ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24f21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EF1G2_ORYSA (Q6YW46) Elongation factor 1-gamma 2 (EF-1-gamma 2) ... 55 6e-08
2EF1G1_ORYSA (Q9ZRI7) Elongation factor 1-gamma 1 (EF-1-gamma 1) ... 54 1e-07
3EF1G3_ORYSA (Q5Z627) Elongation factor 1-gamma 3 (EF-1-gamma 3) ... 52 5e-07
4EF1G1_ARATH (O04487) Probable elongation factor 1-gamma 1 (EF-1-... 50 2e-06
5EF1G2_ARATH (Q9FVT2) Probable elongation factor 1-gamma 2 (EF-1-... 50 2e-06
6EF1G_PRUAV (Q9FUM1) Elongation factor 1-gamma (EF-1-gamma) (eEF-... 47 2e-05

>EF1G2_ORYSA (Q6YW46) Elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma|
           2)
          Length = 418

 Score = 55.1 bits (131), Expect = 6e-08
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = -3

Query: 93  TKVXLSDEAQKKRVEAMIEDLEPFEGQSLLD 1
           TKV +SDEAQK+RV AMIEDLEPFEG+SLLD
Sbjct: 383 TKVDISDEAQKERVSAMIEDLEPFEGESLLD 413



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>EF1G1_ORYSA (Q9ZRI7) Elongation factor 1-gamma 1 (EF-1-gamma 1) (eEF-1B gamma|
           1)
          Length = 418

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 25/31 (80%), Positives = 29/31 (93%)
 Frame = -3

Query: 93  TKVXLSDEAQKKRVEAMIEDLEPFEGQSLLD 1
           TKV +SDEAQK+RV AMIEDLEPFEG++LLD
Sbjct: 383 TKVDISDEAQKERVSAMIEDLEPFEGEALLD 413



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>EF1G3_ORYSA (Q5Z627) Elongation factor 1-gamma 3 (EF-1-gamma 3) (eEF-1B gamma|
           3)
          Length = 416

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 25/31 (80%), Positives = 27/31 (87%)
 Frame = -3

Query: 93  TKVXLSDEAQKKRVEAMIEDLEPFEGQSLLD 1
           TKV LSDEAQK+RV AMIED EPFEG+ LLD
Sbjct: 381 TKVDLSDEAQKERVNAMIEDQEPFEGEDLLD 411



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>EF1G1_ARATH (O04487) Probable elongation factor 1-gamma 1 (EF-1-gamma 1)|
           (eEF-1B gamma 1)
          Length = 414

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 23/31 (74%), Positives = 27/31 (87%)
 Frame = -3

Query: 93  TKVXLSDEAQKKRVEAMIEDLEPFEGQSLLD 1
           TKV +SDEAQK+RV  MIED EPFEG++LLD
Sbjct: 379 TKVDISDEAQKERVSQMIEDAEPFEGEALLD 409



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>EF1G2_ARATH (Q9FVT2) Probable elongation factor 1-gamma 2 (EF-1-gamma 2)|
           (eEF-1B gamma 2)
          Length = 413

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 23/31 (74%), Positives = 27/31 (87%)
 Frame = -3

Query: 93  TKVXLSDEAQKKRVEAMIEDLEPFEGQSLLD 1
           TKV +SDEAQK+RV  MIED EPFEG++LLD
Sbjct: 378 TKVDISDEAQKERVSQMIEDAEPFEGEALLD 408



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>EF1G_PRUAV (Q9FUM1) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)|
          Length = 422

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = -3

Query: 93  TKVXLSDEAQKKRVEAMIEDLEPFEGQSLLD 1
           TKV LSDE QK+RV  +IED EPFEG++LLD
Sbjct: 387 TKVDLSDENQKERVNQVIEDQEPFEGEALLD 417


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,961,607
Number of Sequences: 219361
Number of extensions: 103579
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 80,573,946
effective HSP length: 10
effective length of database: 78,380,336
effective search space used: 1881128064
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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