Clone Name | rbasd23p21 |
---|---|
Clone Library Name | barley_pub |
>emb|Z99120.2|BSUB0017 Bacillus subtilis complete genome (section 17 of 21): from 3213330 to 3414388 Length = 201059 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 490 tgttgtgactctgttcttaggt 511 |||||||||||||||||||||| Sbjct: 188874 tgttgtgactctgttcttaggt 188853
>emb|AJ223978.1|BS43KBDNA Bacillus subtilis 42.7kB DNA fragment from yvsA to yvqA Length = 42782 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 490 tgttgtgactctgttcttaggt 511 |||||||||||||||||||||| Sbjct: 25052 tgttgtgactctgttcttaggt 25073
>emb|AL663082.5| Mouse DNA sequence from clone RP23-327G1 on chromosome 11 Contains the 3' end of the Ankfy1 gene for ankyrin repeat and FYVE domain containing 1, a new gene, the gene for a novel ZZ type zinc finger domain containing protein, the 5' end of the Atp2a3 gene for ubiquitous Ca++ transporting ATPase and two CpG islands, complete sequence Length = 243654 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 94 atgcttgcctataggaaaatgg 115 |||||||||||||||||||||| Sbjct: 152290 atgcttgcctataggaaaatgg 152269
>emb|AL732500.7| Mouse DNA sequence from clone RP23-208J6 on chromosome 4, complete sequence Length = 178699 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 520 agaaactttatcaatcattaat 541 |||||||||||||||||||||| Sbjct: 20396 agaaactttatcaatcattaat 20375
>gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, complete sequence Length = 238598 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 tttaagctgcatatatacaca 71 ||||||||||||||||||||| Sbjct: 70886 tttaagctgcatatatacaca 70866
>gb|AC107531.8| Rattus norvegicus 1 BAC CH230-158N3 (Children's Hospital Oakland Research Institute) complete sequence Length = 173190 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 351 taggaaaactataagacaaat 371 ||||||||||||||||||||| Sbjct: 142534 taggaaaactataagacaaat 142554
>emb|AL583841.16| Human DNA sequence from clone RP11-556L2 on chromosome 9 Contains part of the ROR2 gene for receptor tyrosine kinase-like orphan receptor, complete sequence Length = 192799 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 tgcctataggaaaatggacca 119 ||||||||||||||||||||| Sbjct: 125432 tgcctataggaaaatggacca 125452
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 347 aaaataggaaaactataagac 367 ||||||||||||||||||||| Sbjct: 1374687 aaaataggaaaactataagac 1374667
>gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosome 9, complete sequence Length = 186410 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 tttaagctgcatatatacaca 71 ||||||||||||||||||||| Sbjct: 37335 tttaagctgcatatatacaca 37355
>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence Length = 124602 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 355 aaaactataagacaaataagaatga 379 ||||||| ||||||||||||||||| Sbjct: 69558 aaaactaaaagacaaataagaatga 69534
>gb|BC040286.1| Homo sapiens family with sequence similarity 19 (chemokine (C-C motif)-like), member A2, mRNA (cDNA clone IMAGE:4821701), complete cds Length = 2529 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 624 ttttagaatacaaagtattt 643 |||||||||||||||||||| Sbjct: 1866 ttttagaatacaaagtattt 1847
>gb|AC150482.2| Bos taurus BAC CH240-308E11 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 179880 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 ttatttgtcctctggcaggt 469 |||||||||||||||||||| Sbjct: 41224 ttatttgtcctctggcaggt 41243
>gb|BC050347.1| Homo sapiens TAFA2 protein, mRNA (cDNA clone IMAGE:5259052) Length = 4058 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 624 ttttagaatacaaagtattt 643 |||||||||||||||||||| Sbjct: 3405 ttttagaatacaaagtattt 3386
>ref|NM_178539.3| Homo sapiens family with sequence similarity 19 (chemokine (C-C motif)-like), member A2 (FAM19A2), mRNA Length = 4069 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 624 ttttagaatacaaagtattt 643 |||||||||||||||||||| Sbjct: 3404 ttttagaatacaaagtattt 3385
>gb|DQ116434.1| Anisakis paggiae cytochrome oxidase subunit 2 (cox2) gene, partial cds; mitochondrial Length = 629 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 taggaaaactataagacaaa 370 |||||||||||||||||||| Sbjct: 523 taggaaaactataagacaaa 504
>gb|DQ116430.1| Anisakis ziphidarum cytochrome oxidase subunit 2 (cox2) gene, partial cds; mitochondrial Length = 629 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 taggaaaactataagacaaa 370 |||||||||||||||||||| Sbjct: 523 taggaaaactataagacaaa 504
>emb|BX322800.3| Human DNA sequence from clone RP11-762K23 on chromosome 9, complete sequence Length = 15571 Score = 40.1 bits (20), Expect = 9.1 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 200 ccttgtttgcccttcagaaactgtaccacaga 231 |||||||||||||||||| |||| |||||||| Sbjct: 4931 ccttgtttgcccttcagatactg-accacaga 4961
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome Length = 1512977 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 aataagaatgagttatttat 388 |||||||||||||||||||| Sbjct: 796355 aataagaatgagttatttat 796336
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome Length = 1499920 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 aataagaatgagttatttat 388 |||||||||||||||||||| Sbjct: 792351 aataagaatgagttatttat 792332
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome Length = 1516355 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 aataagaatgagttatttat 388 |||||||||||||||||||| Sbjct: 816506 aataagaatgagttatttat 816487
>gb|BC028403.1| Homo sapiens family with sequence similarity 19 (chemokine (C-C motif)-like), member A2, mRNA (cDNA clone MGC:33519 IMAGE:4818605), complete cds Length = 3087 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 624 ttttagaatacaaagtattt 643 |||||||||||||||||||| Sbjct: 2422 ttttagaatacaaagtattt 2403
>emb|AL591382.3| Zebrafish DNA sequence from clone BUSM1-105L16 in linkage group 7 Contains the nitr2d_1 gene for novel immune-type receptor 2d, allele 1, the nitr1o_3 gene for novel immune-type receptor 1o, allele 3, the nitr1m_2 gene for novel immune-type receptor 1m, allele 2, the nitr1l_2 gene for novel immune-type receptor 1l, allele 2, a novel immune-type receptor 1 pseudogene, the nitr5_4 gene for novel immune-type receptor 5, allele 4, the nitr4a_2 gene for novel immune-type receptor 4a, allele 2, the nitr1i_2 gene for novel immune-type receptor 1i, allele 2, the nitr1j_1 gene for novel immune-type receptor 1j, allele 1, the nitr1g_1 gene for novel immune-type receptor 1g, allele 1, a novel immune-type receptor 4b pseudogene, a novel gene, the nitr1k_3 gene for novel immune-type receptor 1k, allele 3 and a CpG island, complete sequence Length = 98934 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 533 atcattaattttattagccttcca 556 |||||||||||||||||| ||||| Sbjct: 59946 atcattaattttattagcgttcca 59969
>emb|AL353818.1|ATF14L2 Arabidopsis thaliana DNA chromosome 3, BAC clone F14L2 Length = 107027 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 412 atatataaaagacttgggggattgacat 439 |||||||||||| ||| ||||||||||| Sbjct: 38303 atatataaaagaattgagggattgacat 38276
>gb|AC103559.2| Homo sapiens chromosome 3 clone RP11-286L5, complete sequence Length = 184133 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 469 tcaatggctaaggaatctctttgt 492 |||||||| ||||||||||||||| Sbjct: 173709 tcaatggcaaaggaatctctttgt 173732
>emb|CR749367.1| Homo sapiens mRNA; cDNA DKFZp781P0552 (from clone DKFZp781P0552) Length = 3316 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 624 ttttagaatacaaagtattt 643 |||||||||||||||||||| Sbjct: 2620 ttttagaatacaaagtattt 2601
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 cttaacactcattttccctt 166 |||||||||||||||||||| Sbjct: 1388545 cttaacactcattttccctt 1388526
>gb|AC060761.10| Mus musculus chromosome 17, clone RP23-218D19, complete sequence Length = 228922 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 acataacaaatagcccacaaaata 352 |||||||||| ||||||||||||| Sbjct: 221307 acataacaaacagcccacaaaata 221330
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 627 tagaatacaaagtattttgg 646 |||||||||||||||||||| Sbjct: 19104569 tagaatacaaagtattttgg 19104588
>gb|AC018890.13| Homo sapiens BAC clone RP11-493G24 from 2, complete sequence Length = 173965 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 acaaaataggaaaactataa 364 |||||||||||||||||||| Sbjct: 137862 acaaaataggaaaactataa 137843
>gb|AC137053.2| Homo sapiens 12 BAC RP11-641O3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116625 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 624 ttttagaatacaaagtattt 643 |||||||||||||||||||| Sbjct: 20607 ttttagaatacaaagtattt 20626
>gb|AF250284.1|AF250284 Amsacta moorei entomopoxvirus, complete genome Length = 232392 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 ctttatcaatcattaatttt 544 |||||||||||||||||||| Sbjct: 163161 ctttatcaatcattaatttt 163180
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 cttaacactcattttccctt 166 |||||||||||||||||||| Sbjct: 1312217 cttaacactcattttccctt 1312198
>gb|AC004055.1|AC004055 Homo sapiens chromosome 4 clone B221D23 map 4q25, complete sequence Length = 109926 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 tatcaaattcacaactccaa 319 |||||||||||||||||||| Sbjct: 28803 tatcaaattcacaactccaa 28822
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 627 tagaatacaaagtattttgg 646 |||||||||||||||||||| Sbjct: 38090 tagaatacaaagtattttgg 38109
>gb|AC159012.2| Gallus gallus BAC clone CH261-5N5 from chromosome unknown, complete sequence Length = 231341 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 437 cattgaaataaagttatttgtcct 460 ||||||||||||||||||| |||| Sbjct: 43214 cattgaaataaagttatttttcct 43237
>gb|AC158367.3| Gallus gallus BAC clone CH261-50N13 from chromosome unknown, complete sequence Length = 230079 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 437 cattgaaataaagttatttgtcct 460 ||||||||||||||||||| |||| Sbjct: 155382 cattgaaataaagttatttttcct 155405
>gb|M77182.1|AAVSPHERE Amsacta entomopoxvirus spheroidin gene, complete cds, and four vaccinia related orfs Length = 8457 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 ctttatcaatcattaatttt 544 |||||||||||||||||||| Sbjct: 6345 ctttatcaatcattaatttt 6364
>gb|M75889.1|AAVSPHER Amsacta moorei entomopoxvirus spheroidin gene, complete cds Length = 4657 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 ctttatcaatcattaatttt 544 |||||||||||||||||||| Sbjct: 4444 ctttatcaatcattaatttt 4463
>emb|AL834160.1|HSM805409 Homo sapiens mRNA; cDNA DKFZp761E1217 (from clone DKFZp761E1217) Length = 3474 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 624 ttttagaatacaaagtattt 643 |||||||||||||||||||| Sbjct: 2825 ttttagaatacaaagtattt 2806
>emb|AL592112.7| Mouse DNA sequence from clone RP23-87H12 on chromosome 17, complete sequence Length = 158307 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 acataacaaatagcccacaaaata 352 |||||||||| ||||||||||||| Sbjct: 91762 acataacaaacagcccacaaaata 91785 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,936,806 Number of Sequences: 3902068 Number of extensions: 6936806 Number of successful extensions: 157443 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 157145 Number of HSP's gapped (non-prelim): 299 length of query: 668 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 645 effective length of database: 17,143,297,704 effective search space: 11057427019080 effective search space used: 11057427019080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)