ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd24g15 |
|---|---|
| Clone Library Name | barley_pub |
>PGPLE_DROME (Q9VXN9) Peptidoglycan-recognition protein-LE| Length = 345 Score = 35.4 bits (80), Expect = 0.10 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 6/103 (5%) Frame = -1 Query: 487 YAEVNADAGQTSPTNIVAMGLDEADYEDNASEDGSIVRE------TEYIIGRRNIMNSNS 326 Y E DA Q + I M L S +R+ + +G NI NS + Sbjct: 42 YTEEEEDADQNTSEEISTMTLGTQIATKKHSIISDTIRDLMNSINSIQTLGNVNISNSTN 101 Query: 325 DIIDDTTMHRGQSRIARSSLTKSAQPAISKSKPRDAVLKTPSH 197 I + T G +I LT++ + S PRD KTP+H Sbjct: 102 VHIGNVTNINGNIQIIADGLTQNRRDRRHVSPPRDNAPKTPTH 144
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 35.0 bits (79), Expect = 0.13 Identities = 30/93 (32%), Positives = 40/93 (43%) Frame = -1 Query: 520 NQRRQLADPLSYAEVNADAGQTSPTNIVAMGLDEADYEDNASEDGSIVRETEYIIGRRNI 341 NQR QLA+ + + D G SP + M + NAS S E I + Sbjct: 1057 NQRIQLAEQVEECPSSGDEGVVSPRKRIKMDYHHHHHHSNASGVES-TGEHSSINKPSPL 1115 Query: 340 MNSNSDIIDDTTMHRGQSRIARSSLTKSAQPAI 242 + SN D+I D + S I R S T S P+I Sbjct: 1116 LLSNCDVIHDPLNRK--SEIRRVSETPSGSPSI 1146
>SSK1_YEAST (Q07084) Osomolarity two-component system protein SSK1| Length = 712 Score = 31.6 bits (70), Expect = 1.5 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = -1 Query: 322 IIDDTTMHRGQSRIARSSLTKSAQPAISKSKP---RDAVLKTPSHTRTSSN 179 +ID + +G+SR+ S L KS Q I+ S P + A TP+H+ N Sbjct: 652 LIDFDSWKQGESRMTDSVLVKSPQKPIAPSNPHSFKQATSMTPTHSPVRKN 702
>DPOLZ_MOUSE (Q61493) DNA polymerase zeta catalytic subunit (EC 2.7.7.7)| (Seizure-related protein 4) Length = 3122 Score = 30.8 bits (68), Expect = 2.5 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = -1 Query: 361 IIGRRNIMNSNSDIIDDTTMH---RGQSRIARSSLT-KSAQPAISKSKPRDAVLKTPSHT 194 + +RN N + ++DD + + R SL+ K A PA K KP TP+H Sbjct: 1187 VTNKRNKRNQTTKLVDDGKKKPRAKQKQRANEKSLSRKHAIPADEKMKPHSEAELTPNH- 1245 Query: 193 RTSSNQLAGGSSARATKR 140 S ++L S A+A + Sbjct: 1246 -QSVSELTSSSGAQALSK 1262
>CGS5_YEAST (P30283) S-phase entry cyclin-5| Length = 435 Score = 30.8 bits (68), Expect = 2.5 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Frame = -1 Query: 415 DYEDNASEDGSIVRETEYIIGRRNIMNSNSDIIDDTTMHRGQSRIARSSLTKSAQPAISK 236 D+E + + I E E R + NSN I+ Q++ A S S++ + Sbjct: 6 DHEQSIKRNSMIYNENE-----RQLCNSNLKIL--------QNKRALSKNDSSSKQQVQD 52 Query: 235 SKPRDAVLKTP--SHTRTSSNQLAGGSSARATKR 140 SKPR A+ P ++ + + ++ GS A +R Sbjct: 53 SKPRRALTDVPVNNNPLSQNKRIVAGSKAAKVRR 86
>FFAR1_RAT (Q8K3T4) Free fatty acid receptor 1 (G-protein coupled receptor 40)| Length = 300 Score = 30.0 bits (66), Expect = 4.3 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 120 YVLYFCHLLVALAEEPPANWLDEVLV*LGVFKTASLGFDLDIAG 251 + L CHL +AL E P W+D T+SLG ++ + G Sbjct: 131 WALVLCHLGLALGLEAPRGWVDNT--------TSSLGINIPVNG 166
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 29.6 bits (65), Expect = 5.6 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 9/68 (13%) Frame = -2 Query: 249 QQYPNQNQGMQF*RLQ----VTQGLHPTNWRE-----ALRPEQPKDGRSRARTSCSDVLY 97 QQYP Q QG R Q + Q +P N + + P+Q + S A CS +L+ Sbjct: 1964 QQYPQQQQGWPQQRQQNPGGMQQNANPYNQFQNRQNMMMMPQQQQPHPSNAGDRCSYLLF 2023 Query: 96 FVC*L*LD 73 FV L +D Sbjct: 2024 FVLNLRID 2031
>LYTN_STAAW (Q7A123) Probable cell-wall hydrolase lytN precursor (EC 3.-.-.-)| Length = 383 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/86 (20%), Positives = 37/86 (43%) Frame = -1 Query: 439 VAMGLDEADYEDNASEDGSIVRETEYIIGRRNIMNSNSDIIDDTTMHRGQSRIARSSLTK 260 +A+G+ Y D + R E + ++ +N+N + D + G + + +SL Sbjct: 39 LALGMSNKAYADEIDKSKDFTRGYEQNVFAKSELNANKNTTKDKIKNEGAVKTSDTSLKL 98 Query: 259 SAQPAISKSKPRDAVLKTPSHTRTSS 182 + AIS + +K + + SS Sbjct: 99 DNKSAISNGNEINQDIKISNTPKNSS 124
>LYTN_STAAU (Q9ZNI1) Probable cell-wall hydrolase lytN precursor (EC 3.-.-.-)| Length = 383 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/86 (20%), Positives = 37/86 (43%) Frame = -1 Query: 439 VAMGLDEADYEDNASEDGSIVRETEYIIGRRNIMNSNSDIIDDTTMHRGQSRIARSSLTK 260 +A+G+ Y D + R E + ++ +N+N + D + G + + +SL Sbjct: 39 LALGMSNKAYADEIDKSKDFTRGYEQNVFAKSELNANKNTTKDKIKNEGAVKTSDTSLKL 98 Query: 259 SAQPAISKSKPRDAVLKTPSHTRTSS 182 + AIS + +K + + SS Sbjct: 99 DNKSAISNGNEINQDIKISNTPKNSS 124
>LYTN_STAAS (Q6G9W6) Probable cell-wall hydrolase lytN precursor (EC 3.-.-.-)| Length = 383 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/86 (20%), Positives = 37/86 (43%) Frame = -1 Query: 439 VAMGLDEADYEDNASEDGSIVRETEYIIGRRNIMNSNSDIIDDTTMHRGQSRIARSSLTK 260 +A+G+ Y D + R E + ++ +N+N + D + G + + +SL Sbjct: 39 LALGMSNKAYADEIDKSKDFTRGYEQNVFAKSELNANKNTTKDKIKNEGAVKTSDTSLKL 98 Query: 259 SAQPAISKSKPRDAVLKTPSHTRTSS 182 + AIS + +K + + SS Sbjct: 99 DNKSAISNGNEINQDIKISNTPKNSS 124
>LYTN_STAAN (Q7A5Y8) Probable cell-wall hydrolase lytN precursor (EC 3.-.-.-)| Length = 383 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/86 (20%), Positives = 37/86 (43%) Frame = -1 Query: 439 VAMGLDEADYEDNASEDGSIVRETEYIIGRRNIMNSNSDIIDDTTMHRGQSRIARSSLTK 260 +A+G+ Y D + R E + ++ +N+N + D + G + + +SL Sbjct: 39 LALGMSNKAYADEIDKSKDFTRGYEQNVFAKSELNANKNTTKDKIKNEGAVKTSDTSLKL 98 Query: 259 SAQPAISKSKPRDAVLKTPSHTRTSS 182 + AIS + +K + + SS Sbjct: 99 DNKSAISNGNEINQDIKISNTPKNSS 124
>LYTN_STAAM (Q99UM3) Probable cell-wall hydrolase lytN precursor (EC 3.-.-.-)| Length = 383 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/86 (20%), Positives = 37/86 (43%) Frame = -1 Query: 439 VAMGLDEADYEDNASEDGSIVRETEYIIGRRNIMNSNSDIIDDTTMHRGQSRIARSSLTK 260 +A+G+ Y D + R E + ++ +N+N + D + G + + +SL Sbjct: 39 LALGMSNKAYADEIDKSKDFTRGYEQNVFAKSELNANKNTTKDKIKNEGAVKTSDTSLKL 98 Query: 259 SAQPAISKSKPRDAVLKTPSHTRTSS 182 + AIS + +K + + SS Sbjct: 99 DNKSAISNGNEINQDIKISNTPKNSS 124
>LYTN_STAAC (Q5HGI5) Probable cell-wall hydrolase lytN precursor (EC 3.-.-.-)| Length = 383 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/86 (20%), Positives = 37/86 (43%) Frame = -1 Query: 439 VAMGLDEADYEDNASEDGSIVRETEYIIGRRNIMNSNSDIIDDTTMHRGQSRIARSSLTK 260 +A+G+ Y D + R E + ++ +N+N + D + G + + +SL Sbjct: 39 LALGMSNKAYADEIDKSKDFTRGYEQNVFAKSELNANKNTTKDKIKNEGAVKTSDTSLKL 98 Query: 259 SAQPAISKSKPRDAVLKTPSHTRTSS 182 + AIS + +K + + SS Sbjct: 99 DNKSAISNGNEINQDIKISNTPKNSS 124
>ZDH23_RAT (Q76IC6) Probable palmitoyltransferase ZDHHC23 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 23) (DHHC-23) (NNOS-interacting DHHC domain-containing protein with dendritic mRNA) Length = 429 Score = 29.3 bits (64), Expect = 7.4 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = +1 Query: 175 IGWMKSLCDLESSKLHPLVLIWILLAV---RFL*ERIWLFVIDLYALWYHRL 321 I W++ + S L PLVL+ +LL V FL + L + + ALWY+ L Sbjct: 73 IPWLRGAKKVNISILPPLVLLPVLLRVASWHFLLGVVVLTSLPMLALWYYYL 124
>GAG2_DROME (P20828) Retrovirus-related Gag polyprotein from transposon 297| Length = 414 Score = 29.3 bits (64), Expect = 7.4 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 10/52 (19%) Frame = -2 Query: 279 PDPLSQKAHSQQYPNQNQ--------GMQF*RLQVTQGLHPTNW--REALRP 154 P P+ QK H QQYPN+ Q G + RLQ TN+ + LRP Sbjct: 278 PQPIIQKNHFQQYPNKAQFPQTTHFRGNTYPRLQQPSTYKNTNFPITKRLRP 329
>TGM5_HUMAN (O43548) Protein-glutamine gamma-glutamyltransferase 5 (EC| 2.3.2.13) (Transglutaminase-5) (TGase 5) (Transglutaminase X) (TGase X) (TGX) (TG(X)) Length = 719 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 26 AFILQLPPSISTFLASSSYSQHTKYSTSEQLVR 124 AFI P T+ SYSQ+++Y ++++L+R Sbjct: 562 AFITLSPKEAKTYPCKISYSQYSQYLSTDKLIR 594
>PRH_PETCR (P48786) Pathogenesis-related homeodomain protein (PRHP)| Length = 1088 Score = 28.9 bits (63), Expect = 9.6 Identities = 17/70 (24%), Positives = 31/70 (44%) Frame = -1 Query: 475 NADAGQTSPTNIVAMGLDEADYEDNASEDGSIVRETEYIIGRRNIMNSNSDIIDDTTMHR 296 N+D + P N A + A + + + I E +IG+ + S S ++D R Sbjct: 316 NSDQSELPPEN-AAKNCNHAQFGHQSDDTTKISGFKELVIGQETVAKSPSQLVDAGKRGR 374 Query: 295 GQSRIARSSL 266 G+ R ++ L Sbjct: 375 GRPRKVQTGL 384
>FFAR1_MOUSE (Q76JU9) Free fatty acid receptor 1 (G-protein coupled receptor 40)| Length = 300 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 120 YVLYFCHLLVALAEEPPANWLDEVLV*LGVFKTASLGFDLDIAG 251 + L CHL +AL E +WLD T+SLG ++ + G Sbjct: 131 WALVLCHLGLALGLETSGSWLDN--------STSSLGINIPVNG 166
>Y709_RICPR (Q9ZCL6) Hypothetical protein RP709| Length = 98 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -1 Query: 406 DNASEDGSIVRETEYIIGRRNIMNSNSDIIDDTTMHRG 293 DN+S+D SI+ + + +I NSN D +T G Sbjct: 53 DNSSDDASIINKKAITVTSDDIANSNEDAARNTNKSHG 90
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 28.9 bits (63), Expect = 9.6 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 11/60 (18%) Frame = -3 Query: 287 TNSQILSHKKRTASNIQIKTKGCS---------FEDSKSHKDFIQ--PIGGRLFGQSNQK 141 TN + LS + TA+ + + GC FE S S F+ + FGQ+NQK Sbjct: 1674 TNGEELSFNQTTATTVSVPQDGCRLRKGQTKTLFEFSSSRAGFLPLWDVAATDFGQTNQK 1733 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,552,642 Number of Sequences: 219361 Number of extensions: 1551524 Number of successful extensions: 4069 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3976 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4066 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
