ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23p17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase m... 39 0.011
2BARA_SHIFL (P59342) Signal transduction histidine-protein kinase... 34 0.47
3BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase... 34 0.47
4BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase... 34 0.47
5BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase... 34 0.47
6SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1... 33 0.62
7MUKB_YERPS (Q66CH3) Chromosome partition protein mukB (Structura... 33 0.62
8MUKB_YERPE (Q8ZG99) Chromosome partition protein mukB (Structura... 33 0.62
9ATOC_ECOLI (Q06065) Acetoacetate metabolism regulatory protein a... 32 1.4
10DBP4_NEUCR (Q7RZ35) ATP-dependent RNA helicase dbp-4 (EC 3.6.1.-) 32 1.4
11ETR2_LYCES (O49187) Ethylene receptor 2 (EC 2.7.13.3) (LeETR2) 32 2.4
12MUKB_KLEPN (Q937H2) Chromosome partition protein mukB (Structura... 31 3.1
13FA12_HUMAN (P00748) Coagulation factor XII precursor (EC 3.4.21.... 31 3.1
14MUKB_PHOLL (Q7N6B7) Chromosome partition protein mukB (Structura... 31 4.0
15ITIH2_MOUSE (Q61703) Inter-alpha-trypsin inhibitor heavy chain H... 31 4.0
16ETR1_PELHO (Q9XH58) Ethylene receptor 1 (EC 2.7.13.3) (PhETR1) 30 5.2
17ETR1_PRUPE (Q9M7M1) Ethylene receptor (EC 2.7.13.3) 30 6.9
18LUXQ_VIBVY (Q7MD16) Autoinducer 2 sensor kinase/phosphatase luxQ... 30 6.9
19LUXQ_VIBVU (Q8D5Z6) Autoinducer 2 sensor kinase/phosphatase luxQ... 30 6.9
20ITIH2_MESAU (P97279) Inter-alpha-trypsin inhibitor heavy chain H... 30 6.9
21ETFD_HUMAN (Q16134) Electron transfer flavoprotein-ubiquinone ox... 30 6.9
22KCAB1_MUSPU (Q28528) Voltage-gated potassium channel beta-1 subu... 30 9.0
23ETR1_TOBAC (O48929) Ethylene receptor (EC 2.7.13.3) (NT-ETR1) 30 9.0
24ETR1_PASED (Q9ZWL6) Ethylene receptor (EC 2.7.13.3) (PE-ETR1) 30 9.0
25ITIH2_HUMAN (P19823) Inter-alpha-trypsin inhibitor heavy chain H... 30 9.0

>MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase mak2 (EC|
            2.7.13.3) (Mcs4-associated kinase 2) (His-Asp
            phosphorelay kinase phk1)
          Length = 2310

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = -1

Query: 678  PILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRF 553
            P++A+TAD+ ++  + CL+  M+ Y++KPF  +QL   V  F
Sbjct: 2261 PVIALTADIQKSAKQRCLEVGMNFYLTKPFTQKQLVNAVREF 2302



to top

>BARA_SHIFL (P59342) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -1

Query: 684 RTPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRF 553
           +TP++A+TA  +    E  L   M  Y++KP E E+L+  + R+
Sbjct: 741 QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRY 784



to top

>BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -1

Query: 684 RTPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRF 553
           +TP++A+TA  +    E  L   M  Y++KP E E+L+  + R+
Sbjct: 741 QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRY 784



to top

>BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -1

Query: 684 RTPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRF 553
           +TP++A+TA  +    E  L   M  Y++KP E E+L+  + R+
Sbjct: 741 QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRY 784



to top

>BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -1

Query: 684 RTPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRF 553
           +TP++A+TA  +    E  L   M  Y++KP E E+L+  + R+
Sbjct: 741 QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRY 784



to top

>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)|
          Length = 1220

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -1

Query: 681  TPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRF 553
            +PI+A+TA    +  + CL+  M+G++SKP +  +L   +T F
Sbjct: 1167 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEF 1209



to top

>MUKB_YERPS (Q66CH3) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1485

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 666  MTADVIQATYEHCLKCEMDGYVSKPF----EGEQLYREVTRFFQNHDHVQ*VGLYG 511
            + A  I   +E C + EM   ++ P     E    Y+ V + FQNH+HV  VGL G
Sbjct: 1411 LDAKSIATLFELCERLEMQLIIAAPENISPEKGTTYKLVRKVFQNHEHVHVVGLRG 1466



to top

>MUKB_YERPE (Q8ZG99) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1485

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 666  MTADVIQATYEHCLKCEMDGYVSKPF----EGEQLYREVTRFFQNHDHVQ*VGLYG 511
            + A  I   +E C + EM   ++ P     E    Y+ V + FQNH+HV  VGL G
Sbjct: 1411 LDAKSIATLFELCERLEMQLIIAAPENISPEKGTTYKLVRKVFQNHEHVHVVGLRG 1466



to top

>ATOC_ECOLI (Q06065) Acetoacetate metabolism regulatory protein atoC|
           (Ornithine/arginine decarboxylase inhibitor) (Ornithine
           decarboxylase antizyme)
          Length = 461

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 684 RTPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRFFQ 547
           RTP++ MTA     T    L+C    YV KPF+ ++L   V R  Q
Sbjct: 76  RTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121



to top

>DBP4_NEUCR (Q7RZ35) ATP-dependent RNA helicase dbp-4 (EC 3.6.1.-)|
          Length = 823

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = -2

Query: 422 FEKIPGDGATQALFLLGTPSHQEAKKKGVKLLKQGCRCTMRHFVEQLPGDGSREKK 255
           F+K+  DG   +L L GTP  +  K + VK LK   R  M    +    DG   KK
Sbjct: 479 FDKLDLDGFASSLGLPGTPQIRYQKGEDVKKLKNASRAAMSSGSDTEGSDGEIRKK 534



to top

>ETR2_LYCES (O49187) Ethylene receptor 2 (EC 2.7.13.3) (LeETR2)|
          Length = 736

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 684 RTPILAMTADVIQATYEHCLKCEMDGYVSKP 592
           R  I+A+T +  Q T E+CL+  MDG + KP
Sbjct: 686 RPLIVALTGNTDQVTKENCLRVGMDGVILKP 716



to top

>MUKB_KLEPN (Q937H2) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1479

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 666  MTADVIQATYEHCLKCEMDGYVSKPF----EGEQLYREVTRFFQNHDHVQ*VGLYG 511
            + A  I   +E C + EM   ++ P     E    Y+ V + F NH+HV  VGL G
Sbjct: 1408 LDARSIATLFELCERLEMQLIIAAPENISPEKGTTYKLVRKVFNNHEHVHVVGLRG 1463



to top

>FA12_HUMAN (P00748) Coagulation factor XII precursor (EC 3.4.21.38) (Hageman|
           factor) (HAF) [Contains: Coagulation factor XIIa heavy
           chain; Beta-factor XIIa part 1; Beta-factor XIIa part 2;
           Coagulation factor XIIa light chain]
          Length = 615

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 63  HSNAQKGNSCTNHQT-PHYVHPCDSPGRRKKGKEKTFSPYILHLHYK 200
           HS  QKG +C N  + PH + P    G   + KEK F P +L   +K
Sbjct: 101 HSPCQKGGTCVNMPSGPHCLCPQHLTGNHCQ-KEKCFEPQLLRFFHK 146



to top

>MUKB_PHOLL (Q7N6B7) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1482

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 666  MTADVIQATYEHCLKCEMDGYVSKPF----EGEQLYREVTRFFQNHDHVQ*VGLYG 511
            + A  I   +E C + +M   ++ P     E    Y+ V + F+NH+HV  VGL G
Sbjct: 1411 LDAKSIATLFELCERLQMQLIIAAPENISPEKGTTYKLVRKVFKNHEHVHVVGLRG 1466



to top

>ITIH2_MOUSE (Q61703) Inter-alpha-trypsin inhibitor heavy chain H2 precursor|
           (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain
           2)
          Length = 946

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 388 AWVAPSPGIFSKLVLLGALQLQQTPPRH 471
           +W  PSP   S ++ +GA  L+ TPP H
Sbjct: 668 SWANPSPTPMSAMLAVGAKPLESTPPTH 695



to top

>ETR1_PELHO (Q9XH58) Ethylene receptor 1 (EC 2.7.13.3) (PhETR1)|
          Length = 740

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 12/47 (25%), Positives = 29/47 (61%)
 Frame = -1

Query: 684 RTPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRFFQN 544
           R  I+A+T++  + T E+CL+  M+G + KP   +++   +++  ++
Sbjct: 688 RPLIVALTSNADKVTKENCLRVGMEGVILKPVSVDKMRNVLSKLLEH 734



to top

>ETR1_PRUPE (Q9M7M1) Ethylene receptor (EC 2.7.13.3)|
          Length = 738

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -1

Query: 684 RTPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQL 574
           R  ++A+T ++ + T E+C++  MDG + KP   +++
Sbjct: 685 RPVLVALTGNIDKMTKENCMRVGMDGVILKPVSVDKM 721



to top

>LUXQ_VIBVY (Q7MD16) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)|
           (EC 3.1.3.-)
          Length = 857

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 681 TPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRF 553
           TPI A TAD  ++T +  L    +  + KP + ++L+ E+  F
Sbjct: 807 TPIYACTADAQESTKQEFLSAGANRVIVKPIKEQELHDELLHF 849



to top

>LUXQ_VIBVU (Q8D5Z6) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)|
           (EC 3.1.3.-)
          Length = 857

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 681 TPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRF 553
           TPI A TAD  ++T +  L    +  + KP + ++L+ E+  F
Sbjct: 807 TPIYACTADAQESTKQEFLSAGANRVIVKPIKEQELHDELLHF 849



to top

>ITIH2_MESAU (P97279) Inter-alpha-trypsin inhibitor heavy chain H2 precursor|
           (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain
           2) (HC2)
          Length = 946

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 388 AWVAPSPGIFSKLVLLGALQLQQTPPRHAM 477
           +W +PSP     ++ +GA +L+ TPP H +
Sbjct: 668 SWASPSPTPVMAMLAVGANRLESTPPPHVI 697



to top

>ETFD_HUMAN (Q16134) Electron transfer flavoprotein-ubiquinone oxidoreductase,|
           mitochondrial precursor (EC 1.5.5.1) (ETF-QO)
           (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase)
           (Electron-transferring-flavoprotein dehydrogenase)
          Length = 617

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
 Frame = -1

Query: 471 MARRSLLKLQCSQEYEL*KN-----TWRWSHPGSV---SSWYTIPPRGKEKRCEAL 328
           +A+ S L  QC    ++ KN       RWS   +V   ++ YTI PR K+KR E +
Sbjct: 5   LAKLSCLAYQCFHALKIKKNYLPLCAIRWSSTSTVPRITTHYTIYPRDKDKRWEGV 60



to top

>KCAB1_MUSPU (Q28528) Voltage-gated potassium channel beta-1 subunit (K(+)|
           channel beta-1 subunit) (Kv-beta-1)
          Length = 408

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 50  AQKNTFKCTKGKFLHKPPNTSLCTPMRFPGKKEKRKGKNFLSLH 181
           + ++  KC +   + KPP  + C P R  G  E++  + FL +H
Sbjct: 21  SSESALKCRRHLAVTKPPPQAACWPARPSGAAERKFLEKFLRVH 64



to top

>ETR1_TOBAC (O48929) Ethylene receptor (EC 2.7.13.3) (NT-ETR1)|
          Length = 738

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 684 RTPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQL 574
           R  I+A+T +  + T E+C++  MDG + KP   +++
Sbjct: 686 RPLIVALTGNTDRVTKENCMRVGMDGVILKPVSVDKM 722



to top

>ETR1_PASED (Q9ZWL6) Ethylene receptor (EC 2.7.13.3) (PE-ETR1)|
          Length = 738

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 684 RTPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQL 574
           R  ++A+TA   + T E+C++  MDG + KP   +++
Sbjct: 686 RPLVVALTASTDRMTKENCMRVGMDGAILKPVSVDKM 722



to top

>ITIH2_HUMAN (P19823) Inter-alpha-trypsin inhibitor heavy chain H2 precursor|
           (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain
           2) (Inter-alpha-trypsin inhibitor complex component II)
           (Serum-derived hyaluronan-associated protein) (SHAP)
          Length = 946

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 370 VPRRNRAWVAPSPGIFSKLVLLGALQLQQTPPRHAM 477
           VP    +W  PSP     ++  G+  L+ TPP H M
Sbjct: 662 VPDSTPSWANPSPTPVISMLAQGSQVLESTPPPHVM 697


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,993,879
Number of Sequences: 219361
Number of extensions: 2550139
Number of successful extensions: 6812
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 6481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6809
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top