ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24g04 |
|---|---|
| Clone Library Name | barley_pub |
>YYAK_BACSU (P37513) Hypothetical protein yyaK| Length = 299 Score = 46.6 bits (109), Expect = 3e-05 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%) Frame = -1 Query: 401 SEEFLFRGALMPIFGL----NWISALVTGAFFGALHLGNGRKYSFAIWATFVGLAYGLA- 237 +EE FRG L+ FG L+ G FG LH N + A+WA L +G Sbjct: 159 AEELFFRGFLLQAFGRLTKNPLFLTLIVGGLFGVLHFANPEMNNGAVWAGIEYLTFGFVW 218 Query: 236 ---TIASSSIIVPMASHSXNNI 180 TI + SI + + +H+ NN+ Sbjct: 219 TYYTIKTGSIEISLGAHAANNM 240
>YPBD_BACSU (P50730) Hypothetical protein ypbD| Length = 189 Score = 39.7 bits (91), Expect = 0.003 Identities = 26/78 (33%), Positives = 37/78 (47%) Frame = -1 Query: 428 IVVACLPGISEEFLFRGALMPIFGLNWISALVTGAFFGALHLGNGRKYSFAIWATFVGLA 249 I + L +EE LFRG L GL W ++L+ F ALH K+ I T + Sbjct: 81 IFLTLLIAFAEEMLFRGVLQTHIGL-WTASLI----FAALHFRYLSKWLLFIMVTAISFL 135 Query: 248 YGLATIASSSIIVPMASH 195 GL + ++ VPM +H Sbjct: 136 LGLMYEWTGNLFVPMTAH 153
>YPRA_ECOLI (P13974) Hypothetical 24.3 kDa protein (URF 1)| Length = 217 Score = 37.7 bits (86), Expect = 0.012 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Frame = -1 Query: 428 IVVACLPGISEEFLFRGALMPIFGLN-----WISALVTGAFFGALHLGNGRKYSFAIWAT 264 + + L ++EE LFRG ++ +F W+ AL+T F A H + A Sbjct: 125 LTIFILAPLNEETLFRGIMLNVFRSRYCWTMWLGALITSLLFVAAHSQYQNLLTLA-ELF 183 Query: 263 FVGLAYGLATIASSSIIVPMASHSXNNIIG 174 VGL +A I S +++P+ H +G Sbjct: 184 LVGLITSVARIRSGGLLLPVLLHMEATTLG 213
>YHB0_YEAST (P38748) Hypothetical 67.5 kDa protein in PRPS4-STE20 intergenic| region Length = 585 Score = 34.7 bits (78), Expect = 0.10 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = -3 Query: 429 HCSCLSPWDKRRVPVSRGTDANFWIE-LDKRPGNWCLFRCSSLGQRQEIFICXL-GNIRW 256 HC CL+ W R PV R + E L K+ G+ C++ G ++IC + GN+ Sbjct: 264 HCQCLNKWKNSRCPVCRHSSLRLSRESLLKQAGDSA--HCATCGSTDNLWICLICGNV-- 319 Query: 255 PCLWFSXHSFLKHH 214 C ++ +KH+ Sbjct: 320 GCGRYNSKHAIKHY 333
>Y715_MYCCT (P45613) Hypothetical protein MCAP_0715 (ORF1)| Length = 336 Score = 33.9 bits (76), Expect = 0.18 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Frame = -1 Query: 428 IVVACLPGISEEFLFRGALMPIFGLNWISALVTGAFFGALHLGNGRKYS---FAIWATFV 258 I+ + + EE + R AL +S +V+ +FG LH+ +G Y+ + I F Sbjct: 241 ILTVFIAPLCEEIVARQALFTGVSNKVLSIIVSSLYFGILHISSGDVYNIFPYVIGGFFF 300 Query: 257 GLAYGLATIASSSIIVPMASHSXNNIIGGLL 165 LA+ + + ++ SHS N+I +L Sbjct: 301 SLAF---SFSKGNLSYCWLSHSFYNLISVVL 328
>FACE2_DROME (Q9U1H8) CAAX prenyl protease 2 (EC 3.4.22.-) (Prenyl| protein-specific endoprotease 2) (Farnesylated proteins-converting enzyme 2) (FACE-2) (Protein severas) Length = 302 Score = 32.3 bits (72), Expect = 0.51 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 18/95 (18%) Frame = -1 Query: 404 ISEEFLFRGALMPIFGLNW---ISALVTGAFFGALHLGN-------GRKYSFA------- 276 +SEEF+FR +MP+ ++ ++ +T FFG HL + G + S A Sbjct: 158 LSEEFVFRACMMPLILQSFSPLVAVFITPLFFGVAHLHHIAERLSLGVELSTALLIGLFQ 217 Query: 275 -IWATFVGLAYGLATIASSSIIVPMASHSXNNIIG 174 I+ T G + ++ P+ H+ N +G Sbjct: 218 FIYTTLFGFYSAFLFARTGHVMAPILVHAFCNHMG 252
>PAFA_BOVIN (Q28017) Platelet-activating factor acetylhydrolase precursor (EC| 3.1.1.47) (PAF acetylhydrolase) (PAF 2-acylhydrolase) (LDL-associated phospholipase A2) (LDL-PLA(2)) (2-acetyl-1-alkylglycerophosphocholine esterase) (1-alkyl-2-acetylglyceropho Length = 444 Score = 32.0 bits (71), Expect = 0.67 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 14/103 (13%) Frame = -1 Query: 374 LMPIFGLNWISALVTGAFFGAL--------HLGNGRKYSFAIWATFVGL------AYGLA 237 L G +W+ + G FFG++ HL G KY I++ +G A G+ Sbjct: 107 LSKFLGTHWLVGKIMGLFFGSMTTPAAWNAHLRTGEKYPLIIFSHGLGAFRTIYSAIGI- 165 Query: 236 TIASSSIIVPMASHSXNNIIGGLLWRFRDNSEREM*NGQYFLL 108 +AS IV H + + F+D S E+ N + L Sbjct: 166 DLASHGFIVAAVEHRDGS--ASSTYYFKDQSAVEIGNKSWLYL 206
>YBDJ_LACLA (Q9CJ66) Hypothetical UPF0177 protein ybdJ| Length = 226 Score = 30.4 bits (67), Expect = 1.9 Identities = 24/80 (30%), Positives = 37/80 (46%) Frame = -1 Query: 404 ISEEFLFRGALMPIFGLNWISALVTGAFFGALHLGNGRKYSFAIWATFVGLAYGLATIAS 225 ISEE ++R L +F ++ V+ F +H G YSF ++ + L LA Sbjct: 141 ISEELIYREYLYRLFDKKCLACFVSVTMFAWVH--TGFTYSFFLYLP-ISLVVTLAYHRR 197 Query: 224 SSIIVPMASHSXNNIIGGLL 165 +I +A HS N+I L Sbjct: 198 KAIGESIALHSSINLINTYL 217
>YAJF_LACLA (Q9CJB0) Hypothetical UPF0177 protein yajF| Length = 201 Score = 28.5 bits (62), Expect = 7.4 Identities = 21/62 (33%), Positives = 29/62 (46%) Frame = -1 Query: 422 VACLPGISEEFLFRGALMPIFGLNWISALVTGAFFGALHLGNGRKYSFAIWATFVGLAYG 243 VA L I EE +FR ++ IF N I+ + + F +H G YS W + L Sbjct: 132 VALLAPILEESIFRASIYKIFSNNKIAFVFSSLLFTFMHSG----YS---WVFLIYLPMS 184 Query: 242 LA 237 LA Sbjct: 185 LA 186
>FTSK_RHILO (Q98EH3) DNA translocase ftsK| Length = 887 Score = 28.5 bits (62), Expect = 7.4 Identities = 10/29 (34%), Positives = 21/29 (72%) Frame = -1 Query: 263 FVGLAYGLATIASSSIIVPMASHSXNNII 177 F+ +A+G+A++A+ ++ P SH+ NN + Sbjct: 35 FLAVAFGVASLATWNVADPSFSHATNNTV 63
>SYK_RICCN (Q92IB5) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 527 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -1 Query: 368 PIFGLNWISALVTGAFFGALHLGNGRKYS 282 P FG+ W + V +G HL N R YS Sbjct: 241 PDFGMRWAALKVDYEMYGKDHLANARLYS 269
>MMPL9_MYCTU (P95235) Putative membrane protein mmpL9| Length = 962 Score = 28.1 bits (61), Expect = 9.7 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = -1 Query: 311 LHLGNGRKYSFAIWATFVGLAYGLATIASSSIIVPMASHSXNNIIGGLLWRFRD 150 L LG S IW FVGL TI + S+IV +A S N++ L+ RF++ Sbjct: 804 LSLGTAFGLSVLIWQHFVGLQVHW-TIVAMSVIVLLAVGSDYNLL--LVSRFKE 854
>SUS2_ORYSA (P31924) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 2) Length = 816 Score = 28.1 bits (61), Expect = 9.7 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 10/93 (10%) Frame = -3 Query: 387 VSRGTDANFWIELDKRPGNWCLFRCS---SLGQRQEIFICXLGN-------IRWPCLWFS 238 V GT+ NF +ELD P N R S S+G + L + +P L Sbjct: 128 VEEGTNNNFVLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLL--- 184 Query: 237 XHSFLKHHSPNGFSLHXQYYWRLTLALQGQLRK 139 +FL+ H+ G ++ R ALQG LRK Sbjct: 185 --NFLRAHNYKGMTMMLNDRIRSLSALQGALRK 215
>SYK_RICPR (Q9ZDF8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 528 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -1 Query: 368 PIFGLNWISALVTGAFFGALHLGNGRKYS 282 P FG+ W + V +G HL N R YS Sbjct: 236 PDFGMRWAALKVDYEMYGKDHLANSRLYS 264 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,432,800 Number of Sequences: 219361 Number of extensions: 1147251 Number of successful extensions: 2853 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2707 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2852 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
