ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23p23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCBX_ECOLI (P75863) Hypothetical protein ycbX 96 1e-19
2COGT1_ARATH (Q9ZQ99) Cytokinin-O-glucosyltransferase 1 (EC 2.4.1... 32 1.4
3RS4E_METVA (P14023) 30S ribosomal protein S4e 32 1.9
4TSA4_GIALA (P21849) Major surface-labeled trophozoite antigen 41... 31 3.2
5TS11_GIALA (Q03185) Major surface trophozoite antigen 11 precursor 30 5.4
6NUOF_BUCAP (Q8K9Y3) NADH-quinone oxidoreductase chain F (EC 1.6.... 30 5.4
7CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alph... 30 7.1
8DHE4_UNKP (P14657) NADP-specific glutamate dehydrogenase (EC 1.4... 30 9.3

>YCBX_ECOLI (P75863) Hypothetical protein ycbX|
          Length = 369

 Score = 95.5 bits (236), Expect = 1e-19
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 8/185 (4%)
 Frame = -1

Query: 673 EWLSAYFGKPSRLVRFKEESEIRPTNPEYAQGYK------LTFTDCFPFLIASQGSLDAL 512
           +WLS +F +         E ++R   P+  +  K      L+F D +P+L+A++ SL  L
Sbjct: 108 KWLSGFFSR---------EVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDL 158

Query: 511 NELLKEPVPINRFRPNILVDGCHPYAEDLWKTIKIDKLTFDGVKLCDRCKVPTVNQENGI 332
            +     V + +FRPN++V G   + ED WK I+I  + FD VK C RC   TV+ E G 
Sbjct: 159 QQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQ 218

Query: 331 L--GTEPTETMLTFRSGEVLRPSHKNKQKVYFGQNLVCKESVSAKGKGRIVKVGDPVYVL 158
                EP +T+ +FR+ +       +   V FGQNL+ + S        +++VGD V +L
Sbjct: 219 KHPAGEPLKTLQSFRTAQ-------DNGDVDFGQNLIARNS-------GVIRVGDEVEIL 264

Query: 157 QTYPS 143
            T P+
Sbjct: 265 ATAPA 269



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>COGT1_ARATH (Q9ZQ99) Cytokinin-O-glucosyltransferase 1 (EC 2.4.1.-) (Zeatin|
           O-glucosyltransferase 1) (AtZOG1)
          Length = 491

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
 Frame = -1

Query: 652 GKPSRLVRFKEESEIRPTNPEYAQ--------GYKLTFTDCFPFLIASQGSLDALNELLK 497
           G P  LV+ K  S+    +PE  +        G  LTF   F  L       + + +LLK
Sbjct: 62  GLPINLVQVKFPSQ-ESGSPEGQENLDLLDSLGASLTFFKAFSLLE------EPVEKLLK 114

Query: 496 EPVPINRFRPN-ILVDGCHPYAEDLWKTIKIDKLTFDGV 383
           E  P    RPN I+ D C PY   + K + I K+ F G+
Sbjct: 115 EIQP----RPNCIIADMCLPYTNRIAKNLGIPKIIFHGM 149



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>RS4E_METVA (P14023) 30S ribosomal protein S4e|
          Length = 244

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
 Frame = -1

Query: 448 CHPYAEDLWKTIKIDKLTFDGVK---------LCDRCKVPTVNQ-------ENGILGTEP 317
           C   A +  K I++ K+  DGVK         L D   +P +N+       ENG +  + 
Sbjct: 55  CADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLKK 114

Query: 316 TET----MLTFRSGEVLRPSHKNKQKVYFGQNLVCKESVSAKGKGRIVKVGDPVYV 161
           TE     +    +  V++  H  +  ++ G+N + K + + K +  I K GD V V
Sbjct: 115 TEKTGVKLCKIVNKTVIKGGHI-QLNLHDGRNQIVKVANALKAEEDIYKTGDSVLV 169



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>TSA4_GIALA (P21849) Major surface-labeled trophozoite antigen 417 precursor|
          Length = 713

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 18/68 (26%), Positives = 24/68 (35%)
 Frame = -1

Query: 400 LTFDGVKLCDRCKVPTVNQENGILGTEPTETMLTFRSGEVLRPSHKNKQKVYFGQNLVCK 221
           LT DG   C  C   T   +NG+   + +    T     +           YF  N  C 
Sbjct: 478 LTIDGASYCSECATTTEYPQNGVCAPKASRATPTCNDSPIQNGVCGTCADNYFKMNGGCY 537

Query: 220 ESVSAKGK 197
           E+V   GK
Sbjct: 538 ETVKYPGK 545



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>TS11_GIALA (Q03185) Major surface trophozoite antigen 11 precursor|
          Length = 667

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 17/68 (25%), Positives = 25/68 (36%)
 Frame = -1

Query: 400 LTFDGVKLCDRCKVPTVNQENGILGTEPTETMLTFRSGEVLRPSHKNKQKVYFGQNLVCK 221
           LT DG   C  C       +NGI  +    T+ T ++  V      +    +   N  C 
Sbjct: 426 LTIDGASYCSECDTQNEYPQNGICTSTTARTVATCKNSNVANGICSSCTNGFLRMNGGCY 485

Query: 220 ESVSAKGK 197
           E+    GK
Sbjct: 486 ETTKFPGK 493



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>NUOF_BUCAP (Q8K9Y3) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain F) (NDH-1, chain F)
          Length = 447

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 180 SATRFTFFRHTLLPMKFQPERGLGSTYCICVYVCVEEMTGSVDFVCTLRKF 28
           + T F   +H  LPM F      GS     + + V+  T  +  VC + KF
Sbjct: 296 AGTDFLIEKHLDLPMDFTSIAKAGSRLGTAIAMAVDNKTNMISLVCNIEKF 346



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>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 414  MVFHRSSA*GWHPSTKIFGLKRLIGTGSLRSSFSASSEP 530
            ++ H ++    HP +   G+   +G+GS R+S S S+EP
Sbjct: 1017 LIIHTAATPMSHPKSSSTGVGEALGSGSRRTSSSGSAEP 1055



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>DHE4_UNKP (P14657) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)|
           (NADP-GDH)
          Length = 446

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 604 PTNPEYAQGYKLTFTDCFPFLIASQGSLD-ALNELLKEPVPINRFR 470
           P  PEY Q  +  FT  +PF+  +    + AL E L EP  I +FR
Sbjct: 19  PHQPEYLQAVREVFTSLWPFIERNPAYREQALLERLVEPERIIQFR 64


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,963,888
Number of Sequences: 219361
Number of extensions: 2283660
Number of successful extensions: 5954
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5954
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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