ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23p22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4,... 76 4e-11
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 76 4e-11
3ref|XM_541619.2| PREDICTED: Canis familiaris similar to Fc fragm... 42 0.57
4emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment ... 40 2.3
5emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right termin... 40 2.3
6emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left termina... 40 2.3
7gb|AC153806.1| Homo sapiens chromosome 1 clone fa0649, complete ... 38 8.9
8gb|AY601813.1| Plutella xylostella insecticidal Bt toxin recepto... 38 8.9
9gb|AY573579.1| Plutella xylostella aminopeptidase N2 mRNA, compl... 38 8.9
10gb|AY564236.1| Plutella xylostella aminopeptidase N2 mRNA, compl... 38 8.9
11gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 38 8.9
12emb|AL929472.21| Human DNA sequence from clone RP11-109P14 on ch... 38 8.9
13gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 38 8.9
14emb|CR378667.1| Photobacterium profundum SS9; segment 5/12 38 8.9
15emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, stra... 38 8.9
16gb|AC010031.8| Drosophila melanogaster 3L BAC RP98-2M20 (Roswell... 38 8.9
17gb|AC104336.2| Homo sapiens chromosome 1 clone RP4-783C10, compl... 38 8.9
18gb|AC009539.6|AC009539 Drosophila melanogaster, chromosome 3R, r... 38 8.9
19emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 38 8.9
20gb|AE003678.3| Drosophila melanogaster chromosome 3R, section 16... 38 8.9
21gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49... 38 8.9
22gb|BT001827.1| Drosophila melanogaster RH44168 full insert cDNA 38 8.9
23emb|AJ222699.1|PXY222699 Plutella xylostella mRNA for aminopepti... 38 8.9
24dbj|AP000355.1| Homo sapiens genomic DNA, chromosome 22q11.2, cl... 38 8.9

>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
              complete sequence
          Length = 188317

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                          
Query: 45     gcgctcgcgcctgagccgntcctgcaccctcgatatgtacaaggcagcncggcggtcaac 104
              |||||||||||| ||||| |||||||||||||| |||||||  || || |||||||| ||
Sbjct: 108069 gcgctcgcgcctcagccgctcctgcaccctcgagatgtacatcgccgcgcggcggtccac 108128

                          
Query: 105    gtcagcgtcgcc 116
              ||| ||||||||
Sbjct: 108129 gtcggcgtcgcc 108140



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                            
Query: 45       gcgctcgcgcctgagccgntcctgcaccctcgatatgtacaaggcagcncggcggtcaac 104
                |||||||||||| ||||| |||||||||||||| |||||||  || || |||||||| ||
Sbjct: 19016144 gcgctcgcgcctcagccgctcctgcaccctcgagatgtacatcgccgcgcggcggtccac 19016203

                            
Query: 105      gtcagcgtcgcc 116
                ||| ||||||||
Sbjct: 19016204 gtcggcgtcgcc 19016215



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>ref|XM_541619.2| PREDICTED: Canis familiaris similar to Fc fragment of IgG binding
           protein (LOC484505), mRNA
          Length = 3636

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 155 ccacctgcacggtgatcaccc 175
           |||||||||||||||||||||
Sbjct: 574 ccacctgcacggtgatcaccc 554



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>emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment 19/24
          Length = 295650

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     aaagctggcaatcagcagca 39
              ||||||||||||||||||||
Sbjct: 224304 aaagctggcaatcagcagca 224323



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>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat
          Length = 243019

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    cacctgcacggtgatcaccc 175
              ||||||||||||||||||||
Sbjct: 101215 cacctgcacggtgatcaccc 101234



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>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat
          Length = 273746

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    cacctgcacggtgatcaccc 175
              ||||||||||||||||||||
Sbjct: 101215 cacctgcacggtgatcaccc 101234



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>gb|AC153806.1| Homo sapiens chromosome 1 clone fa0649, complete sequence
          Length = 35984

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 144   gccaggcgccaccacctgc 162
             |||||||||||||||||||
Sbjct: 31464 gccaggcgccaccacctgc 31446



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>gb|AY601813.1| Plutella xylostella insecticidal Bt toxin receptor APN2 mRNA,
            complete cds
          Length = 2975

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 21   aagctggcaatcagcagca 39
            |||||||||||||||||||
Sbjct: 2843 aagctggcaatcagcagca 2825



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>gb|AY573579.1| Plutella xylostella aminopeptidase N2 mRNA, complete cds
          Length = 2965

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 21   aagctggcaatcagcagca 39
            |||||||||||||||||||
Sbjct: 2843 aagctggcaatcagcagca 2825



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>gb|AY564236.1| Plutella xylostella aminopeptidase N2 mRNA, complete cds
          Length = 2956

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 21   aagctggcaatcagcagca 39
            |||||||||||||||||||
Sbjct: 2843 aagctggcaatcagcagca 2825



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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 151     gccaccacctgcacggtga 169
               |||||||||||||||||||
Sbjct: 1663351 gccaccacctgcacggtga 1663333



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>emb|AL929472.21| Human DNA sequence from clone RP11-109P14 on chromosome 1 Contains a
             pseudogene similar to part of actinin alpha4 (ACTN4), a
             novel pseudogene, two genes for novel proteins (FLJ31434,
             FLJ45459), the gene for ischemia/reperfusion inducible
             protein (FLJ23476), the MTF1 gene for metal-regulatory
             transcription factor 1, a ribosomal protein S2 (RPS2)
             pseudogene, the 3' end of the INPP5B gene for 75kDa
             nositol polyphosphate-5-phosphatase, two novel genes and
             four CpG islands, complete sequence
          Length = 143060

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 144   gccaggcgccaccacctgc 162
             |||||||||||||||||||
Sbjct: 22570 gccaggcgccaccacctgc 22588



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 97     cggtcaacgtcagcgtcgc 115
              |||||||||||||||||||
Sbjct: 693423 cggtcaacgtcagcgtcgc 693405



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>emb|CR378667.1| Photobacterium profundum SS9; segment 5/12
          Length = 349080

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      aacaagatcgaaaagctgg 27
              |||||||||||||||||||
Sbjct: 210945 aacaagatcgaaaagctgg 210927



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>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11
          Length = 349723

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 94    cggcggtcaacgtcagcgt 112
             |||||||||||||||||||
Sbjct: 58423 cggcggtcaacgtcagcgt 58405



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>gb|AC010031.8| Drosophila melanogaster 3L BAC RP98-2M20 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 173509

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     atcgaaaagctggcaatca 33
              |||||||||||||||||||
Sbjct: 119428 atcgaaaagctggcaatca 119410



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>gb|AC104336.2| Homo sapiens chromosome 1 clone RP4-783C10, complete sequence
          Length = 134161

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 144    gccaggcgccaccacctgc 162
              |||||||||||||||||||
Sbjct: 114476 gccaggcgccaccacctgc 114494



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>gb|AC009539.6|AC009539 Drosophila melanogaster, chromosome 3R, region 85A-85A, BAC clone
              BACR33N15, complete sequence
          Length = 187701

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 136    ttgctgttgccaggcgcca 154
              |||||||||||||||||||
Sbjct: 106740 ttgctgttgccaggcgcca 106722



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 156     cacctgcacggtgatcacc 174
               |||||||||||||||||||
Sbjct: 3400019 cacctgcacggtgatcacc 3400037



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>gb|AE003678.3| Drosophila melanogaster chromosome 3R, section 16 of 118 of the complete
              sequence
          Length = 244757

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 136    ttgctgttgccaggcgcca 154
              |||||||||||||||||||
Sbjct: 155141 ttgctgttgccaggcgcca 155159



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>gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49 of 83 of the complete
              sequence
          Length = 350428

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     atcgaaaagctggcaatca 33
              |||||||||||||||||||
Sbjct: 140692 atcgaaaagctggcaatca 140710



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>gb|BT001827.1| Drosophila melanogaster RH44168 full insert cDNA
          Length = 2405

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 15   atcgaaaagctggcaatca 33
            |||||||||||||||||||
Sbjct: 2238 atcgaaaagctggcaatca 2220



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>emb|AJ222699.1|PXY222699 Plutella xylostella mRNA for aminopeptidase N
          Length = 2963

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 21   aagctggcaatcagcagca 39
            |||||||||||||||||||
Sbjct: 2846 aagctggcaatcagcagca 2828



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>dbj|AP000355.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1896H10
          Length = 173785

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 140   tgttgccaggcgccaccacctgc 162
             ||||||||| |||||||||||||
Sbjct: 68743 tgttgccagccgccaccacctgc 68721


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 772,889
Number of Sequences: 3902068
Number of extensions: 772889
Number of successful extensions: 52027
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51710
Number of HSP's gapped (non-prelim): 317
length of query: 181
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 159
effective length of database: 17,147,199,772
effective search space: 2726404763748
effective search space used: 2726404763748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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