Clone Name | rbasd23p22 |
---|---|
Clone Library Name | barley_pub |
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 75.8 bits (38), Expect = 4e-11 Identities = 63/72 (87%) Strand = Plus / Plus Query: 45 gcgctcgcgcctgagccgntcctgcaccctcgatatgtacaaggcagcncggcggtcaac 104 |||||||||||| ||||| |||||||||||||| ||||||| || || |||||||| || Sbjct: 108069 gcgctcgcgcctcagccgctcctgcaccctcgagatgtacatcgccgcgcggcggtccac 108128 Query: 105 gtcagcgtcgcc 116 ||| |||||||| Sbjct: 108129 gtcggcgtcgcc 108140
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 75.8 bits (38), Expect = 4e-11 Identities = 63/72 (87%) Strand = Plus / Plus Query: 45 gcgctcgcgcctgagccgntcctgcaccctcgatatgtacaaggcagcncggcggtcaac 104 |||||||||||| ||||| |||||||||||||| ||||||| || || |||||||| || Sbjct: 19016144 gcgctcgcgcctcagccgctcctgcaccctcgagatgtacatcgccgcgcggcggtccac 19016203 Query: 105 gtcagcgtcgcc 116 ||| |||||||| Sbjct: 19016204 gtcggcgtcgcc 19016215
>ref|XM_541619.2| PREDICTED: Canis familiaris similar to Fc fragment of IgG binding protein (LOC484505), mRNA Length = 3636 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 ccacctgcacggtgatcaccc 175 ||||||||||||||||||||| Sbjct: 574 ccacctgcacggtgatcaccc 554
>emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment 19/24 Length = 295650 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 aaagctggcaatcagcagca 39 |||||||||||||||||||| Sbjct: 224304 aaagctggcaatcagcagca 224323
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cacctgcacggtgatcaccc 175 |||||||||||||||||||| Sbjct: 101215 cacctgcacggtgatcaccc 101234
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cacctgcacggtgatcaccc 175 |||||||||||||||||||| Sbjct: 101215 cacctgcacggtgatcaccc 101234
>gb|AC153806.1| Homo sapiens chromosome 1 clone fa0649, complete sequence Length = 35984 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 144 gccaggcgccaccacctgc 162 ||||||||||||||||||| Sbjct: 31464 gccaggcgccaccacctgc 31446
>gb|AY601813.1| Plutella xylostella insecticidal Bt toxin receptor APN2 mRNA, complete cds Length = 2975 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 aagctggcaatcagcagca 39 ||||||||||||||||||| Sbjct: 2843 aagctggcaatcagcagca 2825
>gb|AY573579.1| Plutella xylostella aminopeptidase N2 mRNA, complete cds Length = 2965 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 aagctggcaatcagcagca 39 ||||||||||||||||||| Sbjct: 2843 aagctggcaatcagcagca 2825
>gb|AY564236.1| Plutella xylostella aminopeptidase N2 mRNA, complete cds Length = 2956 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 aagctggcaatcagcagca 39 ||||||||||||||||||| Sbjct: 2843 aagctggcaatcagcagca 2825
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 151 gccaccacctgcacggtga 169 ||||||||||||||||||| Sbjct: 1663351 gccaccacctgcacggtga 1663333
>emb|AL929472.21| Human DNA sequence from clone RP11-109P14 on chromosome 1 Contains a pseudogene similar to part of actinin alpha4 (ACTN4), a novel pseudogene, two genes for novel proteins (FLJ31434, FLJ45459), the gene for ischemia/reperfusion inducible protein (FLJ23476), the MTF1 gene for metal-regulatory transcription factor 1, a ribosomal protein S2 (RPS2) pseudogene, the 3' end of the INPP5B gene for 75kDa nositol polyphosphate-5-phosphatase, two novel genes and four CpG islands, complete sequence Length = 143060 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 144 gccaggcgccaccacctgc 162 ||||||||||||||||||| Sbjct: 22570 gccaggcgccaccacctgc 22588
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 cggtcaacgtcagcgtcgc 115 ||||||||||||||||||| Sbjct: 693423 cggtcaacgtcagcgtcgc 693405
>emb|CR378667.1| Photobacterium profundum SS9; segment 5/12 Length = 349080 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 aacaagatcgaaaagctgg 27 ||||||||||||||||||| Sbjct: 210945 aacaagatcgaaaagctgg 210927
>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11 Length = 349723 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 cggcggtcaacgtcagcgt 112 ||||||||||||||||||| Sbjct: 58423 cggcggtcaacgtcagcgt 58405
>gb|AC010031.8| Drosophila melanogaster 3L BAC RP98-2M20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 173509 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 atcgaaaagctggcaatca 33 ||||||||||||||||||| Sbjct: 119428 atcgaaaagctggcaatca 119410
>gb|AC104336.2| Homo sapiens chromosome 1 clone RP4-783C10, complete sequence Length = 134161 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 144 gccaggcgccaccacctgc 162 ||||||||||||||||||| Sbjct: 114476 gccaggcgccaccacctgc 114494
>gb|AC009539.6|AC009539 Drosophila melanogaster, chromosome 3R, region 85A-85A, BAC clone BACR33N15, complete sequence Length = 187701 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 136 ttgctgttgccaggcgcca 154 ||||||||||||||||||| Sbjct: 106740 ttgctgttgccaggcgcca 106722
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 156 cacctgcacggtgatcacc 174 ||||||||||||||||||| Sbjct: 3400019 cacctgcacggtgatcacc 3400037
>gb|AE003678.3| Drosophila melanogaster chromosome 3R, section 16 of 118 of the complete sequence Length = 244757 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 ttgctgttgccaggcgcca 154 ||||||||||||||||||| Sbjct: 155141 ttgctgttgccaggcgcca 155159
>gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49 of 83 of the complete sequence Length = 350428 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 atcgaaaagctggcaatca 33 ||||||||||||||||||| Sbjct: 140692 atcgaaaagctggcaatca 140710
>gb|BT001827.1| Drosophila melanogaster RH44168 full insert cDNA Length = 2405 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 atcgaaaagctggcaatca 33 ||||||||||||||||||| Sbjct: 2238 atcgaaaagctggcaatca 2220
>emb|AJ222699.1|PXY222699 Plutella xylostella mRNA for aminopeptidase N Length = 2963 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 aagctggcaatcagcagca 39 ||||||||||||||||||| Sbjct: 2846 aagctggcaatcagcagca 2828
>dbj|AP000355.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1896H10 Length = 173785 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 140 tgttgccaggcgccaccacctgc 162 ||||||||| ||||||||||||| Sbjct: 68743 tgttgccagccgccaccacctgc 68721 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 772,889 Number of Sequences: 3902068 Number of extensions: 772889 Number of successful extensions: 52027 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51710 Number of HSP's gapped (non-prelim): 317 length of query: 181 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 159 effective length of database: 17,147,199,772 effective search space: 2726404763748 effective search space used: 2726404763748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)