ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd24f15 |
|---|---|
| Clone Library Name | barley_pub |
>PPT1_RAT (P45479) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 90.9 bits (224), Expect = 2e-18 Identities = 44/108 (40%), Positives = 66/108 (61%) Frame = -3 Query: 571 FLPKLNNEIPGERNATYKERFSSLENLVLIMFENDIVVIPRETSWFGYYPDGAFEPVLPP 392 FL +N E N +YKE +L+ V++ F ND +V P ++ WFG+Y G + +P Sbjct: 201 FLADINQE--RHINESYKENLMALKKFVMVKFFNDSIVDPVDSEWFGFYRSGQAKETIPL 258 Query: 391 QQTKLYQEDWIGLKALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYLK 248 Q+T LY ED +GLK +D+AG++ F++ G HL IS HI+P+LK Sbjct: 259 QETTLYTEDRLGLKKMDKAGKLVFLAKEGDHLQISKEWFTAHIIPFLK 306
>PPT1_MOUSE (O88531) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 86.7 bits (213), Expect = 4e-17 Identities = 38/95 (40%), Positives = 61/95 (64%) Frame = -3 Query: 532 NATYKERFSSLENLVLIMFENDIVVIPRETSWFGYYPDGAFEPVLPPQQTKLYQEDWIGL 353 N +YK+ +L+ V++ F ND +V P ++ WFG+Y G + +P Q++ LY ED +GL Sbjct: 212 NESYKKNLMALKKFVMVKFFNDSIVDPVDSEWFGFYRSGQAKETIPLQESTLYTEDRLGL 271 Query: 352 KALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYLK 248 K +D+AG++ F++ G HL IS HI+P+LK Sbjct: 272 KKMDKAGKLVFLAKEGDHLQISKEWFTAHIIPFLK 306
>PPT1_BOVIN (P45478) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 86.3 bits (212), Expect = 6e-17 Identities = 40/108 (37%), Positives = 68/108 (62%) Frame = -3 Query: 571 FLPKLNNEIPGERNATYKERFSSLENLVLIMFENDIVVIPRETSWFGYYPDGAFEPVLPP 392 FL +N E N +YK+ +L+ V++ F ND +V P ++ WFG+Y G + +P Sbjct: 201 FLADINQE--RGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPL 258 Query: 391 QQTKLYQEDWIGLKALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYLK 248 Q++ LY +D +GLKA+D+AG++ F+++ G HL +S HI+P+L+ Sbjct: 259 QESTLYTQDRLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE 306
>PPT1_MACFA (Q8HXW6) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 84.7 bits (208), Expect = 2e-16 Identities = 40/107 (37%), Positives = 64/107 (59%) Frame = -3 Query: 571 FLPKLNNEIPGERNATYKERFSSLENLVLIMFENDIVVIPRETSWFGYYPDGAFEPVLPP 392 FL +N E N +YK+ +L+ V++ F ND +V P ++ WFG+Y G + +P Sbjct: 201 FLADINQE--RGINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPL 258 Query: 391 QQTKLYQEDWIGLKALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYL 251 Q+T LY +D +GLK +D AG++ F++ G HL +S HI+P+L Sbjct: 259 QETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 305
>PPT1_HUMAN (P50897) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 84.7 bits (208), Expect = 2e-16 Identities = 40/107 (37%), Positives = 64/107 (59%) Frame = -3 Query: 571 FLPKLNNEIPGERNATYKERFSSLENLVLIMFENDIVVIPRETSWFGYYPDGAFEPVLPP 392 FL +N E N +YK+ +L+ V++ F ND +V P ++ WFG+Y G + +P Sbjct: 201 FLADINQE--RGINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPL 258 Query: 391 QQTKLYQEDWIGLKALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYL 251 Q+T LY +D +GLK +D AG++ F++ G HL +S HI+P+L Sbjct: 259 QETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 305
>PPT2_RAT (O70489) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 2) (PPT-2) Length = 302 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/82 (32%), Positives = 42/82 (51%) Frame = -3 Query: 571 FLPKLNNEIPGERNATYKERFSSLENLVLIMFENDIVVIPRETSWFGYYPDGAFEPVLPP 392 FL +N E +++ F + LVLI +D V+ P ++S+FG+Y A E VL Sbjct: 194 FLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFY--DANETVLEM 251 Query: 391 QQTKLYQEDWIGLKALDEAGRV 326 ++ +Y D GLK L G + Sbjct: 252 EEQPVYLRDSFGLKTLLARGAI 273
>PPT2_MOUSE (O35448) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 2) (PPT-2) Length = 302 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/82 (32%), Positives = 42/82 (51%) Frame = -3 Query: 571 FLPKLNNEIPGERNATYKERFSSLENLVLIMFENDIVVIPRETSWFGYYPDGAFEPVLPP 392 FL +N E +++ F + LVLI +D V+ P ++S+FG+Y A E VL Sbjct: 194 FLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFY--DANETVLEM 251 Query: 391 QQTKLYQEDWIGLKALDEAGRV 326 ++ +Y D GLK L G + Sbjct: 252 EEQPVYLRDSFGLKTLLARGAI 273
>PPT2_HUMAN (Q9UMR5) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 2) (PPT-2) (G14) Length = 302 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/82 (32%), Positives = 43/82 (52%) Frame = -3 Query: 571 FLPKLNNEIPGERNATYKERFSSLENLVLIMFENDIVVIPRETSWFGYYPDGAFEPVLPP 392 FL +N E +++ F + +LVLI +D V+ P ++S+FG+Y A E VL Sbjct: 194 FLALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQSSFFGFY--DANETVLEM 251 Query: 391 QQTKLYQEDWIGLKALDEAGRV 326 ++ +Y D GLK L G + Sbjct: 252 EEQLVYLRDSFGLKTLLARGAI 273
>RAD50_METKA (Q8TXI4) DNA double-strand break repair rad50 ATPase| Length = 876 Score = 32.0 bits (71), Expect = 1.3 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Frame = -3 Query: 520 KERFSSLENLVLIMFENDIVVIPRETSWFGYYPDGAFEPVLPP---QQTKLYQE--DWIG 356 KER LE +V +++ + +E F Y D A E VLP + +K+ Q+ D G Sbjct: 705 KERKERLERVV------EVLSLCKEV--FRYSRDVAREKVLPAVEREASKILQDLSDRYG 756 Query: 355 LKALDEAGRVKFVSVPGGH 299 +++ G V VSVPGGH Sbjct: 757 SLRIEDDGAVIRVSVPGGH 775
>DOF42_ARATH (Q9SUB1) Hypothetical Dof zinc finger protein DOF4.2 (AtDOF4.2)| Length = 194 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = +1 Query: 262 QCVSSCRCWRCPGGLLAPTRT*LARPRPGPSDRSSLPDTALSAEEVGLAQRLHQGNNQTT 441 +C + CRCW GG+L P G D+S+LP S+ + + QGN+Q Sbjct: 47 KCKNCCRCWT-HGGVLRNI------PVTGICDKSNLPKIDQSSVSQMILAEIQQGNHQPF 99 Query: 442 K 444 K Sbjct: 100 K 100
>CK5P3_RAT (Q9JLH7) CDK5 regulatory subunit-associated protein 3 (CDK5| activator-binding protein C53) Length = 504 Score = 30.8 bits (68), Expect = 2.9 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -3 Query: 295 GISNSDMRKHIVPYLKDKPSASASLAATWHAIGEALGLMGNDVGVLLQSST 143 GI+ ++R+ ++ +KD PS A + A ++GEA+ L V + S T Sbjct: 169 GITGDNVRRELLALVKDLPSQLAEIGAGAQSLGEAIDLYQACVEFVCDSPT 219
>CK5P3_MOUSE (Q99LM2) CDK5 regulatory subunit-associated protein 3| Length = 503 Score = 30.8 bits (68), Expect = 2.9 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -3 Query: 295 GISNSDMRKHIVPYLKDKPSASASLAATWHAIGEALGLMGNDVGVLLQSST 143 GI+ ++R+ ++ +KD PS A + A ++GEA+ L V + S T Sbjct: 169 GITGDNVRRELLALVKDLPSQLAEIGAGAQSLGEAIDLYQACVEFVCDSPT 219
>UBX3_SCHPO (Q9UT81) UBX domain-containing protein 3| Length = 410 Score = 29.6 bits (65), Expect = 6.5 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = -3 Query: 274 RKHIVPYLKDKPSASASLAATWHAIGEALG 185 R+H + L ++ S +SLA++W ++G+ LG Sbjct: 151 RQHTISPLDEQDSGPSSLASSWASVGQRLG 180
>DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (Diglyceride| kinase theta) (DGK-theta) (DAG kinase theta) Length = 942 Score = 29.6 bits (65), Expect = 6.5 Identities = 13/20 (65%), Positives = 13/20 (65%) Frame = -2 Query: 350 GPGRGRASQVRVGARRPPGH 291 GPGR RA VR AR PGH Sbjct: 42 GPGRDRAGGVRARARAAPGH 61
>NEUR_DROVI (Q24746) Protein neuralized| Length = 747 Score = 29.6 bits (65), Expect = 6.5 Identities = 20/78 (25%), Positives = 38/78 (48%) Frame = -3 Query: 400 LPPQQTKLYQEDWIGLKALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYLKDKPSASASL 221 LP QQ +L Q+ L ++ R S+PGG + + ++ +H++P L+ Sbjct: 280 LPQQQQQLPQQQLTAHHPLQQSRR----SLPGGTGVVVDHELERHVMPSLQ--------- 326 Query: 220 AATWHAIGEALGLMGNDV 167 + H G A G++ +D+ Sbjct: 327 --SLHLAGTAAGIIEHDL 342
>NED4L_PONPY (Q5RBF2) E3 ubiquitin-protein ligase NEDD4-like protein (EC| 6.3.2.-) Length = 959 Score = 29.6 bits (65), Expect = 6.5 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -3 Query: 274 RKHIVPYLKDKPSASASLAATWHAIGEALGLMGNDVGVLL 155 R+HI L+ +PS + W I E + + G+ +G+ L Sbjct: 256 RRHISEDLEPEPSEGGDVPEPWETISEEVNIAGDSLGLAL 295
>NED4L_HUMAN (Q96PU5) E3 ubiquitin-protein ligase NEDD4-like protein (EC| 6.3.2.-) (Nedd4-2) (NEDD4.2) Length = 975 Score = 29.6 bits (65), Expect = 6.5 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -3 Query: 274 RKHIVPYLKDKPSASASLAATWHAIGEALGLMGNDVGVLL 155 R+HI L+ +PS + W I E + + G+ +G+ L Sbjct: 252 RRHISEDLEPEPSEGGDVPEPWETISEEVNIAGDSLGLAL 291 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,374,236 Number of Sequences: 219361 Number of extensions: 1812921 Number of successful extensions: 5105 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4916 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5104 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
