>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                           
Query: 435     acagcatcaggccctgagtttgaatcattgtgtttcaganacatgcttgcaaattgtgaa 494
               ||||||||| |||||||||| | |||   |||||| ||| ||||| |||||||||| |||
Sbjct: 4858117 acagcatcacgccctgagttgggatcgccgtgttttagagacatgtttgcaaattgcgaa 4858058

                                       
Query: 495     tcgaggtctctgctgttactacga 518
               ||||||||||||||||||||||||
Sbjct: 4858057 tcgaggtctctgctgttactacga 4858034

>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                         
Query: 435   acagcatcaggccctgagtttgaatcattgtgtttcaganacatgcttgcaaattgtgaa 494
             ||||||||| |||||||||| | |||   |||||| ||| ||||| |||||||||| |||
Sbjct: 80305 acagcatcacgccctgagttgggatcgccgtgttttagagacatgtttgcaaattgcgaa 80364

                                     
Query: 495   tcgaggtctctgctgttactacga 518
             ||||||||||||||||||||||||
Sbjct: 80365 tcgaggtctctgctgttactacga 80388

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                           
Query: 435     acagcatcaggccctgagtttgaatcattgtgtttcaganacatgcttgcaaattgtgaa 494
               ||||||||| |||||||||| | |||   |||||| ||| ||||| |||||||||| |||
Sbjct: 4858099 acagcatcacgccctgagttgggatcgccgtgttttagagacatgtttgcaaattgcgaa 4858040

                                       
Query: 495     tcgaggtctctgctgttactacga 518
               ||||||||||||||||||||||||
Sbjct: 4858039 tcgaggtctctgctgttactacga 4858016

>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                          
Query: 435    acagcatcaggccctgagtttgaatcattgtgtttcaganacatgcttgcaaattgtgaa 494
              ||||||||| |||||||||| | |||   |||||| ||| ||||| |||||||||| |||
Sbjct: 101842 acagcatcacgccctgagttgggatcgccgtgttttagagacatgtttgcaaattgcgaa 101901

                                      
Query: 495    tcgaggtctctgctgttactacga 518
              ||||||||||||||||||||||||
Sbjct: 101902 tcgaggtctctgctgttactacga 101925

>gb|AY105123.1| Zea mays PCO091259 mRNA sequence
          Length = 921

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 458 atcattgtgtttcaganacatgcttgcaaattgtgaatcgaggtctctgctgttact 514
           |||| ||||||||||| ||| | |||||||||| ||||| |||||||| ||||||||
Sbjct: 655 atcactgtgtttcagagacaggtttgcaaattgcgaatccaggtctctactgttact 599

>gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09,
              complete sequence
          Length = 135363

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                   
Query: 462    ttgtgtttcaganacatgcttgcaaattgtgaatcgaggtctctgctgttact 514
              |||||||||||| |||   | ||||| |||||||| |||||||||||||||||
Sbjct: 124323 ttgtgtttcagagacagattagcaaactgtgaatccaggtctctgctgttact 124271

>gb|AC137989.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0050G15, complete sequence
          Length = 152556

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 462   ttgtgtttcaganacatgcttgcaaattgtgaatcgaggtctctgctgttact 514
             |||||||||||| |||   | ||||| |||||||| |||||||||||||||||
Sbjct: 10230 ttgtgtttcagagacagattagcaaactgtgaatccaggtctctgctgttact 10178

>emb|AJ457803.1|OSA457803 Oryza sativa (japonica cultivar-group) partial mRNA for putative
           bZIP protein (bzip gene)
          Length = 690

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 462 ttgtgtttcaganacatgcttgcaaattgtgaatcgaggtctctgctgttact 514
           |||||||||||| |||   | ||||| |||||||| |||||||||||||||||
Sbjct: 124 ttgtgtttcagagacagattagcaaactgtgaatccaggtctctgctgttact 72

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                    
Query: 462     ttgtgtttcaganacatgcttgcaaattgtgaatcgaggtctctgctgttact 514
               |||||||||||| |||   | ||||| |||||||| |||||||||||||||||
Sbjct: 6068240 ttgtgtttcagagacagattagcaaactgtgaatccaggtctctgctgttact 6068188

>dbj|AK072267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I18, full
            insert sequence
          Length = 1822

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 462  ttgtgtttcaganacatgcttgcaaattgtgaatcgaggtctctgctgttact 514
            |||||||||||| |||   | ||||| |||||||| |||||||||||||||||
Sbjct: 1268 ttgtgtttcagagacagattagcaaactgtgaatccaggtctctgctgttact 1216

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                    
Query: 462     ttgtgtttcaganacatgcttgcaaattgtgaatcgaggtctctgctgttact 514
               |||||||||||| |||   | ||||| |||||||| |||||||||||||||||
Sbjct: 6134707 ttgtgtttcagagacagattagcaaactgtgaatccaggtctctgctgttact 6134655

>emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in linkage group 5, complete
              sequence
          Length = 204925

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 454    ttgaatcattgtgtttcaganacatgcttgcaaattgt 491
              |||||||||||||||||||| | || ||||||| ||||
Sbjct: 172155 ttgaatcattgtgtttcagacatatacttgcaatttgt 172192

>emb|AL954678.8| Zebrafish DNA sequence from clone CH211-207E14 in linkage group 9,
              complete sequence
          Length = 219500

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 454    ttgaatcattgtgtttcaganacatgcttgcaa 486
              |||||| ||||||||| ||| ||||||||||||
Sbjct: 133028 ttgaattattgtgtttgagacacatgcttgcaa 132996

>gb|AC131105.4| Mus musculus BAC clone RP23-280N9 from chromosome 19, complete
            sequence
          Length = 225527

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 435  acagcatcaggccctgagtttgaat 459
            |||| ||||||||||||||||||||
Sbjct: 3991 acagaatcaggccctgagtttgaat 4015

>gb|AC132957.3| Mus musculus BAC clone RP23-149E9 from chromosome 19, complete sequence
          Length = 246177

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 435   acagcatcaggccctgagtttgaat 459
             |||| ||||||||||||||||||||
Sbjct: 51615 acagaatcaggccctgagtttgaat 51591

>emb|BX470159.8| Zebrafish DNA sequence from clone DKEY-34H12, complete sequence
          Length = 210284

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 454   ttgaatcattgtgtttcaganacatgcttgca 485
             |||||| ||||||||| ||| |||||||||||
Sbjct: 74762 ttgaattattgtgtttaagacacatgcttgca 74793

>gb|AC093722.2| Homo sapiens BAC clone CTD-2012I17 from 4, complete sequence
          Length = 163353

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   attccaaaataaaatgaacat 256
             |||||||||||||||||||||
Sbjct: 55987 attccaaaataaaatgaacat 56007

>gb|AF488416.1| Zea mays chromosome 9 BAC 9C20 complete sequence
          Length = 143300

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   ccattattacctttccggcattat 285
             ||||||||||||||| ||||||||
Sbjct: 50236 ccattattacctttctggcattat 50213



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   ccattattacctttccggcattat 285
             ||||||||||||||| ||||||||
Sbjct: 40153 ccattattacctttctggcattat 40130

>gb|AC141583.3| Rattus norvegicus 9 BAC CH230-486H15 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 132946

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 437   agcatcaggccctgagtttgaatc 460
             ||||||||| ||||||||||||||
Sbjct: 42626 agcatcaggacctgagtttgaatc 42603

>gb|AC110268.17| Mus musculus chromosome 1, clone RP23-320I7, complete sequence
          Length = 185246

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 437  agcatcaggccctgagtttg 456
            ||||||||||||||||||||
Sbjct: 4653 agcatcaggccctgagtttg 4672

>gb|AY277973.1| Takifugu rubripes transcription factor Sox5 (Sox5) gene, complete cds
          Length = 61929

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   aaaataaaatgaacatcaga 260
             ||||||||||||||||||||
Sbjct: 39190 aaaataaaatgaacatcaga 39171

>gb|AC107179.5| Rattus norvegicus 9 BAC CH230-155P21 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 204235

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 437    agcatcaggccctgagtttgaatc 460
              ||||||||| ||||||||||||||
Sbjct: 169294 agcatcaggacctgagtttgaatc 169271

>gb|AC134535.4| Mus musculus BAC clone RP24-371E20 from chromosome 7, complete sequence
          Length = 214571

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    atgaacatcagatccattat 268
              ||||||||||||||||||||
Sbjct: 167787 atgaacatcagatccattat 167768

>gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, complete sequence
          Length = 212273

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    aactaacaagaaatgcaacactaa 104
             ||||||||||||| ||||||||||
Sbjct: 61377 aactaacaagaaaagcaacactaa 61354

>gb|AC139154.3| Mus musculus chromosome 7 clone RP24-356B8, complete sequence
          Length = 164774

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   atgaacatcagatccattat 268
             ||||||||||||||||||||
Sbjct: 45329 atgaacatcagatccattat 45310

>gb|AC144618.7| Medicago truncatula clone mth2-21d12, complete sequence
          Length = 106554

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 94    tgcaacactaaatgaatgaattac 117
             |||||||| |||||||||||||||
Sbjct: 38979 tgcaacacgaaatgaatgaattac 38956

>emb|Z86061.1|HS117P19 Human DNA sequence from clone RP1-117P19 on chromosome Xq21.1-21.33
             Contains the gene for replication protein A complex 34 kd
             subunit homolog Rpa4 (HSU24186) and part of the DIAPH2
             gene for diaphanous homolog 2 (Drosophila), complete
             sequence
          Length = 117911

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   aaataaaatgaacatcagat 261
             ||||||||||||||||||||
Sbjct: 41693 aaataaaatgaacatcagat 41674

>emb|AL390763.13| Human DNA sequence from clone RP11-264E18 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 162044

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   atgaacatcagatccattat 268
             ||||||||||||||||||||
Sbjct: 54205 atgaacatcagatccattat 54186

>emb|AL354896.16| Human DNA sequence from clone RP11-512M17 on chromosome 13, complete
             sequence
          Length = 209743

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   aaattccaaaataaaatgaa 253
             ||||||||||||||||||||
Sbjct: 48553 aaattccaaaataaaatgaa 48572

>gb|AC119739.5| Homo sapiens 3 BAC RP11-676G20 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 29158

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   aacactaaatgaatgaatta 116
            ||||||||||||||||||||
Sbjct: 6689 aacactaaatgaatgaatta 6708

>gb|AC020907.6| Homo sapiens chromosome 19 clone CTD-2527I21, complete sequence
          Length = 169891

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   aataaaatgaacatcagatc 262
             ||||||||||||||||||||
Sbjct: 40977 aataaaatgaacatcagatc 40958

>gb|AC140038.13| Mus musculus chromosome 1, clone RP24-290D14, complete sequence
          Length = 171967

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 437   agcatcaggccctgagtttg 456
             ||||||||||||||||||||
Sbjct: 86561 agcatcaggccctgagtttg 86580

>gb|AC114920.7| Mus musculus BAC clone RP23-197N18 from 8, complete sequence
          Length = 195042

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 436   cagcatcaggccctgagtttgaat 459
             |||||||||| |||||||||||||
Sbjct: 91374 cagcatcaggacctgagtttgaat 91397

>gb|AC149062.3| Mus musculus BAC clone RP23-183E20 from 7, complete sequence
          Length = 229956

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    atgaacatcagatccattat 268
              ||||||||||||||||||||
Sbjct: 218132 atgaacatcagatccattat 218151

>emb|AL627103.13| Mouse DNA sequence from clone RP23-414M10 on chromosome 4, complete
             sequence
          Length = 194995

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   aggtgcaaattccaaaataa 247
             ||||||||||||||||||||
Sbjct: 44872 aggtgcaaattccaaaataa 44891


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,191,521
Number of Sequences: 3902068
Number of extensions: 4191521
Number of successful extensions: 79437
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79301
Number of HSP's gapped (non-prelim): 136
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)