ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073450.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 6e-77
2gb|AC135922.2| Oryza sativa (japonica cultivar-group) chromosome... 137 3e-29
3gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome... 137 3e-29
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
5gb|AC125643.3| Rattus norvegicus 4 BAC CH230-55N7 (Children's Ho... 42 1.5
6gb|AC132274.3| Mus musculus BAC clone RP24-341I21 from chromosom... 40 5.8
7ref|XM_382240.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 5.8
8emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j2... 40 5.8
9emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f2... 40 5.8
10dbj|AK132998.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.8
11gb|AE010165.1| Pyrococcus furiosus DSM 3638, section 40 of 173 o... 40 5.8
12gb|AF303430.1|AF303430 Mus musculus EIG3 (Eig3) gene, complete cds 40 5.8
13emb|AL133240.4|CNS01DUD Human chromosome 14 DNA sequence BAC R-6... 40 5.8
14gb|AC093445.4| Mus musculus strain C57BL/6J chromosome 1 clone r... 40 5.8
15emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chro... 40 5.8
16emb|AL121773.5|CNS01DSE Human chromosome 14 DNA sequence BAC R-4... 40 5.8
17emb|AL670720.7| Mouse DNA sequence from clone RP23-321M9 on chro... 40 5.8
18dbj|AB038653.1| Homo sapiens genomic DNA, chromosome 14q32.1, BA... 40 5.8 
>dbj|AK073450.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046F02, full
            insert sequence
          Length = 2182

 Score =  295 bits (149), Expect = 6e-77
 Identities = 245/278 (88%)
 Strand = Plus / Minus

                                                                        
Query: 157  aagcgccaaagtaagcctccaataatattgttnatggagtgagaagccattgggactatg 216
            |||||||||| || |||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 1962 aagcgccaaattaggcctccgataatattgtttatggagtgagaagccattggaactatg 1903

                                                                        
Query: 217  atgcttgaggaagctatggtngctaaaccataggcaaggccaacgaatgttgcccagatn 276
            |||||||| ||||||||||| ||||||||||| || | |||||| || ||||||||||| 
Sbjct: 1902 atgcttgaagaagctatggtagctaaaccatatgctacgccaacaaacgttgcccagatt 1843

                                                                        
Query: 277  gcaaatgaatatttcctgccgttgcccaagtgaagagcaccgaaaaaggcaccagttacc 336
            |||||||||||||| ||||| |||||||||||||||  |||||||| ||||| |||||| 
Sbjct: 1842 gcaaatgaatattttctgccattgcccaagtgaagaataccgaaaatggcactagttaca 1783

                                                                        
Query: 337  agggcgcttatccaattcaatccaaaaattggcatcagtgcccctcgaaacaggaactct 396
            | ||| |||||||| |||| |||||| || ||||||| ||||||||||||||| | ||| 
Sbjct: 1782 aaggcacttatccagttcagtccaaagataggcatcaatgcccctcgaaacagcacctcc 1723

                                                  
Query: 397  tcgcttatcccagggagacaagcaactacaatgtaatc 434
            |||||||||||||| |||||||||||||| || |||||
Sbjct: 1722 tcgcttatcccaggaagacaagcaactacgatataatc 1685
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>gb|AC135922.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone
            P0411C02, complete sequence
          Length = 145676

 Score =  137 bits (69), Expect = 3e-29
 Identities = 103/115 (89%)
 Strand = Plus / Plus

                                                                        
Query: 157  aagcgccaaagtaagcctccaataatattgttnatggagtgagaagccattgggactatg 216
            |||||||||| || |||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 3962 aagcgccaaattaggcctccgataatattgtttatggagtgagaagccattggaactatg 4021

                                                                   
Query: 217  atgcttgaggaagctatggtngctaaaccataggcaaggccaacgaatgttgccc 271
            |||||||| ||||||||||| ||||||||||| || | |||||| || |||||||
Sbjct: 4022 atgcttgaagaagctatggtagctaaaccatatgctacgccaacaaacgttgccc 4076



 Score =  121 bits (61), Expect = 2e-24
 Identities = 105/120 (87%)
 Strand = Plus / Plus

                                                                        
Query: 270  ccagatngcaaatgaatatttcctgccgttgcccaagtgaagagcaccgaaaaaggcacc 329
            |||||| |||||||||||||| ||||| |||||||||||||||  |||||||| ||||| 
Sbjct: 4271 ccagattgcaaatgaatattttctgccattgcccaagtgaagaataccgaaaatggcact 4330

                                                                        
Query: 330  agttaccagggcgcttatccaattcaatccaaaaattggcatcagtgcccctcgaaacag 389
            |||||| | ||| |||||||| |||| |||||| || ||||||| |||||||||||||||
Sbjct: 4331 agttacaaaggcacttatccagttcagtccaaagataggcatcaatgcccctcgaaacag 4390



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 397  tcgcttatcccagggagacaagcaactacaatgtaatc 434
            |||||||||||||| |||||||||||||| || |||||
Sbjct: 4485 tcgcttatcccaggaagacaagcaactacgatataatc 4522
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>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0508G08,
             complete sequence
          Length = 141383

 Score =  137 bits (69), Expect = 3e-29
 Identities = 103/115 (89%)
 Strand = Plus / Plus

                                                                         
Query: 157   aagcgccaaagtaagcctccaataatattgttnatggagtgagaagccattgggactatg 216
             |||||||||| || |||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 84431 aagcgccaaattaggcctccgataatattgtttatggagtgagaagccattggaactatg 84490

                                                                    
Query: 217   atgcttgaggaagctatggtngctaaaccataggcaaggccaacgaatgttgccc 271
             |||||||| ||||||||||| ||||||||||| || | |||||| || |||||||
Sbjct: 84491 atgcttgaagaagctatggtagctaaaccatatgctacgccaacaaacgttgccc 84545



 Score =  121 bits (61), Expect = 2e-24
 Identities = 105/120 (87%)
 Strand = Plus / Plus

                                                                         
Query: 270   ccagatngcaaatgaatatttcctgccgttgcccaagtgaagagcaccgaaaaaggcacc 329
             |||||| |||||||||||||| ||||| |||||||||||||||  |||||||| ||||| 
Sbjct: 84740 ccagattgcaaatgaatattttctgccattgcccaagtgaagaataccgaaaatggcact 84799

                                                                         
Query: 330   agttaccagggcgcttatccaattcaatccaaaaattggcatcagtgcccctcgaaacag 389
             |||||| | ||| |||||||| |||| |||||| || ||||||| |||||||||||||||
Sbjct: 84800 agttacaaaggcacttatccagttcagtccaaagataggcatcaatgcccctcgaaacag 84859



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 397   tcgcttatcccagggagacaagcaactacaatgtaatc 434
             |||||||||||||| |||||||||||||| || |||||
Sbjct: 84954 tcgcttatcccaggaagacaagcaactacgatataatc 84991
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  137 bits (69), Expect = 3e-29
 Identities = 103/115 (89%)
 Strand = Plus / Plus

                                                                            
Query: 157      aagcgccaaagtaagcctccaataatattgttnatggagtgagaagccattgggactatg 216
                |||||||||| || |||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 12923885 aagcgccaaattaggcctccgataatattgtttatggagtgagaagccattggaactatg 12923944

                                                                       
Query: 217      atgcttgaggaagctatggtngctaaaccataggcaaggccaacgaatgttgccc 271
                |||||||| ||||||||||| ||||||||||| || | |||||| || |||||||
Sbjct: 12923945 atgcttgaagaagctatggtagctaaaccatatgctacgccaacaaacgttgccc 12923999



 Score =  121 bits (61), Expect = 2e-24
 Identities = 105/120 (87%)
 Strand = Plus / Plus

                                                                            
Query: 270      ccagatngcaaatgaatatttcctgccgttgcccaagtgaagagcaccgaaaaaggcacc 329
                |||||| |||||||||||||| ||||| |||||||||||||||  |||||||| ||||| 
Sbjct: 12924194 ccagattgcaaatgaatattttctgccattgcccaagtgaagaataccgaaaatggcact 12924253

                                                                            
Query: 330      agttaccagggcgcttatccaattcaatccaaaaattggcatcagtgcccctcgaaacag 389
                |||||| | ||| |||||||| |||| |||||| || ||||||| |||||||||||||||
Sbjct: 12924254 agttacaaaggcacttatccagttcagtccaaagataggcatcaatgcccctcgaaacag 12924313



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 397      tcgcttatcccagggagacaagcaactacaatgtaatc 434
                |||||||||||||| |||||||||||||| || |||||
Sbjct: 12924408 tcgcttatcccaggaagacaagcaactacgatataatc 12924445
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>gb|AC125643.3| Rattus norvegicus 4 BAC CH230-55N7 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 216677

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 125    cattctacatttctctttctg 145
              |||||||||||||||||||||
Sbjct: 159739 cattctacatttctctttctg 159759
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>gb|AC132274.3| Mus musculus BAC clone RP24-341I21 from chromosome 3, complete sequence
          Length = 172883

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aagtattgcccattctacat 134
             ||||||||||||||||||||
Sbjct: 61721 aagtattgcccattctacat 61702
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>ref|XM_382240.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02064.1)
           partial mRNA
          Length = 1590

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 agcaccgaaaaaggcaccag 331
           ||||||||||||||||||||
Sbjct: 243 agcaccgaaaaaggcaccag 224
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>emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j24, COMPLETE SEQUENCE
          Length = 126498

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   ttatccaattcaatccaaaa 363
             ||||||||||||||||||||
Sbjct: 19176 ttatccaattcaatccaaaa 19157
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>emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f20, COMPLETE SEQUENCE
          Length = 149149

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    ttatccaattcaatccaaaa 363
              ||||||||||||||||||||
Sbjct: 139465 ttatccaattcaatccaaaa 139446
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>dbj|AK132998.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930547D01 product:unclassifiable, full
            insert sequence
          Length = 2974

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  gagtgagaagccattgggac 212
            ||||||||||||||||||||
Sbjct: 2063 gagtgagaagccattgggac 2082
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>gb|AE010165.1| Pyrococcus furiosus DSM 3638, section 40 of 173 of the complete
           genome
          Length = 10181

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 tacatttctctttctgagtt 149
           ||||||||||||||||||||
Sbjct: 891 tacatttctctttctgagtt 910
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>gb|AF303430.1|AF303430 Mus musculus EIG3 (Eig3) gene, complete cds
          Length = 3139

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 aagtattgcccattctacat 134
           ||||||||||||||||||||
Sbjct: 346 aagtattgcccattctacat 365
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>emb|AL133240.4|CNS01DUD Human chromosome 14 DNA sequence BAC R-639F2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196853

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     tctatgctagtaccacatgt 106
              ||||||||||||||||||||
Sbjct: 145985 tctatgctagtaccacatgt 145966
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>gb|AC093445.4| Mus musculus strain C57BL/6J chromosome 1 clone rp23-267j18, complete
              sequence
          Length = 161678

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    atccaattcaatccaaaaat 365
              ||||||||||||||||||||
Sbjct: 112421 atccaattcaatccaaaaat 112440
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>emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chromosome 12, complete
              sequence
          Length = 201549

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    gttgcccaagtgaagagcac 316
              ||||||||||||||||||||
Sbjct: 125857 gttgcccaagtgaagagcac 125876
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>emb|AL121773.5|CNS01DSE Human chromosome 14 DNA sequence BAC R-472N19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158489

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    tctatgctagtaccacatgt 106
             ||||||||||||||||||||
Sbjct: 86890 tctatgctagtaccacatgt 86909
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>emb|AL670720.7| Mouse DNA sequence from clone RP23-321M9 on chromosome 4, complete
              sequence
          Length = 200628

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    gagtgagaagccattgggac 212
              ||||||||||||||||||||
Sbjct: 126355 gagtgagaagccattgggac 126374
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>dbj|AB038653.1| Homo sapiens genomic DNA, chromosome 14q32.1, BAC clone:B445M7
          Length = 175330

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    tctatgctagtaccacatgt 106
             ||||||||||||||||||||
Sbjct: 66531 tctatgctagtaccacatgt 66512


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,336,036
Number of Sequences: 3902068
Number of extensions: 3336036
Number of successful extensions: 52966
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52914
Number of HSP's gapped (non-prelim): 52
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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