ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24f21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY224444.1| Oryza sativa (japonica cultivar-group) isolate 22... 72 3e-10
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 3e-10
3dbj|AP005460.3| Oryza sativa (japonica cultivar-group) genomic D... 72 3e-10
4dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic D... 72 3e-10
5dbj|AK104931.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 3e-10
6dbj|AK103928.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 3e-10
7dbj|AK101977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 3e-10
8dbj|AK068226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 3e-10
9gb|BT016763.1| Zea mays clone Contig596 mRNA sequence 62 3e-07
10ref|XM_464690.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-05
11gb|BT016270.1| Zea mays clone Contig103 mRNA sequence 56 2e-05
12dbj|AK061944.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-05
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
14dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
15dbj|D89802.1| Oryza sativa mRNA for elongation factor 1B gamma, ... 56 2e-05
16ref|XM_464689.1| Oryza sativa (japonica cultivar-group), mRNA 54 8e-05
17gb|AY224455.1| Oryza sativa (japonica cultivar-group) isolate 23... 54 8e-05
18dbj|AK103901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 8e-05
19gb|BT016532.1| Zea mays clone Contig365 mRNA sequence 40 1.2
20gb|AY109340.1| Zea mays CL5298_2 mRNA sequence 40 1.2
21gb|BT016452.1| Zea mays clone Contig285 mRNA sequence 38 4.6
22gb|AF176496.1|AF176496 Vitis labrusca x Vitis vinifera elongatio... 38 4.6 
>gb|AY224444.1| Oryza sativa (japonica cultivar-group) isolate 22944 elongation
            factor 1 gamma-like protein mRNA, partial cds
          Length = 1242

 Score = 71.9 bits (36), Expect = 3e-10
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                        
Query: 17   ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
            ||||||||||||||  ||||||| |||||||| |  |||||||  |||||||||||||| 
Sbjct: 1208 ccctcgaacggctcctggtcctcaatcatggcattgacacgctctttctgggcctcatca 1149

                               
Query: 77   gagagggnaaccttggtcc 95
            ||||||  |||||||||||
Sbjct: 1148 gagaggtcaaccttggtcc 1130
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 3e-10
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                            
Query: 17       ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
                ||||||||||||||  ||||||| |||||||| |  |||||||  |||||||||||||| 
Sbjct: 21788166 ccctcgaacggctcctggtcctcaatcatggcattgacacgctctttctgggcctcatca 21788225

                                   
Query: 77       gagagggnaaccttggtcc 95
                ||||||  |||||||||||
Sbjct: 21788226 gagaggtcaaccttggtcc 21788244
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>dbj|AP005460.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0610D01
          Length = 146418

 Score = 71.9 bits (36), Expect = 3e-10
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                         
Query: 17    ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
             ||||||||||||||  ||||||| |||||||| |  |||||||  |||||||||||||| 
Sbjct: 46247 ccctcgaacggctcctggtcctcaatcatggcattgacacgctctttctgggcctcatca 46306

                                
Query: 77    gagagggnaaccttggtcc 95
             ||||||  |||||||||||
Sbjct: 46307 gagaggtcaaccttggtcc 46325
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>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0006A22
          Length = 190690

 Score = 71.9 bits (36), Expect = 3e-10
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                         
Query: 17    ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
             ||||||||||||||  ||||||| |||||||| |  |||||||  |||||||||||||| 
Sbjct: 10651 ccctcgaacggctcctggtcctcaatcatggcattgacacgctctttctgggcctcatca 10710

                                
Query: 77    gagagggnaaccttggtcc 95
             ||||||  |||||||||||
Sbjct: 10711 gagaggtcaaccttggtcc 10729
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>dbj|AK104931.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-G02, full
            insert sequence
          Length = 1519

 Score = 71.9 bits (36), Expect = 3e-10
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                        
Query: 17   ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
            ||||||||||||||  ||||||| |||||||| |  |||||||  |||||||||||||| 
Sbjct: 1335 ccctcgaacggctcctggtcctcaatcatggcattgacacgctctttctgggcctcatca 1276

                               
Query: 77   gagagggnaaccttggtcc 95
            ||||||  |||||||||||
Sbjct: 1275 gagaggtcaaccttggtcc 1257
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>dbj|AK103928.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D10, full
            insert sequence
          Length = 1529

 Score = 71.9 bits (36), Expect = 3e-10
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                        
Query: 17   ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
            ||||||||||||||  ||||||| |||||||| |  |||||||  |||||||||||||| 
Sbjct: 1326 ccctcgaacggctcctggtcctcaatcatggcattgacacgctctttctgggcctcatca 1267

                               
Query: 77   gagagggnaaccttggtcc 95
            ||||||  |||||||||||
Sbjct: 1266 gagaggtcaaccttggtcc 1248
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>dbj|AK101977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076P04, full
            insert sequence
          Length = 1721

 Score = 71.9 bits (36), Expect = 3e-10
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                        
Query: 17   ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
            ||||||||||||||  ||||||| |||||||| |  |||||||  |||||||||||||| 
Sbjct: 1566 ccctcgaacggctcctggtcctcaatcatggcattgacacgctctttctgggcctcatca 1507

                               
Query: 77   gagagggnaaccttggtcc 95
            ||||||  |||||||||||
Sbjct: 1506 gagaggtcaaccttggtcc 1488
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>dbj|AK068226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D22, full
            insert sequence
          Length = 1593

 Score = 71.9 bits (36), Expect = 3e-10
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                        
Query: 17   ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
            ||||||||||||||  ||||||| |||||||| |  |||||||  |||||||||||||| 
Sbjct: 1392 ccctcgaacggctcctggtcctcaatcatggcattgacacgctctttctgggcctcatca 1333

                               
Query: 77   gagagggnaaccttggtcc 95
            ||||||  |||||||||||
Sbjct: 1332 gagaggtcaaccttggtcc 1314
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>gb|BT016763.1| Zea mays clone Contig596 mRNA sequence
          Length = 1658

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                        
Query: 2    tccagcaaggactgcccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttc 61
            |||||||||| ||  |||||||| |||||  ||||||| |||||||| |  || |||| |
Sbjct: 1325 tccagcaaggcctcgccctcgaagggctcctggtcctcaatcatggcattgacccgctcc 1266

                                              
Query: 62   ttctgggcctcatcggagagggnaaccttggtcc 95
            ||||| |||||||| ||||||  |||||||||||
Sbjct: 1265 ttctgtgcctcatcagagaggtcaaccttggtcc 1232
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>ref|XM_464690.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1718

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                        
Query: 17   ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
            ||||| || |||||||||||||| ||||||||    || |||| ||||||||||||||| 
Sbjct: 1349 ccctcaaatggctcaaggtcctcaatcatggcgctgacgcgctccttctgggcctcatct 1290

                               
Query: 77   gagagggnaaccttggtcc 95
            |||| |  |||||||||||
Sbjct: 1289 gagatgtcaaccttggtcc 1271
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>gb|BT016270.1| Zea mays clone Contig103 mRNA sequence
          Length = 1680

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 33   ggtcctcgatcatggcctcaacacgcttcttctgggcctcatcggaga 80
            |||||||||||||||| |  ||||||| ||||||||||||||| ||||
Sbjct: 1371 ggtcctcgatcatggcattgacacgctccttctgggcctcatcagaga 1324
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>dbj|AK061944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E02, full
            insert sequence
          Length = 1723

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                        
Query: 17   ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
            ||||| || |||||||||||||| ||||||||    || |||| ||||||||||||||| 
Sbjct: 1354 ccctcaaatggctcaaggtcctcaatcatggcgctgacgcgctccttctgggcctcatct 1295

                               
Query: 77   gagagggnaaccttggtcc 95
            |||| |  |||||||||||
Sbjct: 1294 gagatgtcaaccttggtcc 1276
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                           
Query: 17      ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
               ||||| || |||||||||||||| ||||||||    || |||| ||||||||||||||| 
Sbjct: 6724746 ccctcaaatggctcaaggtcctcaatcatggcgctgacgcgctccttctgggcctcatct 6724687

                                  
Query: 77      gagagggnaaccttggtcc 95
               |||| |  |||||||||||
Sbjct: 6724686 gagatgtcaaccttggtcc 6724668



 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                           
Query: 2       tccagcaaggactgcccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttc 61
               |||||||| ||||  ||||| || ||||| |||||||| ||||||||    || |||| |
Sbjct: 6719156 tccagcaacgactcgccctcaaatggctccaggtcctcaatcatggcgctgacgcgctcc 6719097

                                                 
Query: 62      ttctgggcctcatcggagagggnaaccttggtcc 95
               |||||||||||||| |||| |  |||||||||||
Sbjct: 6719096 ttctgggcctcatctgagatgtcaaccttggtcc 6719063
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>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1131G07
          Length = 133992

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                         
Query: 17    ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
             ||||| || |||||||||||||| ||||||||    || |||| ||||||||||||||| 
Sbjct: 45799 ccctcaaatggctcaaggtcctcaatcatggcgctgacgcgctccttctgggcctcatct 45740

                                
Query: 77    gagagggnaaccttggtcc 95
             |||| |  |||||||||||
Sbjct: 45739 gagatgtcaaccttggtcc 45721



 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                         
Query: 2     tccagcaaggactgcccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttc 61
             |||||||| ||||  ||||| || ||||| |||||||| ||||||||    || |||| |
Sbjct: 40209 tccagcaacgactcgccctcaaatggctccaggtcctcaatcatggcgctgacgcgctcc 40150

                                               
Query: 62    ttctgggcctcatcggagagggnaaccttggtcc 95
             |||||||||||||| |||| |  |||||||||||
Sbjct: 40149 ttctgggcctcatctgagatgtcaaccttggtcc 40116
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>dbj|D89802.1| Oryza sativa mRNA for elongation factor 1B gamma, complete cds
          Length = 1591

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                        
Query: 17   ccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttcttctgggcctcatcg 76
            ||||| || |||||||||||||| ||||||||    || |||| ||||||||||||||| 
Sbjct: 1314 ccctcaaatggctcaaggtcctcaatcatggcgctgacgcgctccttctgggcctcatct 1255

                               
Query: 77   gagagggnaaccttggtcc 95
            |||| |  |||||||||||
Sbjct: 1254 gagatgtcaaccttggtcc 1236
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>ref|XM_464689.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1708

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 2    tccagcaaggactgcccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttc 61
            |||||||| ||||  ||||| || ||||| |||||||| ||||||||    || |||| |
Sbjct: 1340 tccagcaacgactcgccctcaaatggctccaggtcctcaatcatggcgctgacgcgctcc 1281

                                              
Query: 62   ttctgggcctcatcggagagggnaaccttggtcc 95
            |||||||||||||| |||| |  |||||||||||
Sbjct: 1280 ttctgggcctcatctgagatgtcaaccttggtcc 1247
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>gb|AY224455.1| Oryza sativa (japonica cultivar-group) isolate 23443 elongation
            factor 1 gamma-like protein mRNA, partial cds
          Length = 1230

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 2    tccagcaaggactgcccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttc 61
            |||||||| ||||  ||||| || ||||| |||||||| ||||||||    || |||| |
Sbjct: 1211 tccagcaacgactcgccctcaaatggctccaggtcctcaatcatggcgctgacgcgctcc 1152

                                              
Query: 62   ttctgggcctcatcggagagggnaaccttggtcc 95
            |||||||||||||| |||| |  |||||||||||
Sbjct: 1151 ttctgggcctcatctgagatgtcaaccttggtcc 1118
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>dbj|AK103901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150K18, full
            insert sequence
          Length = 1708

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 2    tccagcaaggactgcccctcgaacggctcaaggtcctcgatcatggcctcaacacgcttc 61
            |||||||| ||||  ||||| || ||||| |||||||| ||||||||    || |||| |
Sbjct: 1340 tccagcaacgactcgccctcaaatggctccaggtcctcaatcatggcgctgacgcgctcc 1281

                                              
Query: 62   ttctgggcctcatcggagagggnaaccttggtcc 95
            |||||||||||||| |||| |  |||||||||||
Sbjct: 1280 ttctgggcctcatctgagatgtcaaccttggtcc 1247
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>gb|BT016532.1| Zea mays clone Contig365 mRNA sequence
          Length = 1536

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 53   acacgcttcttctgggcctcatcggaga 80
            ||||||| ||||||||||||||| ||||
Sbjct: 1257 acacgctccttctgggcctcatcagaga 1230
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>gb|AY109340.1| Zea mays CL5298_2 mRNA sequence
          Length = 1863

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 53   acacgcttcttctgggcctcatcggaga 80
            ||||||| ||||||||||||||| ||||
Sbjct: 1303 acacgctccttctgggcctcatcagaga 1276
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>gb|BT016452.1| Zea mays clone Contig285 mRNA sequence
          Length = 1562

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 53   acacgcttcttctgggcctcatc 75
            ||||||| |||||||||||||||
Sbjct: 1264 acacgctccttctgggcctcatc 1242
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>gb|AF176496.1|AF176496 Vitis labrusca x Vitis vinifera elongation factor eEF1 gamma chain
           (eEF1-gamma) mRNA, partial cds
          Length = 315

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 33/38 (86%)
 Strand = Plus / Minus

                                                 
Query: 53  acacgcttcttctgggcctcatcggagagggnaacctt 90
           ||||||| ||| ||||||||||| ||||||  ||||||
Sbjct: 113 acacgctccttttgggcctcatccgagaggtcaacctt 76


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 446,037
Number of Sequences: 3902068
Number of extensions: 446037
Number of successful extensions: 30997
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30954
Number of HSP's gapped (non-prelim): 38
length of query: 104
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 83
effective length of database: 17,151,101,840
effective search space: 1423541452720
effective search space used: 1423541452720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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