||||||||| Sbjct: 83746 ctctgcaagtctgcaccaga 83765
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 acagaactactactacacca 95 |||||||||||||||||||| Sbjct: 1710755 acagaactactactacacca 1710736
>gb|AY914874.1| Sinorhizobium meliloti plasmid pMBA19a CsrA-like protein, YacA-like protein, Rep(pMBA19a) (rep(pMBA19a)), KorA-like protein, and IncC-like protein genes, complete cds Length = 4532 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tgccgaccgccatcggatct 212 |||||||||||||||||||| Sbjct: 2175 tgccgaccgccatcggatct 2156
>gb|AC107301.10| Homo sapiens 3 BAC RP11-544A22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188000 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 aatgttgacatttattgtat 69 |||||||||||||||||||| Sbjct: 15440 aatgttgacatttattgtat 15421
>gb|AC090430.7| Mus Musculus Strain C57BL6/J chromosome 10 BAC, RP23-131G5, complete sequence Length = 185453 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 ctggtggaatgaagtgccac 129 |||||||||||||||||||| Sbjct: 87945 ctggtggaatgaagtgccac 87926
>gb|AC005273.1|AC005273 Homo sapiens chromosome 17, clone hRPK.879_D_6, complete sequence Length = 122250 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 102 ttgatctactggtggaatgaagtgccac 129 ||||||||||||||||||| || ||||| Sbjct: 88836 ttgatctactggtggaatgcagggccac 88809 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,662,684 Number of Sequences: 3902068 Number of extensions: 3662684 Number of successful extensions: 60025 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59934 Number of HSP's gapped (non-prelim): 91 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)