Clone Name | rbasd24g04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK073450.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046F02, full insert sequence Length = 2182 Score = 295 bits (149), Expect = 6e-77 Identities = 245/278 (88%) Strand = Plus / Minus Query: 157 aagcgccaaagtaagcctccaataatattgttnatggagtgagaagccattgggactatg 216 |||||||||| || |||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct: 1962 aagcgccaaattaggcctccgataatattgtttatggagtgagaagccattggaactatg 1903 Query: 217 atgcttgaggaagctatggtngctaaaccataggcaaggccaacgaatgttgcccagatn 276 |||||||| ||||||||||| ||||||||||| || | |||||| || ||||||||||| Sbjct: 1902 atgcttgaagaagctatggtagctaaaccatatgctacgccaacaaacgttgcccagatt 1843 Query: 277 gcaaatgaatatttcctgccgttgcccaagtgaagagcaccgaaaaaggcaccagttacc 336 |||||||||||||| ||||| ||||||||||||||| |||||||| ||||| |||||| Sbjct: 1842 gcaaatgaatattttctgccattgcccaagtgaagaataccgaaaatggcactagttaca 1783 Query: 337 agggcgcttatccaattcaatccaaaaattggcatcagtgcccctcgaaacaggaactct 396 | ||| |||||||| |||| |||||| || ||||||| ||||||||||||||| | ||| Sbjct: 1782 aaggcacttatccagttcagtccaaagataggcatcaatgcccctcgaaacagcacctcc 1723 Query: 397 tcgcttatcccagggagacaagcaactacaatgtaatc 434 |||||||||||||| |||||||||||||| || ||||| Sbjct: 1722 tcgcttatcccaggaagacaagcaactacgatataatc 1685
>gb|AC135922.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0411C02, complete sequence Length = 145676 Score = 137 bits (69), Expect = 3e-29 Identities = 103/115 (89%) Strand = Plus / Plus Query: 157 aagcgccaaagtaagcctccaataatattgttnatggagtgagaagccattgggactatg 216 |||||||||| || |||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct: 3962 aagcgccaaattaggcctccgataatattgtttatggagtgagaagccattggaactatg 4021 Query: 217 atgcttgaggaagctatggtngctaaaccataggcaaggccaacgaatgttgccc 271 |||||||| ||||||||||| ||||||||||| || | |||||| || ||||||| Sbjct: 4022 atgcttgaagaagctatggtagctaaaccatatgctacgccaacaaacgttgccc 4076 Score = 121 bits (61), Expect = 2e-24 Identities = 105/120 (87%) Strand = Plus / Plus Query: 270 ccagatngcaaatgaatatttcctgccgttgcccaagtgaagagcaccgaaaaaggcacc 329 |||||| |||||||||||||| ||||| ||||||||||||||| |||||||| ||||| Sbjct: 4271 ccagattgcaaatgaatattttctgccattgcccaagtgaagaataccgaaaatggcact 4330 Query: 330 agttaccagggcgcttatccaattcaatccaaaaattggcatcagtgcccctcgaaacag 389 |||||| | ||| |||||||| |||| |||||| || ||||||| ||||||||||||||| Sbjct: 4331 agttacaaaggcacttatccagttcagtccaaagataggcatcaatgcccctcgaaacag 4390 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 397 tcgcttatcccagggagacaagcaactacaatgtaatc 434 |||||||||||||| |||||||||||||| || ||||| Sbjct: 4485 tcgcttatcccaggaagacaagcaactacgatataatc 4522
>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0508G08, complete sequence Length = 141383 Score = 137 bits (69), Expect = 3e-29 Identities = 103/115 (89%) Strand = Plus / Plus Query: 157 aagcgccaaagtaagcctccaataatattgttnatggagtgagaagccattgggactatg 216 |||||||||| || |||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct: 84431 aagcgccaaattaggcctccgataatattgtttatggagtgagaagccattggaactatg 84490 Query: 217 atgcttgaggaagctatggtngctaaaccataggcaaggccaacgaatgttgccc 271 |||||||| ||||||||||| ||||||||||| || | |||||| || ||||||| Sbjct: 84491 atgcttgaagaagctatggtagctaaaccatatgctacgccaacaaacgttgccc 84545 Score = 121 bits (61), Expect = 2e-24 Identities = 105/120 (87%) Strand = Plus / Plus Query: 270 ccagatngcaaatgaatatttcctgccgttgcccaagtgaagagcaccgaaaaaggcacc 329 |||||| |||||||||||||| ||||| ||||||||||||||| |||||||| ||||| Sbjct: 84740 ccagattgcaaatgaatattttctgccattgcccaagtgaagaataccgaaaatggcact 84799 Query: 330 agttaccagggcgcttatccaattcaatccaaaaattggcatcagtgcccctcgaaacag 389 |||||| | ||| |||||||| |||| |||||| || ||||||| ||||||||||||||| Sbjct: 84800 agttacaaaggcacttatccagttcagtccaaagataggcatcaatgcccctcgaaacag 84859 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 397 tcgcttatcccagggagacaagcaactacaatgtaatc 434 |||||||||||||| |||||||||||||| || ||||| Sbjct: 84954 tcgcttatcccaggaagacaagcaactacgatataatc 84991
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 137 bits (69), Expect = 3e-29 Identities = 103/115 (89%) Strand = Plus / Plus Query: 157 aagcgccaaagtaagcctccaataatattgttnatggagtgagaagccattgggactatg 216 |||||||||| || |||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct: 12923885 aagcgccaaattaggcctccgataatattgtttatggagtgagaagccattggaactatg 12923944 Query: 217 atgcttgaggaagctatggtngctaaaccataggcaaggccaacgaatgttgccc 271 |||||||| ||||||||||| ||||||||||| || | |||||| || ||||||| Sbjct: 12923945 atgcttgaagaagctatggtagctaaaccatatgctacgccaacaaacgttgccc 12923999 Score = 121 bits (61), Expect = 2e-24 Identities = 105/120 (87%) Strand = Plus / Plus Query: 270 ccagatngcaaatgaatatttcctgccgttgcccaagtgaagagcaccgaaaaaggcacc 329 |||||| |||||||||||||| ||||| ||||||||||||||| |||||||| ||||| Sbjct: 12924194 ccagattgcaaatgaatattttctgccattgcccaagtgaagaataccgaaaatggcact 12924253 Query: 330 agttaccagggcgcttatccaattcaatccaaaaattggcatcagtgcccctcgaaacag 389 |||||| | ||| |||||||| |||| |||||| || ||||||| ||||||||||||||| Sbjct: 12924254 agttacaaaggcacttatccagttcagtccaaagataggcatcaatgcccctcgaaacag 12924313 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 397 tcgcttatcccagggagacaagcaactacaatgtaatc 434 |||||||||||||| |||||||||||||| || ||||| Sbjct: 12924408 tcgcttatcccaggaagacaagcaactacgatataatc 12924445
>gb|AC125643.3| Rattus norvegicus 4 BAC CH230-55N7 (Children's Hospital Oakland Research Institute) complete sequence Length = 216677 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 cattctacatttctctttctg 145 ||||||||||||||||||||| Sbjct: 159739 cattctacatttctctttctg 159759
>gb|AC132274.3| Mus musculus BAC clone RP24-341I21 from chromosome 3, complete sequence Length = 172883 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 aagtattgcccattctacat 134 |||||||||||||||||||| Sbjct: 61721 aagtattgcccattctacat 61702
>ref|XM_382240.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02064.1) partial mRNA Length = 1590 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 agcaccgaaaaaggcaccag 331 |||||||||||||||||||| Sbjct: 243 agcaccgaaaaaggcaccag 224
>emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j24, COMPLETE SEQUENCE Length = 126498 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ttatccaattcaatccaaaa 363 |||||||||||||||||||| Sbjct: 19176 ttatccaattcaatccaaaa 19157
>emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f20, COMPLETE SEQUENCE Length = 149149 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ttatccaattcaatccaaaa 363 |||||||||||||||||||| Sbjct: 139465 ttatccaattcaatccaaaa 139446
>dbj|AK132998.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930547D01 product:unclassifiable, full insert sequence Length = 2974 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gagtgagaagccattgggac 212 |||||||||||||||||||| Sbjct: 2063 gagtgagaagccattgggac 2082
>gb|AE010165.1| Pyrococcus furiosus DSM 3638, section 40 of 173 of the complete genome Length = 10181 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tacatttctctttctgagtt 149 |||||||||||||||||||| Sbjct: 891 tacatttctctttctgagtt 910
>gb|AF303430.1|AF303430 Mus musculus EIG3 (Eig3) gene, complete cds Length = 3139 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 aagtattgcccattctacat 134 |||||||||||||||||||| Sbjct: 346 aagtattgcccattctacat 365
>emb|AL133240.4|CNS01DUD Human chromosome 14 DNA sequence BAC R-639F2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196853 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 tctatgctagtaccacatgt 106 |||||||||||||||||||| Sbjct: 145985 tctatgctagtaccacatgt 145966
>gb|AC093445.4| Mus musculus strain C57BL/6J chromosome 1 clone rp23-267j18, complete sequence Length = 161678 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 atccaattcaatccaaaaat 365 |||||||||||||||||||| Sbjct: 112421 atccaattcaatccaaaaat 112440
>emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chromosome 12, complete sequence Length = 201549 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 gttgcccaagtgaagagcac 316 |||||||||||||||||||| Sbjct: 125857 gttgcccaagtgaagagcac 125876
>emb|AL121773.5|CNS01DSE Human chromosome 14 DNA sequence BAC R-472N19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158489 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 tctatgctagtaccacatgt 106 |||||||||||||||||||| Sbjct: 86890 tctatgctagtaccacatgt 86909
>emb|AL670720.7| Mouse DNA sequence from clone RP23-321M9 on chromosome 4, complete sequence Length = 200628 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gagtgagaagccattgggac 212 |||||||||||||||||||| Sbjct: 126355 gagtgagaagccattgggac 126374
>dbj|AB038653.1| Homo sapiens genomic DNA, chromosome 14q32.1, BAC clone:B445M7 Length = 175330 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 tctatgctagtaccacatgt 106 |||||||||||||||||||| Sbjct: 66531 tctatgctagtaccacatgt 66512 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,336,036 Number of Sequences: 3902068 Number of extensions: 3336036 Number of successful extensions: 52966 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52914 Number of HSP's gapped (non-prelim): 52 length of query: 434 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 412 effective length of database: 17,147,199,772 effective search space: 7064646306064 effective search space used: 7064646306064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)