>gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome 12, complete sequence
          Length = 226392

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 69     tcctgctctcttgctatgtgc 89
              |||||||||||||||||||||
Sbjct: 109534 tcctgctctcttgctatgtgc 109554

>gb|AC122030.3| Mus musculus BAC clone RP24-401B24 from chromosome 3, complete sequence
          Length = 123838

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     atctgtctcttcatttaaaa 24
             ||||||||||||||||||||
Sbjct: 99723 atctgtctcttcatttaaaa 99704

>gb|AC090654.38| Mus musculus strain C57BL/6J clone rp23-329p1 map 14, complete sequence
          Length = 204267

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     cacaatctgtctcttcatttaaaa 24
             |||| |||||||||||||||||||
Sbjct: 41214 cacattctgtctcttcatttaaaa 41191

>gb|AC090659.19| Mus musculus strain C57BL/6J chromosome 14 clone rp23-473n18, complete
              sequence
          Length = 194320

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1      cacaatctgtctcttcatttaaaa 24
              |||| |||||||||||||||||||
Sbjct: 156422 cacattctgtctcttcatttaaaa 156399

>gb|AC007621.34| Homo sapiens 12 BAC RP11-757G14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 144000

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 91    aggcagactccttgaacctctgca 114
             |||||||||| |||||||||||||
Sbjct: 34971 aggcagactcattgaacctctgca 34948

>ref|XM_469033.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3363

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 57   tgccgcagcacgtcctgct 75
            |||||||||||||||||||
Sbjct: 2627 tgccgcagcacgtcctgct 2609

>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17
              map near S16403, complete sequence
          Length = 172238

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 57     tgccgcagcacgtcctgct 75
              |||||||||||||||||||
Sbjct: 157478 tgccgcagcacgtcctgct 157496

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 57       tgccgcagcacgtcctgct 75
                |||||||||||||||||||
Sbjct: 25041041 tgccgcagcacgtcctgct 25041059

>gb|AC127248.3| Mus musculus BAC clone RP24-442E2 from chromosome 5, complete sequence
          Length = 176488

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 92    ggcagactccttgaacctctgca 114
             |||||||||||| ||||||||||
Sbjct: 37538 ggcagactccttcaacctctgca 37560

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 49      gacggtcctgccgcagcac 67
               |||||||||||||||||||
Sbjct: 2733508 gacggtcctgccgcagcac 2733490

>gb|AC122852.2| Mus musculus BAC clone RP23-172A6 from 18, complete sequence
          Length = 189709

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 6      tctgtctcttcatttaaaa 24
              |||||||||||||||||||
Sbjct: 122256 tctgtctcttcatttaaaa 122238

>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete
             sequence
          Length = 170020

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    tgccgcagcacgtcctgct 75
             |||||||||||||||||||
Sbjct: 72848 tgccgcagcacgtcctgct 72866

>ref|XM_965132.1| PREDICTED: Tribolium castaneum similar to CG10823-PA, isoform A
            (LOC658772), mRNA
          Length = 1311

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 55   cctgccgcagcacgtcctgctct 77
            ||||||||||||| |||||||||
Sbjct: 1164 cctgccgcagcacctcctgctct 1142

>gb|AC149043.3| Uncultured bacterium zdt-44a23 clone zdt-44a23, complete sequence
          Length = 35946

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 56    ctgccgcagcacgtcctgc 74
             |||||||||||||||||||
Sbjct: 35008 ctgccgcagcacgtcctgc 35026

>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 49      gacggtcctgccgcagcac 67
               |||||||||||||||||||
Sbjct: 1697997 gacggtcctgccgcagcac 1697979

>gb|AC027684.3| Homo sapiens chromosome 16 clone RP11-148F10, complete sequence
          Length = 187520

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     cacgtcctgctctcttgct 83
              |||||||||||||||||||
Sbjct: 139629 cacgtcctgctctcttgct 139647

>gb|AF039717.2| Caenorhabditis elegans cosmid R13H8, complete sequence
          Length = 19120

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     cacaatctgtctcttcatt 19
             |||||||||||||||||||
Sbjct: 16278 cacaatctgtctcttcatt 16296

>ref|NM_001026422.1| Caenorhabditis elegans abnormal DAuer Formation family member
           (daf-16) (daf-16) mRNA, complete cds
          Length = 2575

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   cacaatctgtctcttcatt 19
           |||||||||||||||||||
Sbjct: 706 cacaatctgtctcttcatt 724

>ref|NM_001026426.1| Caenorhabditis elegans abnormal DAuer Formation family member
           (daf-16) (daf-16) mRNA, complete cds
          Length = 1027

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   cacaatctgtctcttcatt 19
           |||||||||||||||||||
Sbjct: 89  cacaatctgtctcttcatt 107

>ref|NM_001026424.1| Caenorhabditis elegans abnormal DAuer Formation family member
           (daf-16) (daf-16) mRNA, complete cds
          Length = 3035

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   cacaatctgtctcttcatt 19
           |||||||||||||||||||
Sbjct: 928 cacaatctgtctcttcatt 946

>ref|NM_001026423.2| Caenorhabditis elegans abnormal DAuer Formation family member
           (daf-16) (daf-16) mRNA, complete cds
          Length = 3032

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   cacaatctgtctcttcatt 19
           |||||||||||||||||||
Sbjct: 922 cacaatctgtctcttcatt 940

>ref|NM_001026425.1| Caenorhabditis elegans abnormal DAuer Formation family member
           (daf-16) (daf-16) mRNA, complete cds
          Length = 1464

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   cacaatctgtctcttcatt 19
           |||||||||||||||||||
Sbjct: 526 cacaatctgtctcttcatt 544

>ref|NM_001026427.1| Caenorhabditis elegans abnormal DAuer Formation family member
           (daf-16) (daf-16) mRNA, complete cds
          Length = 2852

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   cacaatctgtctcttcatt 19
           |||||||||||||||||||
Sbjct: 769 cacaatctgtctcttcatt 787

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 57       tgccgcagcacgtcctgct 75
                |||||||||||||||||||
Sbjct: 25132350 tgccgcagcacgtcctgct 25132368

>gb|AF017302.1|AF017302 Danio rerio NeuroD (nrd) gene, complete cds
          Length = 1053

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 101 cttgaacctctgcatacgc 119
           |||||||||||||||||||
Sbjct: 285 cttgaacctctgcatacgc 267

>gb|AC018768.7| Homo sapiens chromosome 16 clone RP11-564M2, complete sequence
          Length = 198093

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    cacgtcctgctctcttgct 83
             |||||||||||||||||||
Sbjct: 33253 cacgtcctgctctcttgct 33271

>gb|AF032112.1|AF032112 Caenorhabditis elegans DAF-16 (daf-16) mRNA, complete cds
          Length = 3035

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   cacaatctgtctcttcatt 19
           |||||||||||||||||||
Sbjct: 928 cacaatctgtctcttcatt 946

>gb|AF020344.1|AF020344 Caenorhabditis elegans fork head-related transcription factor
           DAF-16b (daf-16) mRNA, complete cds
          Length = 2345

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   cacaatctgtctcttcatt 19
           |||||||||||||||||||
Sbjct: 704 cacaatctgtctcttcatt 722

>gb|AF020343.1|AF020343 Caenorhabditis elegans fork head-related transcription factor
           DAF-16a2 (daf-16) mRNA, complete cds
          Length = 2565

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   cacaatctgtctcttcatt 19
           |||||||||||||||||||
Sbjct: 885 cacaatctgtctcttcatt 903

>gb|AF020342.1|AF020342 Caenorhabditis elegans fork head-related transcription factor
           DAF-16a1 (daf-16) mRNA, complete cds
          Length = 2579

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   cacaatctgtctcttcatt 19
           |||||||||||||||||||
Sbjct: 893 cacaatctgtctcttcatt 911

>emb|AL929466.8| Mouse DNA sequence from clone RP23-431F3 on chromosome 4, complete
            sequence
          Length = 116357

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    cacaatctgtctcttcatt 19
            |||||||||||||||||||
Sbjct: 8602 cacaatctgtctcttcatt 8584


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 874,798
Number of Sequences: 3902068
Number of extensions: 874798
Number of successful extensions: 58324
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58208
Number of HSP's gapped (non-prelim): 116
length of query: 125
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 104
effective length of database: 17,151,101,840
effective search space: 1783714591360
effective search space used: 1783714591360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)