ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X13366.1|CHSCPSBD Secale cereale chloroplast psbD, psbC and ... 80 1e-12
2emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome 64 8e-08
3gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast,... 64 8e-08
4gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome 64 8e-08
5dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete ... 64 8e-08
6dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome 64 8e-08
7ref|XM_465411.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-05
8ref|NM_195972.1| Oryza sativa (japonica cultivar-group) putative... 56 2e-05
9gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar N... 56 2e-05
10gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA... 56 2e-05
11gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-1... 56 2e-05
12gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome... 56 2e-05
13gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome... 56 2e-05
14emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chlor... 56 2e-05
15emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4,... 56 2e-05
16gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome... 56 2e-05
17gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar N... 56 2e-05
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
20dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
22dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
23dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
24dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
25gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 56 2e-05
26dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome 56 2e-05
27ref|XM_475050.1| Oryza sativa (japonica cultivar-group), predic... 46 0.018
28ref|XM_418247.1| PREDICTED: Gallus gallus similar to KIAA0561 pr... 40 1.1
29ref|XM_544521.1| PREDICTED: Canis familiaris similar to UBX doma... 40 1.1
30ref|XM_685662.1| PREDICTED: Danio rerio similar to patched domai... 40 1.1
31ref|XM_685239.1| PREDICTED: Danio rerio similar to patched domai... 40 1.1
32ref|XM_574380.1| PREDICTED: Rattus norvegicus poliovirus recepto... 40 1.1
33gb|BC090075.1| Rattus norvegicus poliovirus receptor-related 2 (... 40 1.1
34ref|NM_001012064.1| Rattus norvegicus poliovirus receptor-relate... 40 1.1
35emb|BX004887.2| Zebrafish DNA sequence from clone CH211-150E4, c... 40 1.1
36ref|XM_426245.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 38 4.4
37gb|DQ069648.1| Yucca schidigera photosystem II 44 kDa protein (p... 38 4.4
38gb|DQ069643.1| Acorus americanus photosystem II 44 kDa protein (... 38 4.4
39gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, comp... 38 4.4
40gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast... 38 4.4
41emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA 38 4.4
42emb|X01647.1|CHMPTRN Marchantia polymorpha chloroplast DNA for t... 38 4.4
43emb|AJ627251.1| Nymphaea alba chloroplast, complete genome 38 4.4
44emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomi... 38 4.4
45gb|AC078789.16| Homo sapiens 12 BAC RP11-769N19 (Roswell Park Ca... 38 4.4
46emb|AJ879453.1| Acorus calamus chloroplast, complete genome 38 4.4
47dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome 38 4.4
48emb|AL772159.12| Mouse DNA sequence from clone RP23-107H15 on ch... 38 4.4
49gb|AC078872.13| Homo sapiens 12q BAC RP11-542G14 (Roswell Park C... 38 4.4 
>emb|X13366.1|CHSCPSBD Secale cereale chloroplast psbD, psbC and trnS genes for D2
            polypeptide, Chl a-binding protein and tRNA-Ser(uga)
          Length = 2992

 Score = 79.8 bits (40), Expect = 1e-12
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 2    aaaacctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
            ||||||||||||||||||||||||||||||||| |||| ||  |||||||||
Sbjct: 2670 aaaacctgctgcagcagctcgggctcttcctgcatgccataaatggcccaca 2619
to top
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome
          Length = 140384

 Score = 63.9 bits (32), Expect = 8e-08
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 6     cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             ||||||||||||||||||||||||||||| ||||  |  |||||||||
Sbjct: 11452 cctgctgcagcagctcgggctcttcctgcatgccacaaatggcccaca 11405
to top
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome
          Length = 141182

 Score = 63.9 bits (32), Expect = 8e-08
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 6     cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             ||||||||||||||||||||||||||||| ||||  |  |||||||||
Sbjct: 73421 cctgctgcagcagctcgggctcttcctgcatgccacaaatggcccaca 73374
to top
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome
          Length = 140454

 Score = 63.9 bits (32), Expect = 8e-08
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 6     cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             ||||||||||||||||||||||||||||| ||||  |  |||||||||
Sbjct: 11446 cctgctgcagcagctcgggctcttcctgcatgccacaaatggcccaca 11399
to top
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome
          Length = 141182

 Score = 63.9 bits (32), Expect = 8e-08
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 6     cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             ||||||||||||||||||||||||||||| ||||  |  |||||||||
Sbjct: 11794 cctgctgcagcagctcgggctcttcctgcatgccacaaatggcccaca 11747
to top
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome
          Length = 134545

 Score = 63.9 bits (32), Expect = 8e-08
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                 
Query: 2     aaaacctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             |||||||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 11368 aaaacctgctgcagcagcccgggctcttcctgcatgccaaaaatggcccaca 11317
to top
>ref|XM_465411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1422

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 6    cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
            |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 1361 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 1314
to top
>ref|NM_195972.1| Oryza sativa (japonica cultivar-group) putative PSII 43kDa protein
            from chromosome 10 chloroplast insertion
            (OSJNBb0075K12.22), mRNA
          Length = 1422

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 6    cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
            |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 1361 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 1314
to top
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast,
             complete genome
          Length = 134551

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 6     cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 11271 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 11224
to top
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast,
             complete genome
          Length = 134551

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 6     cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 11271 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 11224
to top
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast,
             complete genome
          Length = 134496

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 6     cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 11208 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 11161
to top
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0034M22, complete sequence
          Length = 149435

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 6      cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
              |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 142299 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 142252
to top
>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone
            P0508G08, complete sequence
          Length = 141383

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 6    cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
            |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 5386 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 5339
to top
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome
          Length = 134525

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 6     cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 11269 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 11222
to top
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08,
             complete sequence
          Length = 145980

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 6     cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 94618 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 94571
to top
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNAb0075K12, complete sequence
          Length = 125936

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 6    cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
            |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 9493 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 9446
to top
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from
             chromosome 10, complete sequence
          Length = 134933

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 6     cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 84426 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 84379
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                               
Query: 6       cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
               |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 9240497 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 9240450



 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                               
Query: 6       cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
               |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 9136592 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 9136545
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 6        cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
                |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 10303101 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 10303054
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 6        cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
                |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 12844840 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 12844793
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                                
Query: 6        cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
                |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 14385049 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 14385096
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 6        cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
                |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 33563286 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 33563239
to top
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0557A01
          Length = 147201

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 6      cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
              |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 108483 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 108436
to top
>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0022A24
          Length = 148347

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 6      cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
              |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 106971 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 107018
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 6        cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
                |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 10309140 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 10309093
to top
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome
          Length = 134494

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 6     cctgctgcagcagctcgggctcttcctgcntgccntanntggcccaca 53
             |||||||||||||| |||||||||||||| ||||  |  |||||||||
Sbjct: 11206 cctgctgcagcagcccgggctcttcctgcatgccacaaatggcccaca 11159
to top
>ref|XM_475050.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 6   cctgctgcagcagctcgggctcttcct 32
           |||||||||||||| ||||||||||||
Sbjct: 893 cctgctgcagcagcccgggctcttcct 867
to top
>ref|XM_418247.1| PREDICTED: Gallus gallus similar to KIAA0561 protein (LOC420130),
            mRNA
          Length = 15318

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   tgcagcagctcgggctcttc 30
            ||||||||||||||||||||
Sbjct: 3744 tgcagcagctcgggctcttc 3725
to top
>ref|XM_544521.1| PREDICTED: Canis familiaris similar to UBX domain containing 3
           (LOC487395), mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   acctgctgcagcagctcggg 24
           ||||||||||||||||||||
Sbjct: 320 acctgctgcagcagctcggg 301
to top
>ref|XM_685662.1| PREDICTED: Danio rerio similar to patched domain containing 1
            (LOC562268), mRNA
          Length = 2664

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    ctgctgcagcagctcgggct 26
            ||||||||||||||||||||
Sbjct: 1356 ctgctgcagcagctcgggct 1337
to top
>ref|XM_685239.1| PREDICTED: Danio rerio similar to patched domain containing 1
            (LOC561839), mRNA
          Length = 4662

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    ctgctgcagcagctcgggct 26
            ||||||||||||||||||||
Sbjct: 3354 ctgctgcagcagctcgggct 3335
to top
>ref|XM_574380.1| PREDICTED: Rattus norvegicus poliovirus receptor-related 2
            (herpesvirus entry mediator B) (predicted)
            (Pvrl2_predicted), mRNA
          Length = 3197

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   gcagcagctcgggctcttcc 31
            ||||||||||||||||||||
Sbjct: 1057 gcagcagctcgggctcttcc 1038
to top
>gb|BC090075.1| Rattus norvegicus poliovirus receptor-related 2 (herpesvirus entry
           mediator B), mRNA (cDNA clone MGC:94554 IMAGE:7189358),
           complete cds
          Length = 2681

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  gcagcagctcgggctcttcc 31
           ||||||||||||||||||||
Sbjct: 939 gcagcagctcgggctcttcc 920
to top
>ref|NM_001012064.1| Rattus norvegicus poliovirus receptor-related 2 (herpesvirus entry
           mediator B) (Pvrl2), mRNA
          Length = 2681

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  gcagcagctcgggctcttcc 31
           ||||||||||||||||||||
Sbjct: 939 gcagcagctcgggctcttcc 920
to top
>emb|BX004887.2| Zebrafish DNA sequence from clone CH211-150E4, complete sequence
          Length = 186834

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      ctgctgcagcagctcgggct 26
              ||||||||||||||||||||
Sbjct: 153635 ctgctgcagcagctcgggct 153616
to top
>ref|XM_426245.1| PREDICTED: Gallus gallus similar to RIKEN cDNA B930011H20 gene
            (LOC428687), mRNA
          Length = 4911

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 9    gctgcagcagctcgggctc 27
            |||||||||||||||||||
Sbjct: 4870 gctgcagcagctcgggctc 4852
to top
>gb|DQ069648.1| Yucca schidigera photosystem II 44 kDa protein (psbC) gene, partial
            cds; chloroplast
          Length = 1419

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                              
Query: 6    cctgctgcagcagctcgggctcttcctgcntgcc 39
            ||||| ||||| || |||||||||||||| ||||
Sbjct: 1361 cctgcagcagctgcacgggctcttcctgcatgcc 1328
to top
>gb|DQ069643.1| Acorus americanus photosystem II 44 kDa protein (psbC) gene, partial
            cds; chloroplast
          Length = 1383

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                              
Query: 6    cctgctgcagcagctcgggctcttcctgcntgcc 39
            |||||||| || || |||||||||||||| ||||
Sbjct: 1325 cctgctgccgctgcgcgggctcttcctgcgtgcc 1292
to top
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome
          Length = 152772

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                               
Query: 6     cctgctgcagcagctcgggctcttcctgcntgcc 39
             ||||||||||| || || ||||||||||| ||||
Sbjct: 34826 cctgctgcagctgcacgagctcttcctgcgtgcc 34793
to top
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome
          Length = 151104

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                               
Query: 6     cctgctgcagcagctcgggctcttcctgcntgcc 39
             ||||||||||| || || ||||||||||| ||||
Sbjct: 34865 cctgctgcagctgcacgagctcttcctgcgtgcc 34832
to top
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA
          Length = 121024

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 33/38 (86%)
 Strand = Plus / Minus

                                                   
Query: 2     aaaacctgctgcagcagctcgggctcttcctgcntgcc 39
             |||||| ||||||||||| || |||||||| || ||||
Sbjct: 41228 aaaaccagctgcagcagcacgtgctcttccagcatgcc 41191
to top
>emb|X01647.1|CHMPTRN Marchantia polymorpha chloroplast DNA for tRNA-Ser(UGA),
            tRNA-Gly(GCC), tRNA-Met(CAU), ORF701, ORF702 and ORF703
          Length = 3381

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 33/38 (86%)
 Strand = Plus / Minus

                                                  
Query: 2    aaaacctgctgcagcagctcgggctcttcctgcntgcc 39
            |||||| ||||||||||| || |||||||| || ||||
Sbjct: 1450 aaaaccagctgcagcagcacgtgctcttccagcatgcc 1413
to top
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome
          Length = 159930

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 33/38 (86%)
 Strand = Plus / Minus

                                                   
Query: 2     aaaacctgctgcagcagctcgggctcttcctgcntgcc 39
             ||||||||||||||| || ||||| ||||| || ||||
Sbjct: 38732 aaaacctgctgcagctgcacgggcccttcccgcatgcc 38695
to top
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence
          Length = 162686

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                               
Query: 6     cctgctgcagcagctcgggctcttcctgcntgcc 39
             ||||||||||| || ||||| |||||||| ||||
Sbjct: 40197 cctgctgcagctgcacgggcccttcctgcatgcc 40164
to top
>gb|AC078789.16| Homo sapiens 12 BAC RP11-769N19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 197554

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 1      aaaaacctgctgcagcagctcgg 23
              |||||||| ||||||||||||||
Sbjct: 128016 aaaaacctcctgcagcagctcgg 127994
to top
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome
          Length = 153821

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                               
Query: 6     cctgctgcagcagctcgggctcttcctgcntgcc 39
             |||||||| || || |||||||||||||| ||||
Sbjct: 35688 cctgctgccgctgcgcgggctcttcctgcgtgcc 35655
to top
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome
          Length = 152765

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                               
Query: 6     cctgctgcagcagctcgggctcttcctgcntgcc 39
             ||||||||||| || || ||||||||||| ||||
Sbjct: 34825 cctgctgcagctgcacgagctcttcctgcgtgcc 34792
to top
>emb|AL772159.12| Mouse DNA sequence from clone RP23-107H15 on chromosome 2, complete
              sequence
          Length = 188816

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      aaaaacctgctgcagcagc 19
              |||||||||||||||||||
Sbjct: 147043 aaaaacctgctgcagcagc 147061
to top
>gb|AC078872.13| Homo sapiens 12q BAC RP11-542G14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 166585

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 1     aaaaacctgctgcagcagctcgg 23
             |||||||| ||||||||||||||
Sbjct: 10095 aaaaacctcctgcagcagctcgg 10073


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 353,286
Number of Sequences: 3902068
Number of extensions: 353286
Number of successful extensions: 32767
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32669
Number of HSP's gapped (non-prelim): 98
length of query: 100
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 79
effective length of database: 17,151,101,840
effective search space: 1354937045360
effective search space used: 1354937045360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top